cluster # 6455

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Anopheles gambiae
cluster # 6455 cluster # 6455 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6455#0 length = 1207 sequences # 4

consensus_6455#1 length = 603 sequences # 1

consensusID : consensus_6455#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1207
fasta sequence

                              [GGCGCGTGAGTGGATGTGCGTGTGTGTGTTTGTGGTGAGAAATTTCACAACAAAGTAAGAAAAGGCCGACAAAAGGTGTGCCAGCGGGAGTAGGAAAGAGGAAAGGGAGAAAAAAAGGAAATAGGATATCGTACCGGAAGGGTCCGGGCAAAACATGAGTATCCTTTAACTACGACCACATCGGCACCAGAGCAGACCAGACACGAACGAAGCATCCGGGCGGGCAAGGAAAGAACGACATCCCGCACGCGTGTCTGCCCCAAGCAAAGGCCCCCGCGATGGCCGTTTCCTTTTGTGGCAAGCGGCTGCTGCTAACGAGGACGAACCTGTTTGCGAACCCGCGACGTCACGGGTACATAGTGCTAGTGCCCGAGATCGGGGAGGATCTGCCGGAGAAAAACCCACTCTCCAGCTCGACCGGCCTGCCCGAGTTTAACAATGTGACGATCGAGAAGTGTGTCGGCGCGATCGGGCAGCAGGCGATCGCGGCGGAGAAGAGTGTGCGGGCGATCGAGGAGCGGCTGGAGCAGGCGGCGGCCGGCACCGGACCACCCGT-GACGGACGTCATCAAGGACATTATACTGCCGCTGGAGGCGACGGGCGCCCCGCTCGAGACGACCTGGGGCATCGCGAAGACGCTCTACCTCGGCAACAGTTCGCGCATGCCGACGAAAAGCTACCTGACGATCCACGAGCGGGCCCGCGGTGCCCGGCGGGCCAAGTTCAACAGCGTGCCGATCTACCGGACGCTCAAGGGGGCGCTCGCGGCGGGCCGCGCCAAGCCGGACGGCGAGCTGGGCGGCGAGGAGCGGCGGCTGCTGCAGAAGTACGTGCTGGAGGCGAAGCTGAGCGGGATCGAGGTGGACGGGTCGTCCAAGCTCGAGCTGAACGAGATACTGGAGCGGCTGGCGCAGGAGCGCTCGCGGTTCGCCGGCAAGCGGGACGTGGCGGTGAAGAAGTACCAGCAGGTGATCGAGGACCCGGCGCTGATGAAGGAGTTCCCGCCGAACCTGCTGCAGTCGCTCGCGACCGACCCGAGCCAGGCGATGAAGGGCCCGTGGCGGATCACGCTGCAGCCGGCGGTCGCGGAACGCTTCCTGGAGTACTGCGGCGACCGGACGCACCGCTGGAACCTGTGGCAGGCGGACACGCGCAAGTGCTCGATCCACACGGACAAGTCGCTGGAGAACAGCTCGCACCTCGAGTC]

[+] EMBL BM615820             [GGCGCGTGAGTGGATGTGCGTGTGTGTGTTTGTGGTGAGAAATTTCACAACAAAGTAAGAAAAGGCCGACAAAAGGTGTGCCAGCGGGAGTAGGAAAGAGGAAAGGGAGAAAAAAAGGAAATAGGATATCGTACCGGAAGGGTCCGGGCAAAACATGAGTATCCTTTAACTACGACCACATCGGCACCAGAGCAGACCAGACACGAACGAAGCATCCGGGCGGGCAAGGAAAGAACGACATCCCGCACGCGTGTCTGCCCCAAGCGAAGGCCCCCGCGATGGCCGTTTCCTTTTGTGGCAAGCGACTGCTGCTAACGAGGACGAACCTGTTTGCGAACCCGCGACGTCACGGGTACATAGTGCTAGTGCCCGAGATCGGGGAGGATCTGCCGGAGAAAAACCCACTCTCCAGCTCGACCGGCCTGCCCGAGTTTAACAATGTGACGATCGAGAAGTGTGTCGGCGCGATCGGGCAGCAGGCGATCGCGGCGGAAAAGAGTGTGCGGGCGATCGAGGAGCGGCTGGAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BM600544             [ cCGCGTGAGTGGATGTGCGTGTGTGTGTTTGTGGTGAGAAATTTCACAACAAAGTAAGAAAAGGCCGACAAAAGGTGTGCCAGCGGGAGTAGGAAAGAGGAAAGGGAGAAAAAAAGGAAATAGGATATCGTACCGGAAGGGTCCGGGCAAAACATGAGTATCCTTTAACTACGACCACATCGGCACCAGAGCAGACCAGACACGAACGAAGCATCCGGGCGGGCAAGGAAAGAACGACATCCCGCACGCGTGTCTGCCCCAAGCAAAGGCCCCCGCGATGGCCGTTTCCTTTTGTGGCAAGCGGCTGCTGCTAACGAGGACGAACCTGTTTGCGAACCCGCGACGTCACGGGTACATAGTGCTAGTGCCCGAGATCGGGGAGGATCTGCCGGAGAAAAACCCACTCTCCAGCTCGACCGGCCTGCCCGAGTTTAACAATGTGACGATCGAGAAGTGTGTCGGCGCGATCGGGCAGCAGGCGATCGCGGCGGAGAAGAGTGTGCGGGCGATCGAGGAGCGGCTGGAGCAGGCGGCGGCCGGCACCGGACCACCCGT GACGGACGTCATCAAGGACATTATACTGCCGCTGGAGGCGACGGGCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BM643351             [                                                       ccgGAAAAGGCCGACAAAAGGTGTGCCAGCGGGAGTAGGAAAGAGGAAAGGGAGAAAAAAAGGAAATAGGATATCGTACCGGAAGGGTCCGGGCAAAACATGAGTATCCTTTAACTACGACCACATCGGCACCAGAGCAGACCATACACGAACGAAGCATCCGGGCGGGCAAGGAAAGAACGACATCCCGCACGCGTGTCTGCCCCAAGCAAAGGCCCCCGCGATGGCCGTTTCCTTTTGTGGCAAGCGGCTGCTGCTAACGAGGACGAACCTGTTTGCGAACCCGCGACGTCACGGGTACATAGTGCTAGTGCCCGAGATCGGGGAGGATCTGCCGGAGAAAAACCCACTCTCCAGCTCGACCGGTCTGCCCGAGTTTAACAATGTGACGATCGAGAAGTGTGTCGGCGCGATCGGGCAGCAAGCGATCGCGGCGGAGAAGAGTGTGCGGGCGATCGAGGAGCGGCTGGAGCAGGCGGCGGCCGGCACCGGACCACCCGT GACGGACGTCATCAAGGACATTATACTGCCGCTGGAGGCGACGGGCGCCCCGCTCGAGACGACCTGGGGCATCGCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BM598941             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ccgcggACGCGTGGGCGGACGTCATCAAGGACATTATACTGCCGCTGGAGGCGACGGGCGCCCCGCTCGAGACGACCTGGGGCATCGCGAAGACGCTCTACCTCGGCAACAGTTCGCGCATGCCGACGAAAAGCTACCTGACGATCCACGAGCGGGCCCGCGGTGCCCGGCGGGCCAAGTTCAACAGCGTGCCGATCTACCGGACGCTCAAGGGGGCGCTCGCGGCGGGCCGCGCCAAGCCGGACGGCGAGCTGGGCGGCGAGGAGCGGCGGCTGCTGCAGAAGTACGTGCTGGAGGCGAAGCTGAGCGGGATCGAGGTGGACGGGTCGTCCAAGCTCGAGCTGAACGAGATACTGGAGCGGCTGGCGCAGGAGCGCTCGCGGTTCGCCGGCAAGCGGGACGTGGCGGTGAAGAAGTACCAGCAGGTGATCGAGGACCCGGCGCTGATGAAGGAGTTCCCGCCGAACCTGCTGCAGTCGCTCGCGACCGACCCGAGCCAGGCGATGAAGGGCCCGTGGCGGATCACGCTGCAGCCGGCGGTCGCGGAACGCTTCCTGGAGTACTGCGGCGACCGGACGCACCGCTGGAACCTGTGGCAGGCGGACACGCGCAAGTGCTCGATCCACACGGACAAGTCGCTGGAGAACAGCTCGCACCTCGAGTC]




>consensus_6455#0
GGCGCGTGAGTGGATGTGCGTGTGTGTGTTTGTGGTGAGAAATTTCACAACAAAGTAAGA
AAAGGCCGACAAAAGGTGTGCCAGCGGGAGTAGGAAAGAGGAAAGGGAGAAAAAAAGGAA
ATAGGATATCGTACCGGAAGGGTCCGGGCAAAACATGAGTATCCTTTAACTACGACCACA
TCGGCACCAGAGCAGACCAGACACGAACGAAGCATCCGGGCGGGCAAGGAAAGAACGACA
TCCCGCACGCGTGTCTGCCCCAAGCAAAGGCCCCCGCGATGGCCGTTTCCTTTTGTGGCA
AGCGGCTGCTGCTAACGAGGACGAACCTGTTTGCGAACCCGCGACGTCACGGGTACATAG
TGCTAGTGCCCGAGATCGGGGAGGATCTGCCGGAGAAAAACCCACTCTCCAGCTCGACCG
GCCTGCCCGAGTTTAACAATGTGACGATCGAGAAGTGTGTCGGCGCGATCGGGCAGCAGG
CGATCGCGGCGGAGAAGAGTGTGCGGGCGATCGAGGAGCGGCTGGAGCAGGCGGCGGCCG
GCACCGGACCACCCGTGACGGACGTCATCAAGGACATTATACTGCCGCTGGAGGCGACGG
GCGCCCCGCTCGAGACGACCTGGGGCATCGCGAAGACGCTCTACCTCGGCAACAGTTCGC
GCATGCCGACGAAAAGCTACCTGACGATCCACGAGCGGGCCCGCGGTGCCCGGCGGGCCA
AGTTCAACAGCGTGCCGATCTACCGGACGCTCAAGGGGGCGCTCGCGGCGGGCCGCGCCA
AGCCGGACGGCGAGCTGGGCGGCGAGGAGCGGCGGCTGCTGCAGAAGTACGTGCTGGAGG
CGAAGCTGAGCGGGATCGAGGTGGACGGGTCGTCCAAGCTCGAGCTGAACGAGATACTGG
AGCGGCTGGCGCAGGAGCGCTCGCGGTTCGCCGGCAAGCGGGACGTGGCGGTGAAGAAGT
ACCAGCAGGTGATCGAGGACCCGGCGCTGATGAAGGAGTTCCCGCCGAACCTGCTGCAGT
CGCTCGCGACCGACCCGAGCCAGGCGATGAAGGGCCCGTGGCGGATCACGCTGCAGCCGG
CGGTCGCGGAACGCTTCCTGGAGTACTGCGGCGACCGGACGCACCGCTGGAACCTGTGGC
AGGCGGACACGCGCAAGTGCTCGATCCACACGGACAAGTCGCTGGAGAACAGCTCGCACC
TCGAGTC

consensusID : consensus_6455#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 603
fasta sequence

                              [CCGCCCACGTGTCCGAAGAAAAGGCCGACAAAAGGTGTGCCAGCGGGAGTAGGAAAGAGGAAAGGGAGAAAAAAAAGGAAATAGGATATCGTACCGGAAGGGTCCGGGCAAAACATGAGTATCCTTTAACTACGACCACATCGGCACCAGAGCAGACCAGACACGAACGAAGCATCCGGGCGGGCAAGGAAAGAACGACATCCCGCACGCGTGTCTGCCCCAAGCAAAGGCCCCCGCGATGGCCGTTTCCTTTTGTGGCAAGCGACTGCTGCTAACGAGGACGAACCTGTTTGCGAACCCGCGACGTCACGGGTACATAGTGCTAGTGCCCGAGATCGGGGAGGATCTGCCGGAGAAAAACCCACTCTCCAGCTCGACCGGCCTGCCCGAGTTTAACAATGTGACGATCGAGAAGTGTGTCGGCGCGATCGGGCAGCAGGCGATCGCGGCGGAGAAGAGTGTGCGGGCGATCGAGGAGCGGCTGGAGCAGGCGGCGGCCGGCACCGGCCCACCCGTGACGGACGTCATCAAGGACATTATACTGCCGCTGGAGGCGACGGGCGCCCCGCTCGAGACGACCTGTGGCATCGCGAAGACGCTCTA]

[+] EMBL BM651596             [CCGCCCACGTGTCCGAAGAAAAGGCCGACAAAAGGTGTGCCAGCGGGAGTAGGAAAGAGGAAAGGGAGAAAAAAAAGGAAATAGGATATCGTACCGGAAGGGTCCGGGCAAAACATGAGTATCCTTTAACTACGACCACATCGGCACCAGAGCAGACCAGACACGAACGAAGCATCCGGGCGGGCAAGGAAAGAACGACATCCCGCACGCGTGTCTGCCCCAAGCAAAGGCCCCCGCGATGGCCGTTTCCTTTTGTGGCAAGCGACTGCTGCTAACGAGGACGAACCTGTTTGCGAACCCGCGACGTCACGGGTACATAGTGCTAGTGCCCGAGATCGGGGAGGATCTGCCGGAGAAAAACCCACTCTCCAGCTCGACCGGCCTGCCCGAGTTTAACAATGTGACGATCGAGAAGTGTGTCGGCGCGATCGGGCAGCAGGCGATCGCGGCGGAGAAGAGTGTGCGGGCGATCGAGGAGCGGCTGGAGCAGGCGGCGGCCGGCACCGGCCCACCCGTGACGGACGTCATCAAGGACATTATACTGCCGCTGGAGGCGACGGGCGCCCCGCTCGAGACGACCTGTGGCATCGCGAAGACGCTCTA]




>consensus_6455#1
CCGCCCACGTGTCCGAAGAAAAGGCCGACAAAAGGTGTGCCAGCGGGAGTAGGAAAGAGG
AAAGGGAGAAAAAAAAGGAAATAGGATATCGTACCGGAAGGGTCCGGGCAAAACATGAGT
ATCCTTTAACTACGACCACATCGGCACCAGAGCAGACCAGACACGAACGAAGCATCCGGG
CGGGCAAGGAAAGAACGACATCCCGCACGCGTGTCTGCCCCAAGCAAAGGCCCCCGCGAT
GGCCGTTTCCTTTTGTGGCAAGCGACTGCTGCTAACGAGGACGAACCTGTTTGCGAACCC
GCGACGTCACGGGTACATAGTGCTAGTGCCCGAGATCGGGGAGGATCTGCCGGAGAAAAA
CCCACTCTCCAGCTCGACCGGCCTGCCCGAGTTTAACAATGTGACGATCGAGAAGTGTGT
CGGCGCGATCGGGCAGCAGGCGATCGCGGCGGAGAAGAGTGTGCGGGCGATCGAGGAGCG
GCTGGAGCAGGCGGCGGCCGGCACCGGCCCACCCGTGACGGACGTCATCAAGGACATTAT
ACTGCCGCTGGAGGCGACGGGCGCCCCGCTCGAGACGACCTGTGGCATCGCGAAGACGCT
CTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6455#0      GGCGCGTGAGTGGATGTGCGTGTGTGTGTTTGTGGTGAGAAATTTCACA-ACAAAGTAAG 59
consensus_6455#1      ------------------------------------------CCGCCCACGTGTCCGAAG 18
                                                                   * **        ***

consensus_6455#0      AAAAGGCCGACAAAAGGTGTGCCAGCGGGAGTAGGAAAGAGGAAAGGGAGAAAAAAA-GG 118
consensus_6455#1      AAAAGGCCGACAAAAGGTGTGCCAGCGGGAGTAGGAAAGAGGAAAGGGAGAAAAAAAAGG 78
                      ********************************************************* **

consensus_6455#0      AAATAGGATATCGTACCGGAAGGGTCCGGGCAAAACATGAGTATCCTTTAACTACGACCA 178
consensus_6455#1      AAATAGGATATCGTACCGGAAGGGTCCGGGCAAAACATGAGTATCCTTTAACTACGACCA 138
                      ************************************************************

consensus_6455#0      CATCGGCACCAGAGCAGACCAGACACGAACGAAGCATCCGGGCGGGCAAGGAAAGAACGA 238
consensus_6455#1      CATCGGCACCAGAGCAGACCAGACACGAACGAAGCATCCGGGCGGGCAAGGAAAGAACGA 198
                      ************************************************************

consensus_6455#0      CATCCCGCACGCGTGTCTGCCCCAAGCAAAGGCCCCCGCGATGGCCGTTTCCTTTTGTGG 298
consensus_6455#1      CATCCCGCACGCGTGTCTGCCCCAAGCAAAGGCCCCCGCGATGGCCGTTTCCTTTTGTGG 258
                      ************************************************************

consensus_6455#0      CAAGCGGCTGCTGCTAACGAGGACGAACCTGTTTGCGAACCCGCGACGTCACGGGTACAT 358
consensus_6455#1      CAAGCGACTGCTGCTAACGAGGACGAACCTGTTTGCGAACCCGCGACGTCACGGGTACAT 318
                      ****** *****************************************************

consensus_6455#0      AGTGCTAGTGCCCGAGATCGGGGAGGATCTGCCGGAGAAAAACCCACTCTCCAGCTCGAC 418
consensus_6455#1      AGTGCTAGTGCCCGAGATCGGGGAGGATCTGCCGGAGAAAAACCCACTCTCCAGCTCGAC 378
                      ************************************************************

consensus_6455#0      CGGCCTGCCCGAGTTTAACAATGTGACGATCGAGAAGTGTGTCGGCGCGATCGGGCAGCA 478
consensus_6455#1      CGGCCTGCCCGAGTTTAACAATGTGACGATCGAGAAGTGTGTCGGCGCGATCGGGCAGCA 438
                      ************************************************************

consensus_6455#0      GGCGATCGCGGCGGAGAAGAGTGTGCGGGCGATCGAGGAGCGGCTGGAGCAGGCGGCGGC 538
consensus_6455#1      GGCGATCGCGGCGGAGAAGAGTGTGCGGGCGATCGAGGAGCGGCTGGAGCAGGCGGCGGC 498
                      ************************************************************

consensus_6455#0      CGGCACCGGACCACCCGTGACGGACGTCATCAAGGACATTATACTGCCGCTGGAGGCGAC 598
consensus_6455#1      CGGCACCGGCCCACCCGTGACGGACGTCATCAAGGACATTATACTGCCGCTGGAGGCGAC 558
                      ********* **************************************************

consensus_6455#0      GGGCGCCCCGCTCGAGACGACCTGGGGCATCGCGAAGACGCTCTACCTCGGCAACAGTTC 658
consensus_6455#1      GGGCGCCCCGCTCGAGACGACCTGTGGCATCGCGAAGACGCTCTA--------------- 603
                      ************************ ********************               

consensus_6455#0      GCGCATGCCGACGAAAAGCTACCTGACGATCCACGAGCGGGCCCGCGGTGCCCGGCGGGC 718
consensus_6455#1      ------------------------------------------------------------
                                                                                  

consensus_6455#0      CAAGTTCAACAGCGTGCCGATCTACCGGACGCTCAAGGGGGCGCTCGCGGCGGGCCGCGC 778
consensus_6455#1      ------------------------------------------------------------
                                                                                  

consensus_6455#0      CAAGCCGGACGGCGAGCTGGGCGGCGAGGAGCGGCGGCTGCTGCAGAAGTACGTGCTGGA 838
consensus_6455#1      ------------------------------------------------------------
                                                                                  

consensus_6455#0      GGCGAAGCTGAGCGGGATCGAGGTGGACGGGTCGTCCAAGCTCGAGCTGAACGAGATACT 898
consensus_6455#1      ------------------------------------------------------------
                                                                                  

consensus_6455#0      GGAGCGGCTGGCGCAGGAGCGCTCGCGGTTCGCCGGCAAGCGGGACGTGGCGGTGAAGAA 958
consensus_6455#1      ------------------------------------------------------------
                                                                                  

consensus_6455#0      GTACCAGCAGGTGATCGAGGACCCGGCGCTGATGAAGGAGTTCCCGCCGAACCTGCTGCA 1018
consensus_6455#1      ------------------------------------------------------------
                                                                                  

consensus_6455#0      GTCGCTCGCGACCGACCCGAGCCAGGCGATGAAGGGCCCGTGGCGGATCACGCTGCAGCC 1078
consensus_6455#1      ------------------------------------------------------------
                                                                                  

consensus_6455#0      GGCGGTCGCGGAACGCTTCCTGGAGTACTGCGGCGACCGGACGCACCGCTGGAACCTGTG 1138
consensus_6455#1      ------------------------------------------------------------
                                                                                  

consensus_6455#0      GCAGGCGGACACGCGCAAGTGCTCGATCCACACGGACAAGTCGCTGGAGAACAGCTCGCA 1198
consensus_6455#1      ------------------------------------------------------------
                                                                                  

consensus_6455#0      CCTCGAGTC 1207
consensus_6455#1      ---------