These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6443#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1532 fasta sequence [CTGACGAAGAAGGAAATCCAGCGCCTGAAGTGCCGCATCCTGCAGGAGATTGAGGATAATGGGATCAAAATCTATCCACTGCCCGATTGTGATAGCGACGAGGACGAGGACTACAAGGAGCAGGTGCGCCAGCTGAAGGAGGCGGTCCCGTTCGCCGTCTGCGGCTCGACCACGCTGCTCGAGGTGAAGGGCCGCAAGGTGCGCGGTCGGCTTTACCCCTGGGGTGTCGTCGAGGTGGAAAACCCGGACCATTGCGATTTTATCAAGCTTCGCACCATGCTGATCACNCACATGCAANACCTGCAGGAGGTCACGCAGGAGGTGCACTA-CNAAAACTATCGCTCGGAGCGGTTGGCGAAATCCGTGCGCAAAAACACCAATTCCGTGATAAAGGAGGAGAACGGTGGCGCCGGCATTGTGCCCGGCGAGGTGTTGTCCGAGAAGGATCGGATCCTGCGCGAAAAGGAGGAGGAAATCCGCCGAATGCAGGAGAAGCTCGCCCAGATGCAGGCCAAGTTTCAGGCACAGAAGTAATTGTGGTGTAGTGAAAAGAGGAATAT--------ACACACACACACACACAAAAGAGGGAAGAAGAGGATGGTGATGATGAATCAAGTTAGTTCATGCACATGCACAAAAAAACCCGAAACGAAACGAAAAAAAAAGAATGTATTTGTGTCCTCTCATGAAATGATTTTTTCGAAAGCATTCATCATTCCGCGCAGTACGACTCATTAAAAAACAAACCGATTATCGAGTAGTAGTAGTAGTACATGAATGGCGTTATTTGCGATAATGGGCCGCTTGTTGCGCCCTGCCAGTAGCCCCCCCGTGGTTTCGATTGCGTTTAATGCAAAACACAAAACAGTGAGCCCACGCGTTTTGAAATCTTCCTCATTTTTGTGCATCATCATCATCGTCATCATCATCATCATCATGATTACACATATATTTTTGGTACGAACTATTCGCATATAATTGTAGAGTAAAGGTTAGATCGTATAGCATACAAGTATATATATACAGAGCAAACCTTCCACGTTAGTTGCCTCTCCAACAAAACACAGCAGGCCGGGGTAAAAACGGGTACTTAAAAAACCAGACCAATTGGCTGCACCCAACCCAAACCCATCTCGAAAAACGCTCTCTTGTTTGTTTTGGTTGTTTTTTAGCTTCATTCATAAAGTTGCAGTAGCAGCAGCTCATTTTAGGCTCGATGGCTTTCCTTTGTTTTCGGGTAAACGACACGAAATGTCCAATTACGGTACGAGTTCAATTGTGCAGTGGGTAACAACGACACCAAAATTATGCTTTTCCTTCTCTCGAGACACCCAGGCCCGGTGTGTTGTACGTCATTCAGCTGCAATTCAATCGCAATAATTTTCTACGGAGACGAAAGTAGAGTAAACGTTAATCCATCCTCCTCCTTACCCCTTTGCTCGCGTTTGACACGAAACTAGCGACGAATAAGTAAGGGGAAGGCCAGGCAAGACAGACAGGATGGGATGGGGTGTGGTTGTGTCTCGATAATATTT] [+] EMBL BX627353 [CTGACGAAGAAGGAAATCCAGCGCCTGAAGTGCCGCATCCTGCAGGAGATTGAGGATAATGGGATCAAAATCTATCCACTGCCCGATTGTGATAGCGACGAGGACGAGGACTACAAGGAGCAGGTGCGCCAGCTGAAGGAGGCGGTCCCGTTCGCCGTCTGCGGCTCGACCACGCTGCTCGAGGTGAAGGGCCGCAAGGTGCGCGGTCGGCTTTACCCCTGGGGTGTCGTCGAGGTGGAAAACCCGGACCATTGCGATTTTATCAAGCTTCGCACCATGCTGATCACNCACATGCAANACCTGCAGGAGGTCACGCAGGAGGTGCACTACCNAAAACTATCGCTCGGAGCGGTT ] [-] EMBL AGA283485 [ CGCAAGGTGCGCGGTCGGCTTTACCCGTGGGGTGTCGTCGAGGTGAAAAACCCGGACCATTGCGATTTTATCAAGCTTCGCACCATGCTGATCACGCACATGCAAGACCTGCAGGAGGTCACGCAGGAGGTGCACTA CGAAAACTATCGCTCGGAGCGGTTGGCGAAATCCGTGCGCAAAAACACCAATTCCGTGATAAAGGAGGAGAACGGTGGCGCCGGCATTGTGCCCGGCGAGGTGTTGTCCGAGAAGGATCGGATCCTGCGCGAAAAGGAGGAGGAAATCCGCCGAATGCAGGAGAAGCTCGCCCAGATGCAGGCCAAGTTTCAGGCACAGAAGTAATTGTGGTGTAGTGAAAAGAGGAATATATACACCAACACACACACACACACAAAAGAGGGAAGAAGAGGATGGTGATGATGAATCAAGTTAGTTCATGCACATGCACAAAAAAACCCGAAACGAAACGAAAAAAAA ] [+] EMBL BX622772 [ GGTTGGCGAAATCCGTGCGCAAAAACACCAATTCCGTGATAAAGGAGGAGAACGGTGGCGCCGGCATTGTGCCCGGCGAGGTGTTGTCCGAGAAGGATCGGATCCTGCGCGAAAAGGAGGAGGAAATCCGCCGAATGCAGGAGAAGCTCGCCCAGATGCAGGCCAAGTTTCAGGCACAGAAGTAATTGTGGTGTAGTGAAAAGAGGGATAT ACACACACACACACACAAAAGAGGGAAGAAGAGGATGGTGATGATGAATCAAGTTAGTTCATGCACATGCACAAAAAAACCCGAAACGAAACGAACAAAACAGAATGTATTTGTGTCCTCTCATGAAATGATTTTTTCGAAAGCATTCATCATTCCGCGCAGTACGACTCATTAAAAAACAAACCGATTATCGAGTAGTAGTAGTAGTACATGAATGGCGTTATTTGCGATAATGGGCCGCTTGTTGCGCCCTGCCAGTAGCCCCCCCGTGGTTTCGATTGCGTTTAATGCAAAACACAAAACAGTGAGCCCACGCGTTTTGAAATCTTCCTCATTTTTGTGCATCATCATCATCGTCATCATCATCATCATCATGATTACACATATATTTTTGGTACGAACTATTCGCATATAATTGTAGAGTAAAG ] [+] EMBL BM582840 [ ccgCTCATTTTTGTGCATCATCATCATCGTCATCATCATCATCATCATGATTACACATATATTTTTGGTACGAACTATTCGCATATAATTGTAGAGTAAAGGTTAGATCGTATAGCATACAAGTATATATATACAGAGCAAACCTTCCACGTTAGTTGCCTCTCCAACAAAACACAGCAGGCCGGGGTAAAAACGGGTACTTAAAAAACCAGACCAATTGGCTGCACCCAACCCAAACCCATCTCGAAAAACGCTCTCTTGTTTGTTTTGGTTGTTTTTTAGCTTCATTCATAAAGTTGCAGTAGCAGCAGCTCATTTTAGGCTCGATGGCTTTCCTTTGTTTTCGGGTAAACGACACGAAATGTCCAATTACGGTACGAGTTCAATTGTGCAGTGGGTAACAACGACACCAAAATTATGCTTTTCCTTCTCTCGAGACACCCAGGCCCGGTGTGTTGTACGTCATTCAGCTGCAATTCAATCGCAATAATTTTCTACGGAGACGAAAGTAGAGTAAACGTTAATCCATCCTCCTCCTTACCCCTTTGCTCGCGTTTGACACGAAACTAGCGACGAATAAGTAAGGGGAAGGCCAGGCAAGACAGACAGGATGGGATGGGGTGTGGTTGTGTCTCGATAATATTT] consensusID : consensus_6443#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 384 fasta sequence [GAAATTCCAGGTTTACCGGACATTGCGATTTTATCAAGCTTCGCACTATGCTGATCACGCACATGCAAGACCTGCAGGAGGTCACGCAGGAGGTGCACTACGAAAACTATCGCTCGGAGCGGTTGGCGAAATCCGTGCGCAAAAACACAATTCGTGATAAAGGAGGAGAACGGTGGGGCGGCATTGTGCCCGGCGAGGTGTTGTCCGAGAAGGATCGGATCCTGCGCGAAAAGGAGGAGGAAATCGCCGAATGCAGGAGAAGCTCGCCCAGATGCAGGCCAAGTTTCATGGCACAGAAGGTAACTTGTGGTGTAGTGAAAAGAGGGATATACACACACACACACAACAAAAAGAGGGAANAAAGGATGGTGATGATGAATCAAA] [+] EMBL AL695683 [GAAATTCCAGGTTTACCGGACATTGCGATTTTATCAAGCTTCGCACTATGCTGATCACGCACATGCAAGACCTGCAGGAGGTCACGCAGGAGGTGCACTACGAAAACTATCGCTCGGAGCGGTTGGCGAAATCCGTGCGCAAAAACACAATTCGTGATAAAGGAGGAGAACGGTGGGGCGGCATTGTGCCCGGCGAGGTGTTGTCCGAGAAGGATCGGATCCTGCGCGAAAAGGAGGAGGAAATCGCCGAATGCAGGAGAAGCTCGCCCAGATGCAGGCCAAGTTTCATGGCACAGAAGGTAACTTGTGGTGTAGTGAAAAGAGGGATATACACACACACACACAACAAAAAGAGGGAANAAAGGATGGTGATGATGAATCAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6443#0 CTGACGAAGAAGGAAATCCAGCGCCTGAAGTGCCGCATCCTGCAGGAGATTGAGGATAAT 60 consensus_6443#1 ------------------------------------------------------------ consensus_6443#0 GGGATCAAAATCTATCCACTGCCCGATTGTGATAGCGACGAGGACGAGGACTACAAGGAG 120 consensus_6443#1 ------------------------------------------------------------ consensus_6443#0 CAGGTGCGCCAGCTGAAGGAGGCGGTCCCGTTCGCCGTCTGCGGCTCGACCACGCTGCTC 180 consensus_6443#1 ------------------------------------------------------------ consensus_6443#0 GAGGTGAAGGGCCGCAAGGTGCGCGGTCGGCTTTACCCCTGGGGTGTCGTCGAGGTGGAA 240 consensus_6443#1 ------------------------------------------GAAAT--TCCAGGTTTA- 15 * * ** **** * consensus_6443#0 AACCCGGACCATTGCGATTTTATCAAGCTTCGCACCATGCTGATCACNCACATGCAANAC 300 consensus_6443#1 ---CCGGAC-ATTGCGATTTTATCAAGCTTCGCACTATGCTGATCACGCACATGCAAGAC 71 ****** ************************* *********** ********* ** consensus_6443#0 CTGCAGGAGGTCACGCAGGAGGTGCACTACNAAAACTATCGCTCGGAGCGGTTGGCGAAA 360 consensus_6443#1 CTGCAGGAGGTCACGCAGGAGGTGCACTACGAAAACTATCGCTCGGAGCGGTTGGCGAAA 131 ****************************** ***************************** consensus_6443#0 TCCGTGCGCAAAAACACCAATTCCGTGATAAAGGAGGAGAACGGTGGCGCCGGCATTGTG 420 consensus_6443#1 TCCGTGCGCAAAAACAC--AATTCGTGATAAAGGAGGAGAACGGTGGGGC-GGCATTGTG 188 ***************** * * ************************ ** ********* consensus_6443#0 CCCGGCGAGGTGTTGTCCGAGAAGGATCGGATCCTGCGCGAAAAGGAGGAGGAAATCCGC 480 consensus_6443#1 CCCGGCGAGGTGTTGTCCGAGAAGGATCGGATCCTGCGCGAAAAGGAGGAGGAAATC-GC 247 ********************************************************* ** consensus_6443#0 CGAATGCAGGAGAAGCTCGCCCAGATGCAGGCCAAGTTTCA-GGCACAGAAG-TAA-TTG 537 consensus_6443#1 CGAATGCAGGAGAAGCTCGCCCAGATGCAGGCCAAGTTTCATGGCACAGAAGGTAACTTG 307 ***************************************** ********** *** *** consensus_6443#0 TGGTGTAGTGAAAAGAGGAATATACACACACACACACA-CAAAAGAGGGAAGAAGAGGAT 596 consensus_6443#1 TGGTGTAGTGAAAAGAGGGATATACACACACACACACAACAAAAAGAGGGAANAAAGGAT 367 ****************** ******************* ***** ** * * ***** consensus_6443#0 GGTGATGATGAATCAAGTTAGTTCATGCACATGCACAAAAAAACCCGAAACGAAACGAAA 656 consensus_6443#1 GGTGATGATGAATCAAA------------------------------------------- 384 **************** consensus_6443#0 AAAAAAGAATGTATTTGTGTCCTCTCATGAAATGATTTTTTCGAAAGCATTCATCATTCC 716 consensus_6443#1 ------------------------------------------------------------ consensus_6443#0 GCGCAGTACGACTCATTAAAAAACAAACCGATTATCGAGTAGTAGTAGTAGTACATGAAT 776 consensus_6443#1 ------------------------------------------------------------ consensus_6443#0 GGCGTTATTTGCGATAATGGGCCGCTTGTTGCGCCCTGCCAGTAGCCCCCCCGTGGTTTC 836 consensus_6443#1 ------------------------------------------------------------ consensus_6443#0 GATTGCGTTTAATGCAAAACACAAAACAGTGAGCCCACGCGTTTTGAAATCTTCCTCATT 896 consensus_6443#1 ------------------------------------------------------------ consensus_6443#0 TTTGTGCATCATCATCATCGTCATCATCATCATCATCATGATTACACATATATTTTTGGT 956 consensus_6443#1 ------------------------------------------------------------ consensus_6443#0 ACGAACTATTCGCATATAATTGTAGAGTAAAGGTTAGATCGTATAGCATACAAGTATATA 1016 consensus_6443#1 ------------------------------------------------------------ consensus_6443#0 TATACAGAGCAAACCTTCCACGTTAGTTGCCTCTCCAACAAAACACAGCAGGCCGGGGTA 1076 consensus_6443#1 ------------------------------------------------------------ consensus_6443#0 AAAACGGGTACTTAAAAAACCAGACCAATTGGCTGCACCCAACCCAAACCCATCTCGAAA 1136 consensus_6443#1 ------------------------------------------------------------ consensus_6443#0 AACGCTCTCTTGTTTGTTTTGGTTGTTTTTTAGCTTCATTCATAAAGTTGCAGTAGCAGC 1196 consensus_6443#1 ------------------------------------------------------------ consensus_6443#0 AGCTCATTTTAGGCTCGATGGCTTTCCTTTGTTTTCGGGTAAACGACACGAAATGTCCAA 1256 consensus_6443#1 ------------------------------------------------------------ consensus_6443#0 TTACGGTACGAGTTCAATTGTGCAGTGGGTAACAACGACACCAAAATTATGCTTTTCCTT 1316 consensus_6443#1 ------------------------------------------------------------ consensus_6443#0 CTCTCGAGACACCCAGGCCCGGTGTGTTGTACGTCATTCAGCTGCAATTCAATCGCAATA 1376 consensus_6443#1 ------------------------------------------------------------ consensus_6443#0 ATTTTCTACGGAGACGAAAGTAGAGTAAACGTTAATCCATCCTCCTCCTTACCCCTTTGC 1436 consensus_6443#1 ------------------------------------------------------------ consensus_6443#0 TCGCGTTTGACACGAAACTAGCGACGAATAAGTAAGGGGAAGGCCAGGCAAGACAGACAG 1496 consensus_6443#1 ------------------------------------------------------------ consensus_6443#0 GATGGGATGGGGTGTGGTTGTGTCTCGATAATATTT 1532 consensus_6443#1 ------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||