Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 6451 cluster # 6451       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6451#0 length = 1371 sequences # 4  
consensus_6451#1 length = 701 sequences # 1  

consensusID : consensus_6451#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1371
fasta sequence
                              [CATCCATCCTCTGCCACAGGTCCTCTTCTCATGGTGATTGCTCAACACTCTTCCCACTATCAATAAATGCAGCTGTCTGTCTTCTGTCGTTCTAACGTGTTTTGTTGTGCTCTTTTGCTTACAGTAAAAGGTGCTGTCACGAGGATTTTAAAGTACATCATACATATTGTCGTATAGAAAAAAACATGTGTCGTGTATTTTAACGCAACACAACCGTGCCACCCGCGCCACAAACTCTGTTGCTTAACTAAGCGCGTTGTGTGTCGCGTCTTATATTCTGTGTACAAAACTTGGAAGGAAGCTCTAGGAGATGTAAAGTTTACACAGTTTCTTCTTCGCGTGCATTTCCGATGCGGATAGTGTAGTGAAGGAATTGTAAAAAAGGCGCGCTACACACGCTGGTGGCTCTCACCAAAAACGTATTAAATGATCCATCTGCACTCTCACTCTCTTGGTTAGCCAGCCAAAAAAAAACAATGATTCTCTCTCAATAATGTCGTCATCCGTTTCCGGA-GTTGTCTTCCCTTTATAAACCGGTACACAACTTTGTTTGGCACTAGAAAGAGGACGTTATAATATTCGTGCGCTCACAGAGCGTTACAGAGTCAGTGTTTCGAACACATTCATTCCTATTTACCCCCCAACTCTCCCAACGACGCCACATCTACATCTTCGTTTCGTGCGATATTCTTTCGCAGCTATAATACAACACTTTAAAACAACCACCCCCTCTTCCCCTCTGTCCCCTTCTGACCTTCTGAATCCTTCGTATGAATCCTGAATGAGCGCGTTTGTGTCTGTGCTTTATCCATACACAAAACAAACAAACAATTCCTCTCCCCTCCCCCTCCTCCTT-AAGGCACAGAGTTGGTCGCGATCGCGATCGGCCAGGTGACCGGGCCCTTCATCACGATATCGGCCAGGCTTTGCTTAATCTTAATGAACCGCCGTTTAAACTCCAGCCCGCAGCCCTTCGACAGCCGAAAGTCGCACAGGATCTTACCATCCATCTCGACGATGTTCGCCTTAAAGATCAGCTGCAGCTTCCGCCGATCGATCGTCGATATCGTAATCACGCCCTCGTCGTTCGATTTCCAGCCGTAGCCAAGCTTTTCCAGCACGGCCGATAACCGTTTCAGCGTTTCGTCGCAGCGCGCCGACACGAAGAAGCGGGTCATGCGCCGGACCAGGCGTTGGAACGGATTCTGCTGCTGCTGCTGCGTGCCAACGCTCTGCGTCGGGGTTGAGCTGCGTGCAGAGGATCAGATCGTCCAGCATGGTTGGCTGCGAGAAGCAGAACCCGTTCCGGGCCTCGATCGCTTCCTCCACACCGTTCATCTCGGTGTGCACGGTCATTGGGACGGGTTGCGA]

[-] EMBL BX620952             [CATCCATCCTCTGCCACAGGTCCTCTTCTCATGGTGATTGCTCAACACTCTTCCCACTATCAATAAATGCAGCTGTCTGTCTTCTGTCGTTCTAACGTGTTTTGTTGTGCTCTTTTGCTTACAGTAAAAGGTGCTGTCACGAGGATTTTAAAGTACATCATACATATTGTCGTATAGAAAAAAACATGTGTCGTGTATTTTAACGCAACACAACCGTGCCACCCGCGCCACAAACTCTGTTGCTTAACTAAGCGCGTTGTGTGTCGCGTCTTATATTCTGTGTACAAAACTTGGAAGGAAGCTCTAGGAGATGTAAAGTTTACACAGTTTCTTCTTCGCGTGCATTTCCGATGCGGATAGTGTAGTGAAGGAATTGTAAAAAAGGCGCGCTACACACGCTGGTGGCTCTCACCAAAAACGTATTAAATGATCCATCTGCACTCTCACTCTCTTGGTTAGCCAGCCAAAAAAAAACAATGATTCTCTCTCAATAATGTCGTCATCCGTTTCCGGATGTTGTCTTCCCTTTATAAACCGGTACACAATTTTGTTTGGCACTAGAAAGAGGACGTTATAATATTCGTGCGCTCACAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CNS08W7D             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CGTTTCCGGA GTTGTCTTCCCTTTATAAACCGGTACACAACTTTGTTTGGCACTAGAAAGAGGACGTTATAATATTCGTGCGCTCACAGAGCGTTACAGAGTCAGTGTTTCGAACACATTCATTCCTATTTACCCCCCAACTCTCCCAACGACGCCACATCTACATCTTCGTTTCGTGCGATATTCTTTCGCAGCTATAATACAACACTTTAAAACAACCACCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CNS08UQI             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TTTCCGGA GTTGTCTTCCCTTTATAAACCGGTACACAACTTTGTTTGGCACTAGAAAGAGGACGTTATAATATTCGTGCGCTCACAGAGCGTTACAGAGTCAGTGTTTCGAACACATTCATTCCTATTTACCCCCCAACTCTCCCAACGACGCCACAACTACATCTTCGTTTCGTGCGATATTCTTTCGCAGCTATAATACAACACTTTAAAACAACTATCCCCTCTTCCCCTCTGTCCCCTTCTGACCTTCTGAATCCTTCGTATGAATCCTGAATGAGCGCGTTTGTGTCTGTGCTTTATCCATACACAAAACAAACAAACAATTCCTCTCCCCTCCCCCTCCTCCTT AAGGCACAGAGTTGGTCGCGATCGCGATCGGCCAGGTGACCGGGCCCTTCATCACGATATCGGCCAGGCTTTGCTTAATCTTAATGAACCGCCGTTTAAACTCCAGCCCGCAGCCCTTCGACAGCCGAAAGTCGCACAGGATCTTACCATCCATCTCGACGATGTTCGCCTTAAAGATCAGCTGCAGCTTCCGCCGATCGATCGTCGATATCGTAATCACGCCCTCGTCGTTCGATTTCCAGCCGTAGCCAAGCTTTTCCAGCACGGCCGATAACCGTTTCAGCGTTTCGTCGCAGCGCGCCGACACGAAGAAGCGGGTCATGCGCCGGACCAGGCGTTGGAACGGATTCTGCTGCTGCTGCTGCGTGCCAACGCTCTGCGTCGGGGTTGAGCTGCGTGCAGAGGATCAGATCGTCCAGCATGGTTGGCTGCGAGAAGCAGAACCCGTTCCGGGCCTCGATCGCTTCCTCCACACCGTTCATCTCGGTGTGCACGGTCATTGGGACGGGTTGCGA]
[-] EMBL BM598128             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CGTTTGTGTCTGTGTTTTATCCACACACAA   GAACAAATAATTCGTCTCCCCTCCCCCTCCTCCTTAAAGGCACAGAGTTGGTCGCGATCGCGATCGGCCAGGTGACCGGGCCCTTCATCACGATATCGGCCAGGCTTTGCTTAATCTTAATGAACCGCCGTTTAAACTCCAGCCCGCAGCCCTTCGACAGCCGAAAGTCGCACAGGATCTTACCATCCATCTCGACGATGTTCGCCTTAAAGATCAGCTGCAGCTTCCGCCGATCGATCGTCGATATCGTAATCACGCCCTCGTCGTTCGATTTCCAGCCGTAGCCAAGCTTTTCCAGCACGGCCGATAACCGTTTCAGCGTTTCGTCGCAGCGCGTCGACACGAAGAAGCGGGTCATGCGCCGGACCAGGCGTTGGAACGGATTCTGCTGCTGCTGCTGCGTGCCAACGCTCTGCGTC GGGTTGAGCTGCGTGCAGAGGATCAGATCGTCCAGCATGGTTGGCTGCGAGAAGCcgg                                                                         ]


>consensus_6451#0 CATCCATCCTCTGCCACAGGTCCTCTTCTCATGGTGATTGCTCAACACTCTTCCCACTAT CAATAAATGCAGCTGTCTGTCTTCTGTCGTTCTAACGTGTTTTGTTGTGCTCTTTTGCTT ACAGTAAAAGGTGCTGTCACGAGGATTTTAAAGTACATCATACATATTGTCGTATAGAAA AAAACATGTGTCGTGTATTTTAACGCAACACAACCGTGCCACCCGCGCCACAAACTCTGT TGCTTAACTAAGCGCGTTGTGTGTCGCGTCTTATATTCTGTGTACAAAACTTGGAAGGAA GCTCTAGGAGATGTAAAGTTTACACAGTTTCTTCTTCGCGTGCATTTCCGATGCGGATAG TGTAGTGAAGGAATTGTAAAAAAGGCGCGCTACACACGCTGGTGGCTCTCACCAAAAACG TATTAAATGATCCATCTGCACTCTCACTCTCTTGGTTAGCCAGCCAAAAAAAAACAATGA TTCTCTCTCAATAATGTCGTCATCCGTTTCCGGAGTTGTCTTCCCTTTATAAACCGGTAC ACAACTTTGTTTGGCACTAGAAAGAGGACGTTATAATATTCGTGCGCTCACAGAGCGTTA CAGAGTCAGTGTTTCGAACACATTCATTCCTATTTACCCCCCAACTCTCCCAACGACGCC ACATCTACATCTTCGTTTCGTGCGATATTCTTTCGCAGCTATAATACAACACTTTAAAAC AACCACCCCCTCTTCCCCTCTGTCCCCTTCTGACCTTCTGAATCCTTCGTATGAATCCTG AATGAGCGCGTTTGTGTCTGTGCTTTATCCATACACAAAACAAACAAACAATTCCTCTCC CCTCCCCCTCCTCCTTAAGGCACAGAGTTGGTCGCGATCGCGATCGGCCAGGTGACCGGG CCCTTCATCACGATATCGGCCAGGCTTTGCTTAATCTTAATGAACCGCCGTTTAAACTCC AGCCCGCAGCCCTTCGACAGCCGAAAGTCGCACAGGATCTTACCATCCATCTCGACGATG TTCGCCTTAAAGATCAGCTGCAGCTTCCGCCGATCGATCGTCGATATCGTAATCACGCCC TCGTCGTTCGATTTCCAGCCGTAGCCAAGCTTTTCCAGCACGGCCGATAACCGTTTCAGC GTTTCGTCGCAGCGCGCCGACACGAAGAAGCGGGTCATGCGCCGGACCAGGCGTTGGAAC GGATTCTGCTGCTGCTGCTGCGTGCCAACGCTCTGCGTCGGGGTTGAGCTGCGTGCAGAG GATCAGATCGTCCAGCATGGTTGGCTGCGAGAAGCAGAACCCGTTCCGGGCCTCGATCGC TTCCTCCACACCGTTCATCTCGGTGTGCACGGTCATTGGGACGGGTTGCGA



consensusID : consensus_6451#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 701
fasta sequence
                              [GGTCCTCTCATGGTGATTGCTCAACACTCTTCCCACTATCAATAAATGCAGCTGTCTGTCTTCTGTCGTTCTAACGTGTTTTGTTGTGCTCTTTTGCTTACAGTAAAAGGTGCTGTCACGAGGATTTTAAAGTACATCATACATATTGTCGTATAGAAAAAAACATGTGTCGTGTATTTTAACGCAACACAACCGTGCCACCCTCGCCACAAACTCTGTTGCTTAACTAAGCCGCGTTGTGTGTCGCGTCTTATATTCTGTGTACAAAAATTGGAAGGAAGCTCTAGGAGATGTAAAGTTTACACAGTTTCTTCTTCGCGTGCATTTCGATGCGGATAGTGTAGTGAAGGAATTGTAAAAAAGGCGCGCTACACACGCTGGTGGCTCTCACCAAAAACGTATTAAATGATCCATCTGCACTCTCACTCTCTGTGTTAGCCAGCCAAAAAAAACAATGATTCTCAATAATGTCGGTCATCCGTTTCCGGATGTTGTCTTCCCTTTATAAACCGGTACACAACTTTGTTTGGCACTAGAAAGAGGACGTTATAATATTCGTGCGCTCACAGAGCGTATCAGAGTCAGTGTTTCGAACACATTCATTCCTATTTACCCATCAACTCTCCCAACCACACCACATCTACATCTTCGTTTCGTGTGATATTCTTTCGCAGCTATAATACAACCGGACGCGTGGGCGG]

[-] EMBL BM605223             [GGTCCTCTCATGGTGATTGCTCAACACTCTTCCCACTATCAATAAATGCAGCTGTCTGTCTTCTGTCGTTCTAACGTGTTTTGTTGTGCTCTTTTGCTTACAGTAAAAGGTGCTGTCACGAGGATTTTAAAGTACATCATACATATTGTCGTATAGAAAAAAACATGTGTCGTGTATTTTAACGCAACACAACCGTGCCACCCTCGCCACAAACTCTGTTGCTTAACTAAGCCGCGTTGTGTGTCGCGTCTTATATTCTGTGTACAAAAATTGGAAGGAAGCTCTAGGAGATGTAAAGTTTACACAGTTTCTTCTTCGCGTGCATTTCGATGCGGATAGTGTAGTGAAGGAATTGTAAAAAAGGCGCGCTACACACGCTGGTGGCTCTCACCAAAAACGTATTAAATGATCCATCTGCACTCTCACTCTCTGTGTTAGCCAGCCAAAAAAAACAATGATTCTCAATAATGTCGGTCATCCGTTTCCGGATGTTGTCTTCCCTTTATAAACCGGTACACAACTTTGTTTGGCACTAGAAAGAGGACGTTATAATATTCGTGCGCTCACAGAGCGTATCAGAGTCAGTGTTTCGAACACATTCATTCCTATTTACCCATCAACTCTCCCAACCACACCACATCTACATCTTCGTTTCGTGTGATATTCTTTCGCAGCTATAATACAACCGGACGCGTGGGCGG]


>consensus_6451#1 GGTCCTCTCATGGTGATTGCTCAACACTCTTCCCACTATCAATAAATGCAGCTGTCTGTC TTCTGTCGTTCTAACGTGTTTTGTTGTGCTCTTTTGCTTACAGTAAAAGGTGCTGTCACG AGGATTTTAAAGTACATCATACATATTGTCGTATAGAAAAAAACATGTGTCGTGTATTTT AACGCAACACAACCGTGCCACCCTCGCCACAAACTCTGTTGCTTAACTAAGCCGCGTTGT GTGTCGCGTCTTATATTCTGTGTACAAAAATTGGAAGGAAGCTCTAGGAGATGTAAAGTT TACACAGTTTCTTCTTCGCGTGCATTTCGATGCGGATAGTGTAGTGAAGGAATTGTAAAA AAGGCGCGCTACACACGCTGGTGGCTCTCACCAAAAACGTATTAAATGATCCATCTGCAC TCTCACTCTCTGTGTTAGCCAGCCAAAAAAAACAATGATTCTCAATAATGTCGGTCATCC GTTTCCGGATGTTGTCTTCCCTTTATAAACCGGTACACAACTTTGTTTGGCACTAGAAAG AGGACGTTATAATATTCGTGCGCTCACAGAGCGTATCAGAGTCAGTGTTTCGAACACATT CATTCCTATTTACCCATCAACTCTCCCAACCACACCACATCTACATCTTCGTTTCGTGTG ATATTCTTTCGCAGCTATAATACAACCGGACGCGTGGGCGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6451#0      CATCCATCCTCTGCCACAGGTCCTCTTCTCATGGTGATTGCTCAACACTCTTCCCACTAT 60
consensus_6451#1      ---------------------GGTCCTCTCATGGTGATTGCTCAACACTCTTCCCACTAT 39
                                             ** **********************************

consensus_6451#0      CAATAAATGCAGCTGTCTGTCTTCTGTCGTTCTAACGTGTTTTGTTGTGCTCTTTTGCTT 120
consensus_6451#1      CAATAAATGCAGCTGTCTGTCTTCTGTCGTTCTAACGTGTTTTGTTGTGCTCTTTTGCTT 99
                      ************************************************************

consensus_6451#0      ACAGTAAAAGGTGCTGTCACGAGGATTTTAAAGTACATCATACATATTGTCGTATAGAAA 180
consensus_6451#1      ACAGTAAAAGGTGCTGTCACGAGGATTTTAAAGTACATCATACATATTGTCGTATAGAAA 159
                      ************************************************************

consensus_6451#0      AAAACATGTGTCGTGTATTTTAACGCAACACAACCGTGCCACCCGCGCCACAAACTCTGT 240
consensus_6451#1      AAAACATGTGTCGTGTATTTTAACGCAACACAACCGTGCCACCCTCGCCACAAACTCTGT 219
                      ******************************************** ***************

consensus_6451#0      TGCTTAACTAAGC-GCGTTGTGTGTCGCGTCTTATATTCTGTGTACAAAACTTGGAAGGA 299
consensus_6451#1      TGCTTAACTAAGCCGCGTTGTGTGTCGCGTCTTATATTCTGTGTACAAAAATTGGAAGGA 279
                      ************* ************************************ *********

consensus_6451#0      AGCTCTAGGAGATGTAAAGTTTACACAGTTTCTTCTTCGCGTGCATTTCCGATGCGGATA 359
consensus_6451#1      AGCTCTAGGAGATGTAAAGTTTACACAGTTTCTTCTTCGCGTGCATTTC-GATGCGGATA 338
                      ************************************************* **********

consensus_6451#0      GTGTAGTGAAGGAATTGTAAAAAAGGCGCGCTACACACGCTGGTGGCTCTCACCAAAAAC 419
consensus_6451#1      GTGTAGTGAAGGAATTGTAAAAAAGGCGCGCTACACACGCTGGTGGCTCTCACCAAAAAC 398
                      ************************************************************

consensus_6451#0      GTATTAAATGATCCATCTGCACTCTCACTCTCTTGGTTAGCCAGCCAAAAAAAAACAATG 479
consensus_6451#1      GTATTAAATGATCCATCTGCACTCTCACTCTCTGTGTTAGCCAGCCAAAAAAAA-CAATG 457
                      *********************************  ******************* *****

consensus_6451#0      ATTCTCTCTCAATAATGTCG-TCATCCGTTTCCGGA-GTTGTCTTCCCTTTATAAACCGG 537
consensus_6451#1      ATTCTC----AATAATGTCGGTCATCCGTTTCCGGATGTTGTCTTCCCTTTATAAACCGG 513
                      ******    ********** *************** ***********************

consensus_6451#0      TACACAACTTTGTTTGGCACTAGAAAGAGGACGTTATAATATTCGTGCGCTCACAGAGCG 597
consensus_6451#1      TACACAACTTTGTTTGGCACTAGAAAGAGGACGTTATAATATTCGTGCGCTCACAGAGCG 573
                      ************************************************************

consensus_6451#0      TTACAGAGTCAGTGTTTCGAACACATTCATTCCTATTTACCCCCCAACTCTCCCAACGAC 657
consensus_6451#1      TATCAGAGTCAGTGTTTCGAACACATTCATTCCTATTTACCCATCAACTCTCCCAACCAC 633
                      *  ***************************************  ************* **

consensus_6451#0      GCCACATCTACATCTTCGTTTCGTGCGATATTCTTTCGCAGCTATAATACAACACTTTAA 717
consensus_6451#1      ACCACATCTACATCTTCGTTTCGTGTGATATTCTTTCGCAGCTATAATACAACCGGACGC 693
                       ************************ ***************************       

consensus_6451#0      AACAACCACCCCCTCTTCCCCTCTGTCCCCTTCTGACCTTCTGAATCCTTCGTATGAATC 777
consensus_6451#1      GTGGGCGG---------------------------------------------------- 701
                           *                                                      

consensus_6451#0      CTGAATGAGCGCGTTTGTGTCTGTGCTTTATCCATACACAAAACAAACAAACAATTCCTC 837
consensus_6451#1      ------------------------------------------------------------
                                                                                  

consensus_6451#0      TCCCCTCCCCCTCCTCCTTAAGGCACAGAGTTGGTCGCGATCGCGATCGGCCAGGTGACC 897
consensus_6451#1      ------------------------------------------------------------
                                                                                  

consensus_6451#0      GGGCCCTTCATCACGATATCGGCCAGGCTTTGCTTAATCTTAATGAACCGCCGTTTAAAC 957
consensus_6451#1      ------------------------------------------------------------
                                                                                  

consensus_6451#0      TCCAGCCCGCAGCCCTTCGACAGCCGAAAGTCGCACAGGATCTTACCATCCATCTCGACG 1017
consensus_6451#1      ------------------------------------------------------------
                                                                                  

consensus_6451#0      ATGTTCGCCTTAAAGATCAGCTGCAGCTTCCGCCGATCGATCGTCGATATCGTAATCACG 1077
consensus_6451#1      ------------------------------------------------------------
                                                                                  

consensus_6451#0      CCCTCGTCGTTCGATTTCCAGCCGTAGCCAAGCTTTTCCAGCACGGCCGATAACCGTTTC 1137
consensus_6451#1      ------------------------------------------------------------
                                                                                  

consensus_6451#0      AGCGTTTCGTCGCAGCGCGCCGACACGAAGAAGCGGGTCATGCGCCGGACCAGGCGTTGG 1197
consensus_6451#1      ------------------------------------------------------------
                                                                                  

consensus_6451#0      AACGGATTCTGCTGCTGCTGCTGCGTGCCAACGCTCTGCGTCGGGGTTGAGCTGCGTGCA 1257
consensus_6451#1      ------------------------------------------------------------
                                                                                  

consensus_6451#0      GAGGATCAGATCGTCCAGCATGGTTGGCTGCGAGAAGCAGAACCCGTTCCGGGCCTCGAT 1317
consensus_6451#1      ------------------------------------------------------------
                                                                                  

consensus_6451#0      CGCTTCCTCCACACCGTTCATCTCGGTGTGCACGGTCATTGGGACGGGTTGCGA 1371
consensus_6451#1      ------------------------------------------------------
                                                                            




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)