These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6453#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 779 fasta sequence [ATCAGTAGTAGTGTGATTTATTAGCGCAAAAAAGGGGGATGTAAGACCGTGCGTACCATGCGGCAGGGGGTTTTTGTGGTATTTTGTGTTAATTTTTGTCCCCCTTTCCTTAACACCCCCCGTTGGTGTGCACGTAGATGATTTCTCTATTAATTCCGCTTTATTTCGCGTTTACGATAGTTAATGCTCGCGTTTTGTTGCTCTCCACGTACGTCCACTACTTTACATTACAGTTCGCGAATGTAAGTGAATGCTTTATGTGTGCTATGGTGACTCCGGATCGAATTGTCCGTATGAATTGTGTCCCTTTGGGAGGATTGTTTTGTTTGATTTTAGTTGAAGAAATCGGCGCGCTTGTTTCTTTTGCAAATCGTTTGCTTACTCTGCTTTTACTCTGTGTCGTGGACGCTCTGTGCTGTTTTGCTGTACGTTTTTGCTTGACCTTCGTCCACAGGCGTGCAGTGTTAGCTTAATTGAACAACATCAGCTTGTGTAGGTTCTACTGTAGTATGCTGCTTTTACTGAGTTTTGTTTTGTTTTTTTTTAAATGCACATTAATACGATTGCTCTAATTGTTACTCCTCGGGCAGCTGCTTCATGCGGGTGTGTGCGTGTGTATATTGGGTCCCTCGTTCGTAATATCGCTGACAGGTTTTAAAGCGTTAGAGCAGCTTCAAAGTCTCTATTTGTCTAAACACTTACTAACACGAGCCTGTCGTATCATTCCTGTCCTGAAGCTTTACATCGTAACGCGGGAGGAANAGATCAAGCTTAGCGTT] [+] EMBL BX623032 [ATCAGTAGTAGTGTGATTTATTAGCGCAAAAAAGGGGGATGTAAGACCGTGCGTACCATGCGGCAGGGGGTTTTTGTGGTATTTTGTGTTAATTTTTGTCCCCCTTTCCTTAACACCCCCCGTTGGTGTGCACGTAGATGATTTCTCTATTAATTCCGCTTTATTTCGCGTTTACGATAGTTAATGCTCGCGTTTTGTTGCTCTCCACGTACGTCCACTACTTTACATTACAGTTCGCGAATGTAAGTGAATGCTTTATGTGTGCTATGGTGACTCCGGATCGAATTGTCCGTATGAATTGTGTCCCTTTGGGAGGATTGTTTTGTTTGATTTTAGTTGAAGAAATCGGCGCGCTTGTTTCTTTTGCAAATCGTTTGCTTACTCTGCTTTTACTCTGTGTCGTGGACGCTCTGTGCTGTTTTGCTGTACGTTTTTGCTTGACCTTCGTCCACAGGCGTGCAGTGTTAGCTTAATTGAACAACATCAGCTTGTGTAGGTTCTACTGTAGTATGCTGCTTTTACTGAGTTTTGTTTTGTTTTTTTTTAAATGCACATTAATACGATTGCTCTAATTGTTACTCCTCGGGCAGCTGCTTCATGCGGGTGTGTGCGTGTGTATATTGGGTCCCTCGTTCGTAATATCGCTGACAGGTTTTAAAGCGTTAGAGCAGCTTCAAAGTCTCTATTTGTCTAAACACTTACTAACACGAGCCTGTCGTATCATTCCTGTCCTGAAGCTTTACATCGTAACGCGGGAGGAANAGATCAAGCTTAGCGTT] [-] EMBL AGA280607 [ GTAGATGATTTCTCTATTAATCCCGCTTTATTTCGCGTTTACGATAGTTAATGCTCGCGTTTTGTTGCTCTCCACGTACGTCCACTACTTTACATTACAGTTCGCGAATGTAAGTGAATGCTTTATGTGTGCTATGGTGACTCCGGATCGAATTGTCCGTATGAATTGTGTCCCTTTGGGAGGATTGTTTTGTTTGATTTTAGTTGAAGAAATCGGCGCGCTTGTTTCTTTTGCAAATCGTTTGCTTACTCTGCTTTTACTCTGTGTCGTGGACGCTCTGTGCTGTTTTGCTGTACGTTTTTGCTTGACCTTCGTCCACAGGCGTGCAGTGTTAGCTTAATTGAACAACATCAGCTTGTGTAGGTTCTACTGTAGTATGCTGCTTTTACTGAGTTTTGTTTTGTTTTTTTTTAAATGCACATTAATACGATTGCTCTAATTGTTACTCCTCGGGCAGGTGCTTCATGCGGGTGTGTGCGTGTGTATAATGGGTCCCTCGTTCGT ] consensusID : consensus_6453#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 727 fasta sequence [GTGTGCACGTAGATGATTTCTCTATTAATTCCGCTTTATTTCGCGTTTACGATAGTTAATGCTCGCGTTTTGTTGCTCTCCACGTACGTCCACTACTTTACATTACAGTTCGCGAATGTAAGTGAATGCTTTATGTGTGCTATGGTGACTTCGGATCGCAGTTCAATAGTAGCTTGAAGTTCACAGTACTACTCCGTGTATGAGATGTCCCCCTTTGGGAGGATTGTTTTGTTTGATTTTAGTTGAAGAAATCGGCGCGCTTGTTTCTTTTGCAAATCGTTTGCTTACTCTGCTTTTACCCTGTGCCGTGGACGCTCTGTGCTGTTTTGCTGTACGTTTTTGCTTGACCTTCGTCCACAGGCGTGCAGTGTTAGCTTAATTGAACAACATCAGCTTGTGTAGGTTCTACTGTAGTATGCTGCTTTTACTGAGTTTTGTTTTTTTTTTTTAAATGCACATTAATACGATTGCTCTAATTGTTACTCCTCGGGCAGCTGCTTCATGCGGGTGTGTGCGTGTGTATTTTGGGTCCCTCGTTCGTAATATCGCTGACAGGTTTTAAAGCGTTAGAGCAGCTTCAAAGTATCTATTTGTCTAAACACTTACTAACACGAGCCTGTCGTATCATTCCTGTCCTGAAGCTTTACATCGTAACGCGGGANGAAGAGAACAAGCTTTGCGTTAACGAGAGAACGATCGGTTAAAGAGAGCGATACAAGGAGCATAG] [+] EMBL BX621496 [GTGTGCACGTAGATGATTTCTCTATTAATTCCGCTTTATTTCGCGTTTACGATAGTTAATGCTCGCGTTTTGTTGCTCTCCACGTACGTCCACTACTTTACATTACAGTTCGCGAATGTAAGTGAATGCTTTATGTGTGCTATGGTGACTTCGGATCGCAGTTCAATAGTAGCTTGAAGTTCACAGTACTACTCCGTGTATGAGATGTCCCCCTTTGGGAGGATTGTTTTGTTTGATTTTAGTTGAAGAAATCGGCGCGCTTGTTTCTTTTGCAAATCGTTTGCTTACTCTGCTTTTACCCTGTGCCGTGGACGCTCTGTGCTGTTTTGCTGTACGTTTTTGCTTGACCTTCGTCCACAGGCGTGCAGTGTTAGCTTAATTGAACAACATCAGCTTGTGTAGGTTCTACTGTAGTATGCTGCTTTTACTGAGTTTTGTTTTTTTTTTTTAAATGCACATTAATACGATTGCTCTAATTGTTACTCCTCGGGCAGCTGCTTCATGCGGGTGTGTGCGTGTGTATTTTGGGTCCCTCGTTCGTAATATCGCTGACAGGTTTTAAAGCGTTAGAGCAGCTTCAAAGTATCTATTTGTCTAAACACTTACTAACACGAGCCTGTCGTATCATTCCTGTCCTGAAGCTTTACATCGTAACGCGGGANGAAGAGAACAAGCTTTGCGTTAACGAGAGAACGATCGGTTAAAGAGAGCGATACAAGGAGCATAG] consensusID : consensus_6453#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 669 fasta sequence [TTAGCTCGAGCAGAATCGCCNGAGGTGTACTTTGGGAGGATTGTTTGTTTGAATTTTAGTTGAAGAAATCGGCGCGCTTGTTTCTTTTGCAAATCGTTTGCTTACTCTGCTTTTACTCTGTGTCGTGGACGCTCTGGTGCTGTTTTGCTGTACGTTTTTGCTTGACCTTCGTCCACAGGCGTGCCAGTGTTAGCTTAATTGAACCAAATCAGTTGTGTAGGTTCTACTGTAGTATGCTGCTTTTACCTGAAGTTCATCCCGGAACCGGACCACACTGTTAAAATTGCCCATTAATACCGATTGCGTCTAATTGTTACTCCTCNGGGGCAAGAGTTGCTTTCATGCGGGGTGTAGTGCGGTGTGTATATTGGGGTANCCCTTCGGTTTCCGGTAAATATTCCGTTGAACCAGGGTTTCTTCGAAAAGGCGGTTTCACGGAGCAGCTTTCCACAAAGGTCTTCTTATTATGGGTCCTTAACACAACTTTACTTAAACAAACGGAAGGCCCTGTCGATAATCCAATTTCCCTTGGTACCCTTGGANAAGGCTTATTAAACATTCCGGTTAAAACCGACGGGCGAAGCGCAAAGGCAAGAATCAAAAGCCTTTAGGCAGTTTAAACGGGAGAAGGAAACGTTAATGCCGGGGTTTAAAACACGACAGCAAGCC] [+] EMBL AL696771 [TTAGCTCGAGCAGAATCGCCNGAGGTGTACTTTGGGAGGATTGTTTGTTTGAATTTTAGTTGAAGAAATCGGCGCGCTTGTTTCTTTTGCAAATCGTTTGCTTACTCTGCTTTTACTCTGTGTCGTGGACGCTCTGGTGCTGTTTTGCTGTACGTTTTTGCTTGACCTTCGTCCACAGGCGTGCCAGTGTTAGCTTAATTGAACCAAATCAGTTGTGTAGGTTCTACTGTAGTATGCTGCTTTTACCTGAAGTTCATCCCGGAACCGGACCACACTGTTAAAATTGCCCATTAATACCGATTGCGTCTAATTGTTACTCCTCNGGGGCAAGAGTTGCTTTCATGCGGGGTGTAGTGCGGTGTGTATATTGGGGTANCCCTTCGGTTTCCGGTAAATATTCCGTTGAACCAGGGTTTCTTCGAAAAGGCGGTTTCACGGAGCAGCTTTCCACAAAGGTCTTCTTATTATGGGTCCTTAACACAACTTTACTTAAACAAACGGAAGGCCCTGTCGATAATCCAATTTCCCTTGGTACCCTTGGANAAGGCTTATTAAACATTCCGGTTAAAACCGACGGGCGAAGCGCAAAGGCAAGAATCAAAAGCCTTTAGGCAGTTTAAACGGGAGAAGGAAACGTTAATGCCGGGGTTTAAAACACGACAGCAAGCC] consensusID : consensus_6453#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 482 fasta sequence [CCCGAGGTTTAGTCACTACTTTACATTACAGTTCGCGAATGTATTTGAATGCTTTATGTGTGCTATGGTGACTCCGGATCGAATTGTCCGTATGAATTGTGTCCCTTTGGGAGCGATAGNAAGTGTTCGATATAGTGGATCCAAATCGGAGCNCTGTGTTGCTTGATGCAAATCGATATGACATTATCCGCTTGTTACTCTGGTGTCTNTGGACGCTCTGCNGTGTTTAGCTGTNNCGTTGTGTAGCTTGACCTTCGTCCGACAGGCGTGCAGGTGTGAGCTTAATTGAACAACGATCAGCTTGTGTATGAGTTCTACTGTATGTATGCTGCTTTTACTGAGTTTGTATTGCGNCTTTTTCTTAAATGCAGCATTAATACGATTGCTCTAATTGTTACTCCTCGGGCAGCTGCTTCATGCGCGGTGTGTGCGTGTGTATATTGGGTCCCTCGTTCGTAATATCGCTGACAGGTTTTAAAGCG] [+] EMBL AL692449 [CCCGAGGTTTAGTCACTACTTTACATTACAGTTCGCGAATGTATTTGAATGCTTTATGTGTGCTATGGTGACTCCGGATCGAATTGTCCGTATGAATTGTGTCCCTTTGGGAGCGATAGNAAGTGTTCGATATAGTGGATCCAAATCGGAGCNCTGTGTTGCTTGATGCAAATCGATATGACATTATCCGCTTGTTACTCTGGTGTCTNTGGACGCTCTGCNGTGTTTAGCTGTNNCGTTGTGTAGCTTGACCTTCGTCCGACAGGCGTGCAGGTGTGAGCTTAATTGAACAACGATCAGCTTGTGTATGAGTTCTACTGTATGTATGCTGCTTTTACTGAGTTTGTATTGCGNCTTTTTCTTAAATGCAGCATTAATACGATTGCTCTAATTGTTACTCCTCGGGCAGCTGCTTCATGCGCGGTGTGTGCGTGTGTATATTGGGTCCCTCGTTCGTAATATCGCTGACAGGTTTTAAAGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6453#0 ATCAGTAGTAGTGTGATTTATTAGCGCAAAAAAGGGGGATGTAAGACCGTGCGTACCATG 60 consensus_6453#1 ------------------------------------------------------------ consensus_6453#3 ------------------------------------------------------------ consensus_6453#2 ------------------------------------------------------------ consensus_6453#0 CGGCAGGGGGTTTTTGTGGTATTTTGTGTTAATTTTTGTCCCCCTTTCCTTAACACCCCC 120 consensus_6453#1 ------------------------------------------------------------ consensus_6453#3 ------------------------------------------------------------ consensus_6453#2 ------------------------------------------------------------ consensus_6453#0 CGTTGGTGTGCACGTAGATGATTTCTCTATTAATTCCGCTTTATTTCGCGTTTACGATAG 180 consensus_6453#1 -----GTGTGCACGTAGATGATTTCTCTATTAATTCCGCTTTATTTCGCGTTTACGATAG 55 consensus_6453#3 ------------------------------------------------------------ consensus_6453#2 ------------------------------------------------------------ consensus_6453#0 TTAATGCTCGCGTTTTGTTGCTCTCCACGTACGTCCACTACTTTACATTACAGTTCGCGA 240 consensus_6453#1 TTAATGCTCGCGTTTTGTTGCTCTCCACGTACGTCCACTACTTTACATTACAGTTCGCGA 115 consensus_6453#3 ----------------------CCCGAGGTTTAGTCACTACTTTACATTACAGTTCGCGA 38 consensus_6453#2 ------------------------------------------------------------ consensus_6453#0 ATGTAAGTGAATGCTTTATGTGTGCTATGGTGACTCCGGATCGAATT------------- 287 consensus_6453#1 ATGTAAGTGAATGCTTTATGTGTGCTATGGTGACTTCGGATCGCAGTTCAATAGTAGCTT 175 consensus_6453#3 ATGTATTTGAATGCTTTATGTGTGCTATGGTGACTCCGGATCGAATT------------- 85 consensus_6453#2 ------------------------------TTAGCTCGAGCAGAATC------------- 17 * * ** * * consensus_6453#0 ---GTCC---------------GTATGAATTGTGTCCCTTTGGGAG-GATTGTTT-TGTT 327 consensus_6453#1 GAAGTTCACAGTACTACTCCGTGTATGAGATGTCCCCCTTTGGGAG-GATTGTTT-TGTT 233 consensus_6453#3 ---GTCC---------------GTATGAATTGTGTCCCTTTGGGAGCGATAGNAAGTGTT 127 consensus_6453#2 ----------------------GCCNGAGGTGTA---CTTTGGGAG-GATTGTTTGT-TT 50 * ** *** ********* *** * * ** consensus_6453#0 TGATTTTAGTTGAAG-AAATCGGCGCGCT-TGTTTCTTT-TGCAAATCGTTT--GCTTAC 382 consensus_6453#1 TGATTTTAGTTGAAG-AAATCGGCGCGCT-TGTTTCTTT-TGCAAATCGTTT--GCTTAC 288 consensus_6453#3 CGATAT-AGTGGATCCAAATCGGAGCNCTGTGTTGCTTGATGCAAATCGATATGACATTA 186 consensus_6453#2 GAATTTTAGTTGAAG-AAATCGGCGCGCT-TGTTTCTTT-TGCAAATCGTTT--GCTTAC 105 ** * *** ** ******* ** ** **** *** ********* * * * consensus_6453#0 TCTGCTT-TTACTCTG-TGTC-GTGGACGCTCTG-TGCTGTTTTGCTGTACGTTTTTG-- 436 consensus_6453#1 TCTGCTT-TTACCCTG-TGCC-GTGGACGCTCTG-TGCTGTTTTGCTGTACGTTTTTG-- 342 consensus_6453#3 TCCGCTTGTTACTCTGGTGTCTNTGGACGCTCTG-CNGTGTTTAGCTGTNNCGTTGTGTA 245 consensus_6453#2 TCTGCTT-TTACTCTG-TGTC-GTGGACGCTCTGGTGCTGTTTTGCTGTACGTTTTTG-- 160 ** **** **** *** ** * *********** ***** ***** ** ** consensus_6453#0 -CTTGACCTTCGTCC-ACAGGCGTGCAG-TGTTAGCTTAATTGAACAAC-ATCAGCTTGT 492 consensus_6453#1 -CTTGACCTTCGTCC-ACAGGCGTGCAG-TGTTAGCTTAATTGAACAAC-ATCAGCTTGT 398 consensus_6453#3 GCTTGACCTTCGTCCGACAGGCGTGCAGGTGTGAGCTTAATTGAACAACGATCAGCTTGT 305 consensus_6453#2 -CTTGACCTTCGTCC-ACAGGCGTGCCAGTGTTAGCTTAATTGAACCAA-ATCAG-TTGT 216 ************** ********** *** ************* * ***** **** consensus_6453#0 GTA--GGTTCTACTGTA-GTATGCTGCTTTTACTGAGTTT-TGTTTTGT----------T 538 consensus_6453#1 GTA--GGTTCTACTGTA-GTATGCTGCTTTTACTGAGTTT-TGTTTT------------T 442 consensus_6453#3 GTATGAGTTCTACTGTATGTATGCTGCTTTTACTGAGTTTGTATTGCGNC---------T 356 consensus_6453#2 GTA--GGTTCTACTGTA-GTATGCTGCTTTTACCTGAAGTTCATCCCGGAACCGGACCAC 273 *** *********** *************** * * consensus_6453#0 TTTTTTTAAATGCA-CATTAATAC-GATTGC-TCTAATTGTTACTCCTCGGGC-----AG 590 consensus_6453#1 TTTTTTTAAATGCA-CATTAATAC-GATTGC-TCTAATTGTTACTCCTCGGGC-----AG 494 consensus_6453#3 TTTTCTTAAATGCAGCATTAATAC-GATTGC-TCTAATTGTTACTCCTCGGGC-----AG 409 consensus_6453#2 ACTGTTAAAATTGCCCATTAATACCGATTGCGTCTAATTGTTACTCCTCNGGGGCAAGAG 333 * * **** ********* ****** ***************** ** ** consensus_6453#0 CTGCTT-CATGCG-GGTGT-GTGCG-TGTGTATATTGGGTCCCTCGTTCGTAATATCGCT 646 consensus_6453#1 CTGCTT-CATGCG-GGTGT-GTGCG-TGTGTATTTTGGGTCCCTCGTTCGTAATATCGCT 550 consensus_6453#3 CTGCTT-CATGCGCGGTGT-GTGCG-TGTGTATATTGGGTCCCTCGTTCGTAATATCGCT 466 consensus_6453#2 TTGCTTTCATGCGGGGTGTAGTGCGGTGTGTATATTGGGGTANCCCTTCG-GTTTCCGGT 392 ***** ****** ***** ***** ******* ***** * **** * ** * consensus_6453#0 GACAGGTTTTAAAGCGTTAGAGCAGCTTCAAAGTCTCTATTTGTCTAAACACTTACTAAC 706 consensus_6453#1 GACAGGTTTTAAAGCGTTAGAGCAGCTTCAAAGTATCTATTTGTCTAAACACTTACTAAC 610 consensus_6453#3 GACAGGTTTTAAAGCG-------------------------------------------- 482 consensus_6453#2 AA-ATATTCCGTTGAACCAGGGTTTCTTCGAAAAGGCGGTTTCACGGAGCAGCTTTCCAC 451 * * ** * consensus_6453#0 ACGAGCCTGTCGTATCATT--CCTGTCCTGAAGCTTTACATCGTAACGCGGGAGGAANAG 764 consensus_6453#1 ACGAGCCTGTCGTATCATT--CCTGTCCTGAAGCTTTACATCGTAACGCGGGANGAAGAG 668 consensus_6453#3 ------------------------------------------------------------ consensus_6453#2 AAAGGTCT-TCTTATTATGGGTCCTTAACACAACTTTACTTAAACAAACGGAAGGCCCTG 510 consensus_6453#0 ATCAAGCTTAGCGTT--------------------------------------------- 779 consensus_6453#1 AACAAGCTTTGCGTTAACGAGAGAACGATCGGTTAAAGAGAGCGATACAAGGAGCATAG- 727 consensus_6453#3 ------------------------------------------------------------ consensus_6453#2 -TCGATAATCCAATTTCCCTTGGTACCCTTGGANAAGGCTTATTAAACATTCCGGTTAAA 569 consensus_6453#0 ------------------------------------------------------------ consensus_6453#1 ------------------------------------------------------------ consensus_6453#3 ------------------------------------------------------------ consensus_6453#2 ACCGACGGGCGAAGCGCAAAGGCAAGAATCAAAAGCCTTTAGGCAGTTTAAACGGGAGAA 629 consensus_6453#0 ---------------------------------------- consensus_6453#1 ---------------------------------------- consensus_6453#3 ---------------------------------------- consensus_6453#2 GGAAACGTTAATGCCGGGGTTTAAAACACGACAGCAAGCC 669 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||