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Anopheles gambiae
cluster # 6443 cluster # 6443       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6443#0 length = 1532 sequences # 4  
consensus_6443#1 length = 384 sequences # 1  

consensusID : consensus_6443#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1532
fasta sequence
                              [CTGACGAAGAAGGAAATCCAGCGCCTGAAGTGCCGCATCCTGCAGGAGATTGAGGATAATGGGATCAAAATCTATCCACTGCCCGATTGTGATAGCGACGAGGACGAGGACTACAAGGAGCAGGTGCGCCAGCTGAAGGAGGCGGTCCCGTTCGCCGTCTGCGGCTCGACCACGCTGCTCGAGGTGAAGGGCCGCAAGGTGCGCGGTCGGCTTTACCCCTGGGGTGTCGTCGAGGTGGAAAACCCGGACCATTGCGATTTTATCAAGCTTCGCACCATGCTGATCACNCACATGCAANACCTGCAGGAGGTCACGCAGGAGGTGCACTA-CNAAAACTATCGCTCGGAGCGGTTGGCGAAATCCGTGCGCAAAAACACCAATTCCGTGATAAAGGAGGAGAACGGTGGCGCCGGCATTGTGCCCGGCGAGGTGTTGTCCGAGAAGGATCGGATCCTGCGCGAAAAGGAGGAGGAAATCCGCCGAATGCAGGAGAAGCTCGCCCAGATGCAGGCCAAGTTTCAGGCACAGAAGTAATTGTGGTGTAGTGAAAAGAGGAATAT--------ACACACACACACACACAAAAGAGGGAAGAAGAGGATGGTGATGATGAATCAAGTTAGTTCATGCACATGCACAAAAAAACCCGAAACGAAACGAAAAAAAAAGAATGTATTTGTGTCCTCTCATGAAATGATTTTTTCGAAAGCATTCATCATTCCGCGCAGTACGACTCATTAAAAAACAAACCGATTATCGAGTAGTAGTAGTAGTACATGAATGGCGTTATTTGCGATAATGGGCCGCTTGTTGCGCCCTGCCAGTAGCCCCCCCGTGGTTTCGATTGCGTTTAATGCAAAACACAAAACAGTGAGCCCACGCGTTTTGAAATCTTCCTCATTTTTGTGCATCATCATCATCGTCATCATCATCATCATCATGATTACACATATATTTTTGGTACGAACTATTCGCATATAATTGTAGAGTAAAGGTTAGATCGTATAGCATACAAGTATATATATACAGAGCAAACCTTCCACGTTAGTTGCCTCTCCAACAAAACACAGCAGGCCGGGGTAAAAACGGGTACTTAAAAAACCAGACCAATTGGCTGCACCCAACCCAAACCCATCTCGAAAAACGCTCTCTTGTTTGTTTTGGTTGTTTTTTAGCTTCATTCATAAAGTTGCAGTAGCAGCAGCTCATTTTAGGCTCGATGGCTTTCCTTTGTTTTCGGGTAAACGACACGAAATGTCCAATTACGGTACGAGTTCAATTGTGCAGTGGGTAACAACGACACCAAAATTATGCTTTTCCTTCTCTCGAGACACCCAGGCCCGGTGTGTTGTACGTCATTCAGCTGCAATTCAATCGCAATAATTTTCTACGGAGACGAAAGTAGAGTAAACGTTAATCCATCCTCCTCCTTACCCCTTTGCTCGCGTTTGACACGAAACTAGCGACGAATAAGTAAGGGGAAGGCCAGGCAAGACAGACAGGATGGGATGGGGTGTGGTTGTGTCTCGATAATATTT]

[+] EMBL BX627353             [CTGACGAAGAAGGAAATCCAGCGCCTGAAGTGCCGCATCCTGCAGGAGATTGAGGATAATGGGATCAAAATCTATCCACTGCCCGATTGTGATAGCGACGAGGACGAGGACTACAAGGAGCAGGTGCGCCAGCTGAAGGAGGCGGTCCCGTTCGCCGTCTGCGGCTCGACCACGCTGCTCGAGGTGAAGGGCCGCAAGGTGCGCGGTCGGCTTTACCCCTGGGGTGTCGTCGAGGTGGAAAACCCGGACCATTGCGATTTTATCAAGCTTCGCACCATGCTGATCACNCACATGCAANACCTGCAGGAGGTCACGCAGGAGGTGCACTACCNAAAACTATCGCTCGGAGCGGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL AGA283485            [                                                                                                                                                                                                CGCAAGGTGCGCGGTCGGCTTTACCCGTGGGGTGTCGTCGAGGTGAAAAACCCGGACCATTGCGATTTTATCAAGCTTCGCACCATGCTGATCACGCACATGCAAGACCTGCAGGAGGTCACGCAGGAGGTGCACTA CGAAAACTATCGCTCGGAGCGGTTGGCGAAATCCGTGCGCAAAAACACCAATTCCGTGATAAAGGAGGAGAACGGTGGCGCCGGCATTGTGCCCGGCGAGGTGTTGTCCGAGAAGGATCGGATCCTGCGCGAAAAGGAGGAGGAAATCCGCCGAATGCAGGAGAAGCTCGCCCAGATGCAGGCCAAGTTTCAGGCACAGAAGTAATTGTGGTGTAGTGAAAAGAGGAATATATACACCAACACACACACACACACAAAAGAGGGAAGAAGAGGATGGTGATGATGAATCAAGTTAGTTCATGCACATGCACAAAAAAACCCGAAACGAAACGAAAAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BX622772             [                                                                                                                                                                                                                                                                                                                                                              GGTTGGCGAAATCCGTGCGCAAAAACACCAATTCCGTGATAAAGGAGGAGAACGGTGGCGCCGGCATTGTGCCCGGCGAGGTGTTGTCCGAGAAGGATCGGATCCTGCGCGAAAAGGAGGAGGAAATCCGCCGAATGCAGGAGAAGCTCGCCCAGATGCAGGCCAAGTTTCAGGCACAGAAGTAATTGTGGTGTAGTGAAAAGAGGGATAT        ACACACACACACACACAAAAGAGGGAAGAAGAGGATGGTGATGATGAATCAAGTTAGTTCATGCACATGCACAAAAAAACCCGAAACGAAACGAACAAAACAGAATGTATTTGTGTCCTCTCATGAAATGATTTTTTCGAAAGCATTCATCATTCCGCGCAGTACGACTCATTAAAAAACAAACCGATTATCGAGTAGTAGTAGTAGTACATGAATGGCGTTATTTGCGATAATGGGCCGCTTGTTGCGCCCTGCCAGTAGCCCCCCCGTGGTTTCGATTGCGTTTAATGCAAAACACAAAACAGTGAGCCCACGCGTTTTGAAATCTTCCTCATTTTTGTGCATCATCATCATCGTCATCATCATCATCATCATGATTACACATATATTTTTGGTACGAACTATTCGCATATAATTGTAGAGTAAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BM582840             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ccgCTCATTTTTGTGCATCATCATCATCGTCATCATCATCATCATCATGATTACACATATATTTTTGGTACGAACTATTCGCATATAATTGTAGAGTAAAGGTTAGATCGTATAGCATACAAGTATATATATACAGAGCAAACCTTCCACGTTAGTTGCCTCTCCAACAAAACACAGCAGGCCGGGGTAAAAACGGGTACTTAAAAAACCAGACCAATTGGCTGCACCCAACCCAAACCCATCTCGAAAAACGCTCTCTTGTTTGTTTTGGTTGTTTTTTAGCTTCATTCATAAAGTTGCAGTAGCAGCAGCTCATTTTAGGCTCGATGGCTTTCCTTTGTTTTCGGGTAAACGACACGAAATGTCCAATTACGGTACGAGTTCAATTGTGCAGTGGGTAACAACGACACCAAAATTATGCTTTTCCTTCTCTCGAGACACCCAGGCCCGGTGTGTTGTACGTCATTCAGCTGCAATTCAATCGCAATAATTTTCTACGGAGACGAAAGTAGAGTAAACGTTAATCCATCCTCCTCCTTACCCCTTTGCTCGCGTTTGACACGAAACTAGCGACGAATAAGTAAGGGGAAGGCCAGGCAAGACAGACAGGATGGGATGGGGTGTGGTTGTGTCTCGATAATATTT]


>consensus_6443#0 CTGACGAAGAAGGAAATCCAGCGCCTGAAGTGCCGCATCCTGCAGGAGATTGAGGATAAT GGGATCAAAATCTATCCACTGCCCGATTGTGATAGCGACGAGGACGAGGACTACAAGGAG CAGGTGCGCCAGCTGAAGGAGGCGGTCCCGTTCGCCGTCTGCGGCTCGACCACGCTGCTC GAGGTGAAGGGCCGCAAGGTGCGCGGTCGGCTTTACCCCTGGGGTGTCGTCGAGGTGGAA AACCCGGACCATTGCGATTTTATCAAGCTTCGCACCATGCTGATCACNCACATGCAANAC CTGCAGGAGGTCACGCAGGAGGTGCACTACNAAAACTATCGCTCGGAGCGGTTGGCGAAA TCCGTGCGCAAAAACACCAATTCCGTGATAAAGGAGGAGAACGGTGGCGCCGGCATTGTG CCCGGCGAGGTGTTGTCCGAGAAGGATCGGATCCTGCGCGAAAAGGAGGAGGAAATCCGC CGAATGCAGGAGAAGCTCGCCCAGATGCAGGCCAAGTTTCAGGCACAGAAGTAATTGTGG TGTAGTGAAAAGAGGAATATACACACACACACACACAAAAGAGGGAAGAAGAGGATGGTG ATGATGAATCAAGTTAGTTCATGCACATGCACAAAAAAACCCGAAACGAAACGAAAAAAA AAGAATGTATTTGTGTCCTCTCATGAAATGATTTTTTCGAAAGCATTCATCATTCCGCGC AGTACGACTCATTAAAAAACAAACCGATTATCGAGTAGTAGTAGTAGTACATGAATGGCG TTATTTGCGATAATGGGCCGCTTGTTGCGCCCTGCCAGTAGCCCCCCCGTGGTTTCGATT GCGTTTAATGCAAAACACAAAACAGTGAGCCCACGCGTTTTGAAATCTTCCTCATTTTTG TGCATCATCATCATCGTCATCATCATCATCATCATGATTACACATATATTTTTGGTACGA ACTATTCGCATATAATTGTAGAGTAAAGGTTAGATCGTATAGCATACAAGTATATATATA CAGAGCAAACCTTCCACGTTAGTTGCCTCTCCAACAAAACACAGCAGGCCGGGGTAAAAA CGGGTACTTAAAAAACCAGACCAATTGGCTGCACCCAACCCAAACCCATCTCGAAAAACG CTCTCTTGTTTGTTTTGGTTGTTTTTTAGCTTCATTCATAAAGTTGCAGTAGCAGCAGCT CATTTTAGGCTCGATGGCTTTCCTTTGTTTTCGGGTAAACGACACGAAATGTCCAATTAC GGTACGAGTTCAATTGTGCAGTGGGTAACAACGACACCAAAATTATGCTTTTCCTTCTCT CGAGACACCCAGGCCCGGTGTGTTGTACGTCATTCAGCTGCAATTCAATCGCAATAATTT TCTACGGAGACGAAAGTAGAGTAAACGTTAATCCATCCTCCTCCTTACCCCTTTGCTCGC GTTTGACACGAAACTAGCGACGAATAAGTAAGGGGAAGGCCAGGCAAGACAGACAGGATG GGATGGGGTGTGGTTGTGTCTCGATAATATTT



consensusID : consensus_6443#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 384
fasta sequence
                              [GAAATTCCAGGTTTACCGGACATTGCGATTTTATCAAGCTTCGCACTATGCTGATCACGCACATGCAAGACCTGCAGGAGGTCACGCAGGAGGTGCACTACGAAAACTATCGCTCGGAGCGGTTGGCGAAATCCGTGCGCAAAAACACAATTCGTGATAAAGGAGGAGAACGGTGGGGCGGCATTGTGCCCGGCGAGGTGTTGTCCGAGAAGGATCGGATCCTGCGCGAAAAGGAGGAGGAAATCGCCGAATGCAGGAGAAGCTCGCCCAGATGCAGGCCAAGTTTCATGGCACAGAAGGTAACTTGTGGTGTAGTGAAAAGAGGGATATACACACACACACACAACAAAAAGAGGGAANAAAGGATGGTGATGATGAATCAAA]

[+] EMBL AL695683             [GAAATTCCAGGTTTACCGGACATTGCGATTTTATCAAGCTTCGCACTATGCTGATCACGCACATGCAAGACCTGCAGGAGGTCACGCAGGAGGTGCACTACGAAAACTATCGCTCGGAGCGGTTGGCGAAATCCGTGCGCAAAAACACAATTCGTGATAAAGGAGGAGAACGGTGGGGCGGCATTGTGCCCGGCGAGGTGTTGTCCGAGAAGGATCGGATCCTGCGCGAAAAGGAGGAGGAAATCGCCGAATGCAGGAGAAGCTCGCCCAGATGCAGGCCAAGTTTCATGGCACAGAAGGTAACTTGTGGTGTAGTGAAAAGAGGGATATACACACACACACACAACAAAAAGAGGGAANAAAGGATGGTGATGATGAATCAAA]


>consensus_6443#1 GAAATTCCAGGTTTACCGGACATTGCGATTTTATCAAGCTTCGCACTATGCTGATCACGC ACATGCAAGACCTGCAGGAGGTCACGCAGGAGGTGCACTACGAAAACTATCGCTCGGAGC GGTTGGCGAAATCCGTGCGCAAAAACACAATTCGTGATAAAGGAGGAGAACGGTGGGGCG GCATTGTGCCCGGCGAGGTGTTGTCCGAGAAGGATCGGATCCTGCGCGAAAAGGAGGAGG AAATCGCCGAATGCAGGAGAAGCTCGCCCAGATGCAGGCCAAGTTTCATGGCACAGAAGG TAACTTGTGGTGTAGTGAAAAGAGGGATATACACACACACACACAACAAAAAGAGGGAAN AAAGGATGGTGATGATGAATCAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6443#0      CTGACGAAGAAGGAAATCCAGCGCCTGAAGTGCCGCATCCTGCAGGAGATTGAGGATAAT 60
consensus_6443#1      ------------------------------------------------------------
                                                                                  

consensus_6443#0      GGGATCAAAATCTATCCACTGCCCGATTGTGATAGCGACGAGGACGAGGACTACAAGGAG 120
consensus_6443#1      ------------------------------------------------------------
                                                                                  

consensus_6443#0      CAGGTGCGCCAGCTGAAGGAGGCGGTCCCGTTCGCCGTCTGCGGCTCGACCACGCTGCTC 180
consensus_6443#1      ------------------------------------------------------------
                                                                                  

consensus_6443#0      GAGGTGAAGGGCCGCAAGGTGCGCGGTCGGCTTTACCCCTGGGGTGTCGTCGAGGTGGAA 240
consensus_6443#1      ------------------------------------------GAAAT--TCCAGGTTTA- 15
                                                                *   *  ** ****  * 

consensus_6443#0      AACCCGGACCATTGCGATTTTATCAAGCTTCGCACCATGCTGATCACNCACATGCAANAC 300
consensus_6443#1      ---CCGGAC-ATTGCGATTTTATCAAGCTTCGCACTATGCTGATCACGCACATGCAAGAC 71
                         ****** ************************* *********** ********* **

consensus_6443#0      CTGCAGGAGGTCACGCAGGAGGTGCACTACNAAAACTATCGCTCGGAGCGGTTGGCGAAA 360
consensus_6443#1      CTGCAGGAGGTCACGCAGGAGGTGCACTACGAAAACTATCGCTCGGAGCGGTTGGCGAAA 131
                      ****************************** *****************************

consensus_6443#0      TCCGTGCGCAAAAACACCAATTCCGTGATAAAGGAGGAGAACGGTGGCGCCGGCATTGTG 420
consensus_6443#1      TCCGTGCGCAAAAACAC--AATTCGTGATAAAGGAGGAGAACGGTGGGGC-GGCATTGTG 188
                      *****************  * * ************************ ** *********

consensus_6443#0      CCCGGCGAGGTGTTGTCCGAGAAGGATCGGATCCTGCGCGAAAAGGAGGAGGAAATCCGC 480
consensus_6443#1      CCCGGCGAGGTGTTGTCCGAGAAGGATCGGATCCTGCGCGAAAAGGAGGAGGAAATC-GC 247
                      ********************************************************* **

consensus_6443#0      CGAATGCAGGAGAAGCTCGCCCAGATGCAGGCCAAGTTTCA-GGCACAGAAG-TAA-TTG 537
consensus_6443#1      CGAATGCAGGAGAAGCTCGCCCAGATGCAGGCCAAGTTTCATGGCACAGAAGGTAACTTG 307
                      ***************************************** ********** *** ***

consensus_6443#0      TGGTGTAGTGAAAAGAGGAATATACACACACACACACA-CAAAAGAGGGAAGAAGAGGAT 596
consensus_6443#1      TGGTGTAGTGAAAAGAGGGATATACACACACACACACAACAAAAAGAGGGAANAAAGGAT 367
                      ****************** ******************* *****   ** *  * *****

consensus_6443#0      GGTGATGATGAATCAAGTTAGTTCATGCACATGCACAAAAAAACCCGAAACGAAACGAAA 656
consensus_6443#1      GGTGATGATGAATCAAA------------------------------------------- 384
                      ****************                                            

consensus_6443#0      AAAAAAGAATGTATTTGTGTCCTCTCATGAAATGATTTTTTCGAAAGCATTCATCATTCC 716
consensus_6443#1      ------------------------------------------------------------
                                                                                  

consensus_6443#0      GCGCAGTACGACTCATTAAAAAACAAACCGATTATCGAGTAGTAGTAGTAGTACATGAAT 776
consensus_6443#1      ------------------------------------------------------------
                                                                                  

consensus_6443#0      GGCGTTATTTGCGATAATGGGCCGCTTGTTGCGCCCTGCCAGTAGCCCCCCCGTGGTTTC 836
consensus_6443#1      ------------------------------------------------------------
                                                                                  

consensus_6443#0      GATTGCGTTTAATGCAAAACACAAAACAGTGAGCCCACGCGTTTTGAAATCTTCCTCATT 896
consensus_6443#1      ------------------------------------------------------------
                                                                                  

consensus_6443#0      TTTGTGCATCATCATCATCGTCATCATCATCATCATCATGATTACACATATATTTTTGGT 956
consensus_6443#1      ------------------------------------------------------------
                                                                                  

consensus_6443#0      ACGAACTATTCGCATATAATTGTAGAGTAAAGGTTAGATCGTATAGCATACAAGTATATA 1016
consensus_6443#1      ------------------------------------------------------------
                                                                                  

consensus_6443#0      TATACAGAGCAAACCTTCCACGTTAGTTGCCTCTCCAACAAAACACAGCAGGCCGGGGTA 1076
consensus_6443#1      ------------------------------------------------------------
                                                                                  

consensus_6443#0      AAAACGGGTACTTAAAAAACCAGACCAATTGGCTGCACCCAACCCAAACCCATCTCGAAA 1136
consensus_6443#1      ------------------------------------------------------------
                                                                                  

consensus_6443#0      AACGCTCTCTTGTTTGTTTTGGTTGTTTTTTAGCTTCATTCATAAAGTTGCAGTAGCAGC 1196
consensus_6443#1      ------------------------------------------------------------
                                                                                  

consensus_6443#0      AGCTCATTTTAGGCTCGATGGCTTTCCTTTGTTTTCGGGTAAACGACACGAAATGTCCAA 1256
consensus_6443#1      ------------------------------------------------------------
                                                                                  

consensus_6443#0      TTACGGTACGAGTTCAATTGTGCAGTGGGTAACAACGACACCAAAATTATGCTTTTCCTT 1316
consensus_6443#1      ------------------------------------------------------------
                                                                                  

consensus_6443#0      CTCTCGAGACACCCAGGCCCGGTGTGTTGTACGTCATTCAGCTGCAATTCAATCGCAATA 1376
consensus_6443#1      ------------------------------------------------------------
                                                                                  

consensus_6443#0      ATTTTCTACGGAGACGAAAGTAGAGTAAACGTTAATCCATCCTCCTCCTTACCCCTTTGC 1436
consensus_6443#1      ------------------------------------------------------------
                                                                                  

consensus_6443#0      TCGCGTTTGACACGAAACTAGCGACGAATAAGTAAGGGGAAGGCCAGGCAAGACAGACAG 1496
consensus_6443#1      ------------------------------------------------------------
                                                                                  

consensus_6443#0      GATGGGATGGGGTGTGGTTGTGTCTCGATAATATTT 1532
consensus_6443#1      ------------------------------------
                                                          




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)