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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6445#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1022 fasta sequence
[ATGAACAAATCGCCACACCGGCGAAATTACAGCAAAGCTACGTTGTAGTTGATCTTGCTAACAAACTGACCATGCTTTGGTCATTCCTGCAAACCCATCCTAAACAAAAAGTTATAGTATTTTTTTCCACTTGCAAACAGGTGAAATATTTCTACCAGGTATTTAAGAAGCTTCGTCCGACCTCTTTACTGTTACCATTGTATGGGGGAATGAACCAAGAAAAGCGTAACAAAATATATGGTGATTTTTGCAAAAAGAAAACAAATGTATGCTTGTTAGCCACAGATGTAGCATCGCGTGGGCTGGACTTCCCTAAGGTTAACTGGGTGGTTCAAATTGATTGCCCCGAAGACGTTGCCCAGTACATACATAGAGCCGGACGAACTGCAAGGTTGAATACAAGTGGTGAAAATTTACTCGTTTTGCTCCCGCACGAAGTAGATCCAATGTTAGATTCTCTAGAAAAGAACAAAATACCTATTAAGCAGATTAAAATTGATGAACGTCAGTTATTTTCACCACTGCTGAAAATCCAATCACTGCTTGCCCAATCCCCAGAATTAAAAGAGAGTGCAAAACGAGCTTTTGTTGCATACATCAAATCAATAGCCCTGATGAAGAATAAGGAAGTGTTTCAATTGCACAATTTAAATTTAGATGAGTTTGCAAACTCTTTANGATTGAGTAACACTCCGCGTGTACGTTTTGTTTCTCGTACGTTGGAAAGGAAACGAAGTAAAATCTTAAATACTTCCGATTCTGAAAGTAAAATCAAAATTACTGGCATCGAAACTAAGGATAGCAGCGATGAAGAACAAGATCTGGATGATTTTCTACGAATTAAACACATTCATAATAGTTCACATTGCTTTGCATCGGATGATCTACAGGCTTCCAATGTTACTACTGAATCAGAAGATGTAAAAAAGATACAAAAAAAACGAATATCTAAGGTCAAGCTAGTAAAGAAGTCCCTACATATGAGTAAACGAATCGTATTTGATGAAGATGGTGCCCCGGTT]
[+] EMBL BX625559 [ATGAACAAATCGCCACACCGGCGAAATTACAGCAAAGCTACGTTGTAGTTGATCTTGCTAACAAACTGACCATGCTTTGGTCATTCCTGCAAACCCATCCTAAACAAAAAGTTATAGTATTTTTTTCCACTTGCAAACAGGTGAAATATTTCTACCAGGTATTTAAGAAGCTTCGTCCGACCTCTTTACTGTTACCATTGTATGGGGGAATGAACCAAGAAAAGCGTAACAAAATATATGGTGATTTTTGCAAAAAGAAAACAAATGTATGCTTGTTAGCCACAGATGTAGCATCGCGTGGGCTGGACTTCCCTAAGGTTAACTGGGTGGTTCAAATTGATTGCCCCGAAGACGTTGCCCAGTACATACATAGAGCCGGACGAACTGCAAGGTTGAATACAAGTGGTGAAAATTTACTCGTTTTGCTCCCGCACGAAGTAGATCCAATGTTAGATTCTCTAGAAAAGAACAAAATACCTATTAAGCAGATTAAAATTGATGAACGTCAGTTATTTTCACCACTGCTGAAAATCCAATCACTGCTTGCCCAATCCCCAGAATTAAAAGAGAGTGCAAAACGAGCTTTTGTTGCATACATCAAATCAATAGCCCTGATGAAGAATAAGGAAGTGTTTCAATTGCACAATTTAAATTTAGATGAGTTTGCAAACTCTTTANGATTGAGTAACACTCCGCGTGTACGTTTTGTTTCTCGTA ]
[+] EMBL BX609234 [ ATGTAGCATCGCGTGGGCTGGACTTCCCTAAGGTTAACTGGGTGGTTCAAATTGATTGCCCCGAAGACGTTGCCCAGTACATACATAGAGCCGGACGAACTGCAAGGTTGAATACAAGTGGTGAAAATTTACTCGTTTTGCTCCCGCACGAAGTAGATCCAATGTTAGATTCTCTAGAAAAGAACAAAATACCTATTAAGCAGATTAAAATTGATGAACGTCAGTTATTTTCACCACTGCTGAAAATCCAATCACTGCTTGCCCAATCCCCAGAATTAAAAGAGAGTGCAAAACGAGCTTTTGTTGCATACATCAAATCAATAGCCCTGATGAAGAATAAGGAAGTGTTTCAATTGCACAATTTAAATTTAGACGAGTTTGCAAACTCTTTAGGATTGAGTAACACTCCGCGTGTACGTTTTGTTTCTCGTACGTTGGAAAGGAAACGAAGTAAAATCTTAAATACTTCCGATTCTGAAAGTAAAATCAAAATTACTGGCATCGAAACTAAGGATAGCAGCGATGAAGAACAAGATCTGGATGATTTTCTACGAATTAAACACATTCATAATAGTTCACATTGCTTTGCATCGGATGATCTACAGGCTTCCAATGTTACTACTGAATCAGAAGATGTAAAAAAGATACAAAAAAAACGAATATCTAAGGTCAAGCTAGTAAAGAAGTCCCTACATATGAGTAAACGAATCGTATTTGATGAAGATGGTGCCCCGGTT]
consensusID : consensus_6445#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 858 fasta sequence
[GATCGCACGAGGTGTAGCATACATCAAATCAATAGCCCTGATGAAGAATAANTGAAGTGTTTCAATTGCACAATTTAAATTGTAGATGAGTTTGCAAACTCTTTAGGATTGAGTAACACTCCGCGTGTACGTTTTGTTTCTCGTACGTTGGAAAGGAAACGAAGTAAAATCTTAAATACTTCCGATTCTGAAAGTAAAATCAAAATTACTGGCATCGAAACTAAGGATAGCAGCGATGAAGAACAAGATCTGGATGATTTTCTACGAATTAAACACATTCATAATAGTTCACATTGCTTTGCATCGGATGATCTACAGGCTTCCAATGTTACTACTGAATCAGAAGATGTCAAAAAGATACAAAAAAAACGAATATCTAAGGTCAAGCTAGTAAAGAAGTCCCTACATATGAGTAAACGAATCGTATTTGATGAAGCATGGTGCCCCGGTTAATACAAACGGTGAGCAATCGAACAAGTTCTACGATTTTAAAGATGCACGGTTTAGACTAGAACAACAAGATGCGGATGATNAAAAGCGTTATAAAGCATTAAAGAAAGCAAAAAGGAATGATTATACACAAGAACAGGAACGTAAAAGGCAAGTTGACGATACTTGTGTTCTGGGTGATGATTTTGGGNAG-GAAAGCGAAAATAGCGTTTCTACTTGATTGGGTTACTGATCCGGATAAAGTGTATGGAAAAAGAAATCATAATGGAAAACAAGTAGATTATAAACACGCTTCAGGAAGCTATGATTTTAAAGATACAGTCAAAAGAATACATGTACTTCAAAATGCTCAAGCATTGTCCTTAAATGATACAGAACNACTGGCCATTAATTTGCTAAAATAGTATT]
[+] EMBL AL697043 [GATCGCACGAGGTGTAGCATACATCAAATCAATAGCCCTGATGAAGAATAANTGAAGTGTTTCAATTGCACAATTTAAATTGTAGATGAGTTTGCAAACTCTTTAGGATTGAGTAACACTCCGCGTGTACGTTTTGTTTCTCGTACGTTGGAAAGGAAACGAAGTAAAATCTTAAATACTTCCGATTCTGAAAGTAAAATCAAAATTACTGGCATCGAAACTAAGGATAGCAGCGATGAAGAACAAGATCTGGATGATTTTCTACGAATTAAACACATTCATAATAGTTCACATTGCTTTGCATCGGATGATCTACAGGCTTCCAATGTTACTACTGAATCAGAAGATGTCAAAAAGATACAAAAAAAACGAATATCTAAGGTCAAGCTAGTAAAGAAGTCCCTACATATGAGTAAACGAATCGTATTTGATGAAGCATGGTGCCCCGGTTAATACAAACGGTGAGCAATCGAACAAGTTCTACGATTTTAAAGATGCACGGTTTAGACTAGAACAACAAGATGCGGATGATNAAAAGCGTTATAAAGCATTAAAGAAAGCAAAAAGGAATGATTATACACAAGAACAGGAACGTAAAAGGCAAGTTGACGATACTTGTGTTCTGGGTGATGATTTTGGGNAG GAAAGCGAAAATAGCGTTTCTACTTGATTGGGTTACTGA ]
[+] EMBL BX622815 [ TTGCAAACTCTTTAGGATTGAGTAACACTCCGCGTGTACGTTTTGTTTCTCGTACGTTGGAAAGGAAACGAAGTAAAATCTTAAATACTTCCGATTCTGAAAGTAAAATCAAAATTACTGGCATCGAAACTAAGGATAGCAGCGATGAAGAACAAGATCTGGATGATTTTCTACGAATTAAACACATTCATAATAGTTCACATTGCTTTGCATCGGATGATCTACAGGCTTCCAATGTTACTACTGAATCAGAAGATGTAAAAAAGATACAAAAAAAACGAATATCTAAGGTCAAGCTAGTAAAGAAGTCCCTACATATGAGTAAACGAATCGTATTTGATGAAG ATGGTGCCCCGGTTAATACAAACGGTGAGCAATCGAACAAGTTCTACGATTTTAAAGATGCACGGTTTAGACTAGAACAACAAGATGCGGATGATAAAAAGCGTTATAAAGCATTAAAGAAAGCAAAAA GAATGATTATA A AAGAAAAGGAACGTAAAAGGCAAGTTGACGATTCTTGTGTTCTGGCTGATGATTTT GGCAGCGAAAGCGAAAATAGCGTTTCT CTTGATTGGCTTCCTGATCCGGATAAAGTGTATGGAAAAAGAAATCATAATGGAAAACAAGTAGATTATAAACACGCTTCAGGAAGCTATGATTTTAAAGATACAGTCAAAAGAATACATGTACTTCAAAATGCTCAAGCATTGTCCTTAAATGATACAGAACNACTGGCCATTAATTTGCTAAAATAGTATT]
consensusID : consensus_6445#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 837 fasta sequence
[GAATCCCCCGAGGTTAACGTCAGTTATTTTCACCACTGCTGAAAATCCAATCACTGCTTGCCCAATCCCCAGAATTAAAAGAGAGTGCAAAACGAGCTTTTGTTGCATACATCAAATCAATAGCCCTGATGAAGAATAAGGAAGTGTTTCAATTGCACAATTTAAATTTAGATGAGTTTGCAAACTCTTTAGGATTGAGTAACACTCCGCGTGTACGTTTGTTTCTCGTACGTTGGAAAGGAAACGAAGTAAAATCTTAAATACTTCCGATTCTGAAAGTAAAATCAAAATTACTGGCATCGAAACTAAGGATAGCAGCGATGAAGAACAAGATCTGGATGATTTTCTACGAATTAAACACATTCATAATAGTTCACATTGCTTTGCATCGGATGATCTACAGGCTTCCAATGTTACTACTGAATCAGAAGATGTACNAAAAGATACAAAAAAAACGAATATCTAAGGTCAAGCTAGTAANAGAAGTCCCTACATATGAGTAAACGAATCGTATTTGATGAAGATGGTGCCCCGGTTAATACAAACCGGTGAGCAATCGAACAAGTTCTACGATTTTAAAGATGCACGGGTTTAAGAACTCANAAACCAACCAAGCATGCGGCATGGCATAANACAGCGTTGATTAAGCCATTTANACAGCAAAAGCCAACAACAGCAATGATTATACAACNGAACAGGGAACCGTAAAAGGGCAAGCTTGCACGCATTCTTGGTGTNCTGGCCTGATGCATTCTCTGGCCANCGGAAAAGCGANAATAAGCGTCCTCTTGATNGGCTTCCTGATCCGGCATANAGTGNNTGGCANANACGCANCNA]
[+] EMBL AL694901 [GAATCCCCCGAGGTTAACGTCAGTTATTTTCACCACTGCTGAAAATCCAATCACTGCTTGCCCAATCCCCAGAATTAAAAGAGAGTGCAAAACGAGCTTTTGTTGCATACATCAAATCAATAGCCCTGATGAAGAATAAGGAAGTGTTTCAATTGCACAATTTAAATTTAGATGAGTTTGCAAACTCTTTAGGATTGAGTAACACTCCGCGTGTACGTTTGTTTCTCGTACGTTGGAAAGGAAACGAAGTAAAATCTTAAATACTTCCGATTCTGAAAGTAAAATCAAAATTACTGGCATCGAAACTAAGGATAGCAGCGATGAAGAACAAGATCTGGATGATTTTCTACGAATTAAACACATTCATAATAGTTCACATTGCTTTGCATCGGATGATCTACAGGCTTCCAATGTTACTACTGAATCAGAAGATGTACNAAAAGATACAAAAAAAACGAATATCTAAGGTCAAGCTAGTAANAGAAGTCCCTACATATGAGTAAACGAATCGTATTTGATGAAGATGGTGCCCCGGTTAATACAAACCGGTGAGCAATCGAACAAGTTCTACGATTTTAAAGATGCACGGGTTTAAGAACTCANAAACCAACCAAGCATGCGGCATGGCATAANACAGCGTTGATTAAGCCATTTANACAGCAAAAGCCAACAACAGCAATGATTATACAACNGAACAGGGAACCGTAAAAGGGCAAGCTTGCACGCATTCTTGGTGTNCTGGCCTGATGCATTCTCTGGCCANCGGAAAAGCGANAATAAGCGTCCTCTTGATNGGCTTCCTGATCCGGCATANAGTGNNTGGCANANACGCANCNA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6445#1 ------------------------------------------------------------
consensus_6445#2 ------------------------------------------------------------
consensus_6445#0 ATGAACAAATCGCCACACCGGCGAAATTACAGCAAAGCTACGTTGTAGTTGATCTTGCTA 60
consensus_6445#1 ------------------------------------------------------------
consensus_6445#2 ------------------------------------------------------------
consensus_6445#0 ACAAACTGACCATGCTTTGGTCATTCCTGCAAACCCATCCTAAACAAAAAGTTATAGTAT 120
consensus_6445#1 ------------------------------------------------------------
consensus_6445#2 ------------------------------------------------------------
consensus_6445#0 TTTTTTCCACTTGCAAACAGGTGAAATATTTCTACCAGGTATTTAAGAAGCTTCGTCCGA 180
consensus_6445#1 ------------------------------------------------------------
consensus_6445#2 ------------------------------------------------------------
consensus_6445#0 CCTCTTTACTGTTACCATTGTATGGGGGAATGAACCAAGAAAAGCGTAACAAAATATATG 240
consensus_6445#1 ------------------------------------------------------------
consensus_6445#2 ------------------------------------------------------------
consensus_6445#0 GTGATTTTTGCAAAAAGAAAACAAATGTATGCTTGTTAGCCACAGATGTAGCATCGCGTG 300
consensus_6445#1 ------------------------------------------------------------
consensus_6445#2 ------------------------------------------------------------
consensus_6445#0 GGCTGGACTTCCCTAAGGTTAACTGGGTGGTTCAAATTGATTGCCCCGAAGACGTTGCCC 360
consensus_6445#1 ------------------------------------------------------------
consensus_6445#2 ------------------------------------------------------------
consensus_6445#0 AGTACATACATAGAGCCGGACGAACTGCAAGGTTGAATACAAGTGGTGAAAATTTACTCG 420
consensus_6445#1 ------------------------------------------------------------
consensus_6445#2 ------------------------------------------------------------
consensus_6445#0 TTTTGCTCCCGCACGAAGTAGATCCAATGTTAGATTCTCTAGAAAAGAACAAAATACCTA 480
consensus_6445#1 ------------------------------------------------------------
consensus_6445#2 ------GAATCCCCCGAGGTTAACGTCAGTTATTTTCACCACTGCTGAAAATCCAATCAC 54
consensus_6445#0 TTAAGCAGATTAAAATTGATGAACGTCAGTTATTTTCACCACTGCTGAAAATCCAATCAC 540
consensus_6445#1 ----------------------------GATCGCACGAGG------TGTAGCATACATCA 26
consensus_6445#2 TGCTTGCCCAATCCCCAGAATTAAAAGAGAGTGCAAAACGAGCTTTTGTTGCATACATCA 114
consensus_6445#0 TGCTTGCCCAATCCCCAGAATTAAAAGAGAGTGCAAAACGAGCTTTTGTTGCATACATCA 600
** *** * * *** **********
consensus_6445#1 AATCAATAGCCCTGATGAAGAATAANTGAAGTGTTTCAATTGCACAATTTAAATTGTAGA 86
consensus_6445#2 AATCAATAGCCCTGATGAAGAATAAG-GAAGTGTTTCAATTGCACAATTTAAATT-TAGA 172
consensus_6445#0 AATCAATAGCCCTGATGAAGAATAAG-GAAGTGTTTCAATTGCACAATTTAAATT-TAGA 658
************************* **************************** ****
consensus_6445#1 TGAGTTTGCAAACTCTTTAGGATTGAGTAACACTCCGCGTGTACGTTTTGTTTCTCGTAC 146
consensus_6445#2 TGAGTTTGCAAACTCTTTAGGATTGAGTAACACTCCGCGTGTACGTTT-GTTTCTCGTAC 231
consensus_6445#0 TGAGTTTGCAAACTCTTTANGATTGAGTAACACTCCGCGTGTACGTTTTGTTTCTCGTAC 718
******************* **************************** ***********
consensus_6445#1 GTTGGAAAGGAAACGAAGTAAAATCTTAAATACTTCCGATTCTGAAAGTAAAATCAAAAT 206
consensus_6445#2 GTTGGAAAGGAAACGAAGTAAAATCTTAAATACTTCCGATTCTGAAAGTAAAATCAAAAT 291
consensus_6445#0 GTTGGAAAGGAAACGAAGTAAAATCTTAAATACTTCCGATTCTGAAAGTAAAATCAAAAT 778
************************************************************
consensus_6445#1 TACTGGCATCGAAACTAAGGATAGCAGCGATGAAGAACAAGATCTGGATGATTTTCTACG 266
consensus_6445#2 TACTGGCATCGAAACTAAGGATAGCAGCGATGAAGAACAAGATCTGGATGATTTTCTACG 351
consensus_6445#0 TACTGGCATCGAAACTAAGGATAGCAGCGATGAAGAACAAGATCTGGATGATTTTCTACG 838
************************************************************
consensus_6445#1 AATTAAACACATTCATAATAGTTCACATTGCTTTGCATCGGATGATCTACAGGCTTCCAA 326
consensus_6445#2 AATTAAACACATTCATAATAGTTCACATTGCTTTGCATCGGATGATCTACAGGCTTCCAA 411
consensus_6445#0 AATTAAACACATTCATAATAGTTCACATTGCTTTGCATCGGATGATCTACAGGCTTCCAA 898
************************************************************
consensus_6445#1 TGTTACTACTGAATCAGAAGATGT-CAAAAAGATACAAAAAAAACGAATATCTAAGGTCA 385
consensus_6445#2 TGTTACTACTGAATCAGAAGATGTACNAAAAGATACAAAAAAAACGAATATCTAAGGTCA 471
consensus_6445#0 TGTTACTACTGAATCAGAAGATGT-AAAAAAGATACAAAAAAAACGAATATCTAAGGTCA 957
************************ *********************************
consensus_6445#1 AGCTAGTAAA-GAAGTCCCTACATATGAGTAAACGAATCGTATTTGATGAAGCATGGTGC 444
consensus_6445#2 AGCTAGTAANAGAAGTCCCTACATATGAGTAAACGAATCGTATTTGATGAAG-ATGGTGC 530
consensus_6445#0 AGCTAGTAAA-GAAGTCCCTACATATGAGTAAACGAATCGTATTTGATGAAG-ATGGTGC 1015
********* ***************************************** *******
consensus_6445#1 CCCGGTTAATACAAAC-GGTGAGCAATCGAACAAGTTCTACGATTTTAAAGATGCACGGT 503
consensus_6445#2 CCCGGTTAATACAAACCGGTGAGCAATCGAACAAGTTCTACGATTTTAAAGATGCACGGG 590
consensus_6445#0 CCCGGTT----------------------------------------------------- 1022
*******
consensus_6445#1 TT---AGACTAGAACAACAAG-----ATGCGG-ATG--ATNAAA-AGCGTT-ATAAAGCA 550
consensus_6445#2 TTTAAGAACTCANAAACCAACCAAGCATGCGGCATGGCATAANACAGCGTTGATTAAGCC 650
consensus_6445#0 ------------------------------------------------------------
consensus_6445#1 TTAAAGAAAGCAAAA---------AGGAATGATTATACACAAGAACAGGAA--CGTAAAA 599
consensus_6445#2 ATTTANACAGCAAAAGCCAACAACAGCAATGATTATACAACNGAACAGGGAACCGTAAAA 710
consensus_6445#0 ------------------------------------------------------------
consensus_6445#1 GG-CAAGTTGACG---ATACTTG-TGTTCTGGG-TGATGATTT---TGG---GNAGGAAA 647
consensus_6445#2 GGGCAAGCTTGCACGCATTCTTGGTGTNCTGGCCTGATGCATTCTCTGGCCANCGGAAAA 770
consensus_6445#0 ------------------------------------------------------------
consensus_6445#1 GCGAAAATAGCGTTTCTACTTGATTGGGTTACTGATCCGG-ATAAAGTGTATGGAAAAAG 706
consensus_6445#2 GCGANAATAA-GCGTCCTCTTGATNGGCTTCCTGATCCGGCATANAGTGNNTGGCANANA 829
consensus_6445#0 ------------------------------------------------------------
consensus_6445#1 AAATCATAATGGAAAACAAGTAGATTATAAACACGCTTCAGGAAGCTATGATTTTAAAGA 766
consensus_6445#2 CGCANCNA---------------------------------------------------- 837
consensus_6445#0 ------------------------------------------------------------
consensus_6445#1 TACAGTCAAAAGAATACATGTACTTCAAAATGCTCAAGCATTGTCCTTAAATGATACAGA 826
consensus_6445#2 ------------------------------------------------------------
consensus_6445#0 ------------------------------------------------------------
consensus_6445#1 ACNACTGGCCATTAATTTGCTAAAATAGTATT 858
consensus_6445#2 --------------------------------
consensus_6445#0 --------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||