These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6451#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1371 fasta sequence [CATCCATCCTCTGCCACAGGTCCTCTTCTCATGGTGATTGCTCAACACTCTTCCCACTATCAATAAATGCAGCTGTCTGTCTTCTGTCGTTCTAACGTGTTTTGTTGTGCTCTTTTGCTTACAGTAAAAGGTGCTGTCACGAGGATTTTAAAGTACATCATACATATTGTCGTATAGAAAAAAACATGTGTCGTGTATTTTAACGCAACACAACCGTGCCACCCGCGCCACAAACTCTGTTGCTTAACTAAGCGCGTTGTGTGTCGCGTCTTATATTCTGTGTACAAAACTTGGAAGGAAGCTCTAGGAGATGTAAAGTTTACACAGTTTCTTCTTCGCGTGCATTTCCGATGCGGATAGTGTAGTGAAGGAATTGTAAAAAAGGCGCGCTACACACGCTGGTGGCTCTCACCAAAAACGTATTAAATGATCCATCTGCACTCTCACTCTCTTGGTTAGCCAGCCAAAAAAAAACAATGATTCTCTCTCAATAATGTCGTCATCCGTTTCCGGA-GTTGTCTTCCCTTTATAAACCGGTACACAACTTTGTTTGGCACTAGAAAGAGGACGTTATAATATTCGTGCGCTCACAGAGCGTTACAGAGTCAGTGTTTCGAACACATTCATTCCTATTTACCCCCCAACTCTCCCAACGACGCCACATCTACATCTTCGTTTCGTGCGATATTCTTTCGCAGCTATAATACAACACTTTAAAACAACCACCCCCTCTTCCCCTCTGTCCCCTTCTGACCTTCTGAATCCTTCGTATGAATCCTGAATGAGCGCGTTTGTGTCTGTGCTTTATCCATACACAAAACAAACAAACAATTCCTCTCCCCTCCCCCTCCTCCTT-AAGGCACAGAGTTGGTCGCGATCGCGATCGGCCAGGTGACCGGGCCCTTCATCACGATATCGGCCAGGCTTTGCTTAATCTTAATGAACCGCCGTTTAAACTCCAGCCCGCAGCCCTTCGACAGCCGAAAGTCGCACAGGATCTTACCATCCATCTCGACGATGTTCGCCTTAAAGATCAGCTGCAGCTTCCGCCGATCGATCGTCGATATCGTAATCACGCCCTCGTCGTTCGATTTCCAGCCGTAGCCAAGCTTTTCCAGCACGGCCGATAACCGTTTCAGCGTTTCGTCGCAGCGCGCCGACACGAAGAAGCGGGTCATGCGCCGGACCAGGCGTTGGAACGGATTCTGCTGCTGCTGCTGCGTGCCAACGCTCTGCGTCGGGGTTGAGCTGCGTGCAGAGGATCAGATCGTCCAGCATGGTTGGCTGCGAGAAGCAGAACCCGTTCCGGGCCTCGATCGCTTCCTCCACACCGTTCATCTCGGTGTGCACGGTCATTGGGACGGGTTGCGA] [-] EMBL BX620952 [CATCCATCCTCTGCCACAGGTCCTCTTCTCATGGTGATTGCTCAACACTCTTCCCACTATCAATAAATGCAGCTGTCTGTCTTCTGTCGTTCTAACGTGTTTTGTTGTGCTCTTTTGCTTACAGTAAAAGGTGCTGTCACGAGGATTTTAAAGTACATCATACATATTGTCGTATAGAAAAAAACATGTGTCGTGTATTTTAACGCAACACAACCGTGCCACCCGCGCCACAAACTCTGTTGCTTAACTAAGCGCGTTGTGTGTCGCGTCTTATATTCTGTGTACAAAACTTGGAAGGAAGCTCTAGGAGATGTAAAGTTTACACAGTTTCTTCTTCGCGTGCATTTCCGATGCGGATAGTGTAGTGAAGGAATTGTAAAAAAGGCGCGCTACACACGCTGGTGGCTCTCACCAAAAACGTATTAAATGATCCATCTGCACTCTCACTCTCTTGGTTAGCCAGCCAAAAAAAAACAATGATTCTCTCTCAATAATGTCGTCATCCGTTTCCGGATGTTGTCTTCCCTTTATAAACCGGTACACAATTTTGTTTGGCACTAGAAAGAGGACGTTATAATATTCGTGCGCTCACAGA ] [+] EMBL CNS08W7D [ CGTTTCCGGA GTTGTCTTCCCTTTATAAACCGGTACACAACTTTGTTTGGCACTAGAAAGAGGACGTTATAATATTCGTGCGCTCACAGAGCGTTACAGAGTCAGTGTTTCGAACACATTCATTCCTATTTACCCCCCAACTCTCCCAACGACGCCACATCTACATCTTCGTTTCGTGCGATATTCTTTCGCAGCTATAATACAACACTTTAAAACAACCACCC ] [+] EMBL CNS08UQI [ TTTCCGGA GTTGTCTTCCCTTTATAAACCGGTACACAACTTTGTTTGGCACTAGAAAGAGGACGTTATAATATTCGTGCGCTCACAGAGCGTTACAGAGTCAGTGTTTCGAACACATTCATTCCTATTTACCCCCCAACTCTCCCAACGACGCCACAACTACATCTTCGTTTCGTGCGATATTCTTTCGCAGCTATAATACAACACTTTAAAACAACTATCCCCTCTTCCCCTCTGTCCCCTTCTGACCTTCTGAATCCTTCGTATGAATCCTGAATGAGCGCGTTTGTGTCTGTGCTTTATCCATACACAAAACAAACAAACAATTCCTCTCCCCTCCCCCTCCTCCTT AAGGCACAGAGTTGGTCGCGATCGCGATCGGCCAGGTGACCGGGCCCTTCATCACGATATCGGCCAGGCTTTGCTTAATCTTAATGAACCGCCGTTTAAACTCCAGCCCGCAGCCCTTCGACAGCCGAAAGTCGCACAGGATCTTACCATCCATCTCGACGATGTTCGCCTTAAAGATCAGCTGCAGCTTCCGCCGATCGATCGTCGATATCGTAATCACGCCCTCGTCGTTCGATTTCCAGCCGTAGCCAAGCTTTTCCAGCACGGCCGATAACCGTTTCAGCGTTTCGTCGCAGCGCGCCGACACGAAGAAGCGGGTCATGCGCCGGACCAGGCGTTGGAACGGATTCTGCTGCTGCTGCTGCGTGCCAACGCTCTGCGTCGGGGTTGAGCTGCGTGCAGAGGATCAGATCGTCCAGCATGGTTGGCTGCGAGAAGCAGAACCCGTTCCGGGCCTCGATCGCTTCCTCCACACCGTTCATCTCGGTGTGCACGGTCATTGGGACGGGTTGCGA] [-] EMBL BM598128 [ CGTTTGTGTCTGTGTTTTATCCACACACAA GAACAAATAATTCGTCTCCCCTCCCCCTCCTCCTTAAAGGCACAGAGTTGGTCGCGATCGCGATCGGCCAGGTGACCGGGCCCTTCATCACGATATCGGCCAGGCTTTGCTTAATCTTAATGAACCGCCGTTTAAACTCCAGCCCGCAGCCCTTCGACAGCCGAAAGTCGCACAGGATCTTACCATCCATCTCGACGATGTTCGCCTTAAAGATCAGCTGCAGCTTCCGCCGATCGATCGTCGATATCGTAATCACGCCCTCGTCGTTCGATTTCCAGCCGTAGCCAAGCTTTTCCAGCACGGCCGATAACCGTTTCAGCGTTTCGTCGCAGCGCGTCGACACGAAGAAGCGGGTCATGCGCCGGACCAGGCGTTGGAACGGATTCTGCTGCTGCTGCTGCGTGCCAACGCTCTGCGTC GGGTTGAGCTGCGTGCAGAGGATCAGATCGTCCAGCATGGTTGGCTGCGAGAAGCcgg ] consensusID : consensus_6451#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 701 fasta sequence [GGTCCTCTCATGGTGATTGCTCAACACTCTTCCCACTATCAATAAATGCAGCTGTCTGTCTTCTGTCGTTCTAACGTGTTTTGTTGTGCTCTTTTGCTTACAGTAAAAGGTGCTGTCACGAGGATTTTAAAGTACATCATACATATTGTCGTATAGAAAAAAACATGTGTCGTGTATTTTAACGCAACACAACCGTGCCACCCTCGCCACAAACTCTGTTGCTTAACTAAGCCGCGTTGTGTGTCGCGTCTTATATTCTGTGTACAAAAATTGGAAGGAAGCTCTAGGAGATGTAAAGTTTACACAGTTTCTTCTTCGCGTGCATTTCGATGCGGATAGTGTAGTGAAGGAATTGTAAAAAAGGCGCGCTACACACGCTGGTGGCTCTCACCAAAAACGTATTAAATGATCCATCTGCACTCTCACTCTCTGTGTTAGCCAGCCAAAAAAAACAATGATTCTCAATAATGTCGGTCATCCGTTTCCGGATGTTGTCTTCCCTTTATAAACCGGTACACAACTTTGTTTGGCACTAGAAAGAGGACGTTATAATATTCGTGCGCTCACAGAGCGTATCAGAGTCAGTGTTTCGAACACATTCATTCCTATTTACCCATCAACTCTCCCAACCACACCACATCTACATCTTCGTTTCGTGTGATATTCTTTCGCAGCTATAATACAACCGGACGCGTGGGCGG] [-] EMBL BM605223 [GGTCCTCTCATGGTGATTGCTCAACACTCTTCCCACTATCAATAAATGCAGCTGTCTGTCTTCTGTCGTTCTAACGTGTTTTGTTGTGCTCTTTTGCTTACAGTAAAAGGTGCTGTCACGAGGATTTTAAAGTACATCATACATATTGTCGTATAGAAAAAAACATGTGTCGTGTATTTTAACGCAACACAACCGTGCCACCCTCGCCACAAACTCTGTTGCTTAACTAAGCCGCGTTGTGTGTCGCGTCTTATATTCTGTGTACAAAAATTGGAAGGAAGCTCTAGGAGATGTAAAGTTTACACAGTTTCTTCTTCGCGTGCATTTCGATGCGGATAGTGTAGTGAAGGAATTGTAAAAAAGGCGCGCTACACACGCTGGTGGCTCTCACCAAAAACGTATTAAATGATCCATCTGCACTCTCACTCTCTGTGTTAGCCAGCCAAAAAAAACAATGATTCTCAATAATGTCGGTCATCCGTTTCCGGATGTTGTCTTCCCTTTATAAACCGGTACACAACTTTGTTTGGCACTAGAAAGAGGACGTTATAATATTCGTGCGCTCACAGAGCGTATCAGAGTCAGTGTTTCGAACACATTCATTCCTATTTACCCATCAACTCTCCCAACCACACCACATCTACATCTTCGTTTCGTGTGATATTCTTTCGCAGCTATAATACAACCGGACGCGTGGGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6451#0 CATCCATCCTCTGCCACAGGTCCTCTTCTCATGGTGATTGCTCAACACTCTTCCCACTAT 60 consensus_6451#1 ---------------------GGTCCTCTCATGGTGATTGCTCAACACTCTTCCCACTAT 39 ** ********************************** consensus_6451#0 CAATAAATGCAGCTGTCTGTCTTCTGTCGTTCTAACGTGTTTTGTTGTGCTCTTTTGCTT 120 consensus_6451#1 CAATAAATGCAGCTGTCTGTCTTCTGTCGTTCTAACGTGTTTTGTTGTGCTCTTTTGCTT 99 ************************************************************ consensus_6451#0 ACAGTAAAAGGTGCTGTCACGAGGATTTTAAAGTACATCATACATATTGTCGTATAGAAA 180 consensus_6451#1 ACAGTAAAAGGTGCTGTCACGAGGATTTTAAAGTACATCATACATATTGTCGTATAGAAA 159 ************************************************************ consensus_6451#0 AAAACATGTGTCGTGTATTTTAACGCAACACAACCGTGCCACCCGCGCCACAAACTCTGT 240 consensus_6451#1 AAAACATGTGTCGTGTATTTTAACGCAACACAACCGTGCCACCCTCGCCACAAACTCTGT 219 ******************************************** *************** consensus_6451#0 TGCTTAACTAAGC-GCGTTGTGTGTCGCGTCTTATATTCTGTGTACAAAACTTGGAAGGA 299 consensus_6451#1 TGCTTAACTAAGCCGCGTTGTGTGTCGCGTCTTATATTCTGTGTACAAAAATTGGAAGGA 279 ************* ************************************ ********* consensus_6451#0 AGCTCTAGGAGATGTAAAGTTTACACAGTTTCTTCTTCGCGTGCATTTCCGATGCGGATA 359 consensus_6451#1 AGCTCTAGGAGATGTAAAGTTTACACAGTTTCTTCTTCGCGTGCATTTC-GATGCGGATA 338 ************************************************* ********** consensus_6451#0 GTGTAGTGAAGGAATTGTAAAAAAGGCGCGCTACACACGCTGGTGGCTCTCACCAAAAAC 419 consensus_6451#1 GTGTAGTGAAGGAATTGTAAAAAAGGCGCGCTACACACGCTGGTGGCTCTCACCAAAAAC 398 ************************************************************ consensus_6451#0 GTATTAAATGATCCATCTGCACTCTCACTCTCTTGGTTAGCCAGCCAAAAAAAAACAATG 479 consensus_6451#1 GTATTAAATGATCCATCTGCACTCTCACTCTCTGTGTTAGCCAGCCAAAAAAAA-CAATG 457 ********************************* ******************* ***** consensus_6451#0 ATTCTCTCTCAATAATGTCG-TCATCCGTTTCCGGA-GTTGTCTTCCCTTTATAAACCGG 537 consensus_6451#1 ATTCTC----AATAATGTCGGTCATCCGTTTCCGGATGTTGTCTTCCCTTTATAAACCGG 513 ****** ********** *************** *********************** consensus_6451#0 TACACAACTTTGTTTGGCACTAGAAAGAGGACGTTATAATATTCGTGCGCTCACAGAGCG 597 consensus_6451#1 TACACAACTTTGTTTGGCACTAGAAAGAGGACGTTATAATATTCGTGCGCTCACAGAGCG 573 ************************************************************ consensus_6451#0 TTACAGAGTCAGTGTTTCGAACACATTCATTCCTATTTACCCCCCAACTCTCCCAACGAC 657 consensus_6451#1 TATCAGAGTCAGTGTTTCGAACACATTCATTCCTATTTACCCATCAACTCTCCCAACCAC 633 * *************************************** ************* ** consensus_6451#0 GCCACATCTACATCTTCGTTTCGTGCGATATTCTTTCGCAGCTATAATACAACACTTTAA 717 consensus_6451#1 ACCACATCTACATCTTCGTTTCGTGTGATATTCTTTCGCAGCTATAATACAACCGGACGC 693 ************************ *************************** consensus_6451#0 AACAACCACCCCCTCTTCCCCTCTGTCCCCTTCTGACCTTCTGAATCCTTCGTATGAATC 777 consensus_6451#1 GTGGGCGG---------------------------------------------------- 701 * consensus_6451#0 CTGAATGAGCGCGTTTGTGTCTGTGCTTTATCCATACACAAAACAAACAAACAATTCCTC 837 consensus_6451#1 ------------------------------------------------------------ consensus_6451#0 TCCCCTCCCCCTCCTCCTTAAGGCACAGAGTTGGTCGCGATCGCGATCGGCCAGGTGACC 897 consensus_6451#1 ------------------------------------------------------------ consensus_6451#0 GGGCCCTTCATCACGATATCGGCCAGGCTTTGCTTAATCTTAATGAACCGCCGTTTAAAC 957 consensus_6451#1 ------------------------------------------------------------ consensus_6451#0 TCCAGCCCGCAGCCCTTCGACAGCCGAAAGTCGCACAGGATCTTACCATCCATCTCGACG 1017 consensus_6451#1 ------------------------------------------------------------ consensus_6451#0 ATGTTCGCCTTAAAGATCAGCTGCAGCTTCCGCCGATCGATCGTCGATATCGTAATCACG 1077 consensus_6451#1 ------------------------------------------------------------ consensus_6451#0 CCCTCGTCGTTCGATTTCCAGCCGTAGCCAAGCTTTTCCAGCACGGCCGATAACCGTTTC 1137 consensus_6451#1 ------------------------------------------------------------ consensus_6451#0 AGCGTTTCGTCGCAGCGCGCCGACACGAAGAAGCGGGTCATGCGCCGGACCAGGCGTTGG 1197 consensus_6451#1 ------------------------------------------------------------ consensus_6451#0 AACGGATTCTGCTGCTGCTGCTGCGTGCCAACGCTCTGCGTCGGGGTTGAGCTGCGTGCA 1257 consensus_6451#1 ------------------------------------------------------------ consensus_6451#0 GAGGATCAGATCGTCCAGCATGGTTGGCTGCGAGAAGCAGAACCCGTTCCGGGCCTCGAT 1317 consensus_6451#1 ------------------------------------------------------------ consensus_6451#0 CGCTTCCTCCACACCGTTCATCTCGGTGTGCACGGTCATTGGGACGGGTTGCGA 1371 consensus_6451#1 ------------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||