cluster # 6456

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Anopheles gambiae
cluster # 6456 cluster # 6456 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6456#0 length = 716 sequences # 1

consensus_6456#1 length = 713 sequences # 4

consensusID : consensus_6456#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 716
fasta sequence

                              [CNNGGTTATCGCCGTCAGACGCCGGGTCTAGCTAGGCGCGCTTTGTTGTGTGTTGGAGCGATCGCGCGGTGGTCACGTTAGCCAGTCTTCCTTCAACCGTACGAAGTACCAGTGCAGTGTGGTGGTGTAGTGAAACGTGCTGTGCTTGTGTGGTGACTAGCGTTGAATGTGTGTGTACGTGAGTGACAGGGAATAGTGGAAGATTCCGGCAGCAAAACCCATCCCGAATCCCATTTTGCCAAATTGCGGACTTAGTGAGGCAACGCAAAGTGACGGAAACAGTGGCCGAAACAGGGTTACAGGTTAGTTTGCGCTTTCTTCTTTTGGACTACACCAGCAGCAGTAGTTATTGTTACCCACATCATCATCATCATCATCATCATCATCAAAACATTATCATCACATTACCGTCAACTTCGTCATTTACATACCAGTTGNCAGTGTNNGTGCGCTTGTGCTTGCGGTTGGATGGCTGTGCGAATTTTGCACTACTTGGTGTGCCCGGAAAGGGATACGAAATTGAAGAAAATTAGACAATATGACGACCTACAAATCTGTGCGCGGAACCCCGCGAAACGCACGGTCGCTTGTCCACGTGTCGCAATGGGGAGTTCCCTCCCCTTAGTAACTTTTGAGTGTATGGAGGGGGTTTTCAAGCAGATGCGTTGAAGCCTGGTACATACTTCTTTACTCCCTCATACACCAACATATGTTGC]

[+] EMBL AL694947             [CNNGGTTATCGCCGTCAGACGCCGGGTCTAGCTAGGCGCGCTTTGTTGTGTGTTGGAGCGATCGCGCGGTGGTCACGTTAGCCAGTCTTCCTTCAACCGTACGAAGTACCAGTGCAGTGTGGTGGTGTAGTGAAACGTGCTGTGCTTGTGTGGTGACTAGCGTTGAATGTGTGTGTACGTGAGTGACAGGGAATAGTGGAAGATTCCGGCAGCAAAACCCATCCCGAATCCCATTTTGCCAAATTGCGGACTTAGTGAGGCAACGCAAAGTGACGGAAACAGTGGCCGAAACAGGGTTACAGGTTAGTTTGCGCTTTCTTCTTTTGGACTACACCAGCAGCAGTAGTTATTGTTACCCACATCATCATCATCATCATCATCATCATCAAAACATTATCATCACATTACCGTCAACTTCGTCATTTACATACCAGTTGNCAGTGTNNGTGCGCTTGTGCTTGCGGTTGGATGGCTGTGCGAATTTTGCACTACTTGGTGTGCCCGGAAAGGGATACGAAATTGAAGAAAATTAGACAATATGACGACCTACAAATCTGTGCGCGGAACCCCGCGAAACGCACGGTCGCTTGTCCACGTGTCGCAATGGGGAGTTCCCTCCCCTTAGTAACTTTTGAGTGTATGGAGGGGGTTTTCAAGCAGATGCGTTGAAGCCTGGTACATACTTCTTTACTCCCTCATACACCAACATATGTTGC]




>consensus_6456#0
CNNGGTTATCGCCGTCAGACGCCGGGTCTAGCTAGGCGCGCTTTGTTGTGTGTTGGAGCG
ATCGCGCGGTGGTCACGTTAGCCAGTCTTCCTTCAACCGTACGAAGTACCAGTGCAGTGT
GGTGGTGTAGTGAAACGTGCTGTGCTTGTGTGGTGACTAGCGTTGAATGTGTGTGTACGT
GAGTGACAGGGAATAGTGGAAGATTCCGGCAGCAAAACCCATCCCGAATCCCATTTTGCC
AAATTGCGGACTTAGTGAGGCAACGCAAAGTGACGGAAACAGTGGCCGAAACAGGGTTAC
AGGTTAGTTTGCGCTTTCTTCTTTTGGACTACACCAGCAGCAGTAGTTATTGTTACCCAC
ATCATCATCATCATCATCATCATCATCAAAACATTATCATCACATTACCGTCAACTTCGT
CATTTACATACCAGTTGNCAGTGTNNGTGCGCTTGTGCTTGCGGTTGGATGGCTGTGCGA
ATTTTGCACTACTTGGTGTGCCCGGAAAGGGATACGAAATTGAAGAAAATTAGACAATAT
GACGACCTACAAATCTGTGCGCGGAACCCCGCGAAACGCACGGTCGCTTGTCCACGTGTC
GCAATGGGGAGTTCCCTCCCCTTAGTAACTTTTGAGTGTATGGAGGGGGTTTTCAAGCAG
ATGCGTTGAAGCCTGGTACATACTTCTTTACTCCCTCATACACCAACATATGTTGC

consensusID : consensus_6456#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 713
fasta sequence

                              [CCGCCCACGCGTCCGGCCG-AGACGGTCGCCGTCAGACGCCGGGTCTAGCTAGGCGCGCTTTGTTGTGTGTTGGAGCGATCGCACGGTGCTCACGTTAGCCAGTCTTCCTTCAACCGTACGAAGTACCAGTGCAGTGTGGTGGTGTAGTGAAACGTGCTGTGCTTGTGTGGTGACTAGCGTTGAATGTGTGTGTACGTGAGTGACAGGGAATAGTGGAAGATTCCGGCAGCAAAACCCATCCCGAATCCCATTTTGCCAAATTGCGGACTTAGTGAGGCAACGCAAAGTGACGGAAACAGTGGCCCGAAACAGGGTTACAGTATTATCAAGATGCCTTCGGAGGAAGGGAATGTTTCCTCCCAGTCGTCCAGCGGCGACACGAAGCGCAAGGTCAGCATCATCACCGAACCGGTCGTCGAGCGATTAGGTCACGATAATTTGGGCTTTGAGCAGAACAAACGCAAAATATCGCAGCAATCGCATCATTCCGAGGAAGGACCGGCGCGAAGGAAAAGTAACCTGCACAATAACAACTTTGACACCTCGTCCATCCACAGCGATCGCTACAATGGCGAGGCTGGTGGTCGTGCCAAAAAGCAATCATTCTCGGAGGCGCTGGAAAAGATCGAACGAGACTATGATAACTCCCGGCTGGAGCAGTCGTGGATCTATTCGCTGTGCATG-CGATGTCGGGTGGAGTACACAACGCCCTC]

[+] EMBL BM647797             [CCGCCCACGCGTCCGGCGA AGACGGTCGCCGTCAGACGCCGGGTCTAGCTAGGCGCGCTTTGTTGTGTGTTGGAGCGATCGCGCGGTGGTCACGTTAGCCAGTCTTCCTTCAACCGTACGAAGTACCAGTGCAGTGTGGTGGTGTAGTGAAACGTGCTGTGCTTGTGTGGTGACTAGCGTTGAATGTGTGTGTACGTGAGTGACAGGGAATAGTGGAAGATTCCGGCAGCAAAACCCATCCCGAATCCCATTTTGCCAAATTGCGGACTTAGTGAGGCAACGCAAAGTGACGGAAACAGTGGCCCGAAACAGGGTTACAGTATTATCAAGATGCCTTCGGAGGAAGGGAATGTTTCCTCCCAGTCGTCCAGCGGCGACACGAAGCGCAAGGTCAGCATCATCACCGAACCGGTCGTCGAGCGATTAGGTCACGATAATTTGGGCTTTGAGCAGAACAAACGCAAAATATCGCAGCAATCGCATCATTCCGAGGAAGGACCGGCGCGAAGGAAAAGTAACCTGCACAATAACAACTTTGACACCTCGTCCATCCACAGCGATCGCTACAATGGCGAGGCTGGTGGTCGTGCCAAAAAGCAATCATTCTCGGAGGCGCTGGAAAAGATCGAACGAGACTATGATAACTCCCGGCTGGAGCAGTCGTGGATCTAT                                          ]
[+] EMBL BM654380             [                CCGAAGACGGTCGCCGTCAGACGCCGGGT    CTAGGCGCGCTTTGTTGTGTGTTGGAGCGATCGCACGGTGCTCACGTTAGCCAGTCTTCCTTCAACCGTACGAAGTACCAGTGCAGTGTGGTGGTGTAGTGAAACGTGCTGTGCTTGTGTGGTGACTAGCGTTGAATGTGTGTGTACGTGAGTGACAGGGAATAGTGGAAGATTCCGGCAGCAAAACCCATCCCGAATCCCATTTTGCCAAATTGCGGACTTAGTGAGGCAACGCAAAGTGACGGAAACAGTGGCCCGAAACAGGGTTACAGTATTATCAAGATGCCTTCGGAGGAAGGGAATGTTTCCTCCCAGTCGTCCAGCGGCGACACGAAGCGCAAGGTCAGCATCATCACCGAACCGGTCGTCGAGCGATTAGGTCACGATAATTTGGCCTTTGAGCAGAACAAACGCAAAATATCGCAGCAATCGCATCATTCCTAGGAAGGACCGGCGCGAAGGAAAAGTAACCTGCACAATAACAACTTTGACACCTCGTCCATCCACAGCGATCGCTACAATGGCGAGGCTGGTGGTCGTGCCAAAAAGCAATCATTCTCGGAGGCGCTGGAAAAGATCGAACGAGACTATGATAACTCCCGGCTGGAGCAGTCGTGGATCTATTCGCTGTGCATGACGATGTCGGGTGGAGTACACAACGCCCTC]
[+] EMBL BM637200             [                CCG AGACGGTCGCCGTCAGACGCCGGGTCTAGCTAGGCGCGCTTTGTTGTGTGTTGGAGCGATCGCACGGTGCTCACGTTAGCCAGTCTTCCTTCAACCGTACGAAGTACCAGTGCAGTGTGGTGGTGTAGTGAAACGTGCTGTGCTTGTGTGGTGACTAGCGTTGAATGTGTGTGTACGTGAGTGACAGGGAATAGTGGAAGATTCCGGCAGCAAAACCCATCCCGAATCCCATTTTGCCAAATTGCGGACTTAGTGAGGCAACGCAAAGTGACGGAAACAGTGGCCCGAAACAGGGTTACAGTATTATCAAGATGCCTTCGGAGGAAGGGAATGTTTCCTCCCAGTCGTCCAGCGGCGACACGAAGCGCAAGGTCAGCATCATCACCGAACCGGTCGTCGAGCGATTAGGTCACGATAATTTGGGCTTTGAGCAGAACAAACGCAAAATATCGCAGCAATCGCATCATTCCGAGGAAGGACCGGCGCGAAGGAAAAGTAACCTGCACAACAACAACTTTGACACCTCGTCCATCCACAGCGATCGCTACAATGGCGAGGCTGGTGGTCGTGCCAAAAAGCAATCGTTCTCGGAGGCGCTGGAAAAGATCGAACGAGACTATGATAACTCCCGGCTGGAGCAGTCGTGGATCTATTCGCTGTGCATG CGATGTCGGGTGGAGTA            ]
[+] EMBL BM584008             [                                ccgGACGCCGGGTCTAGCTAGGCGCGCTTTGTTGTGTGTTGGAGCGATCGCACGGTGCTCACGTTAGCCAGTCTTCCTTCAACCGTACGAAGTACCAGTGCAGTGTGGTGGTGTAGTGAAACGTGCTGTGCTTGTGTGGTGACTAGCGTTGAATGTGTGTGTACGTGAGTGACAGGGAATAGTGGAAGATTCCGGCAGCAAAACCCATCCCGAATCCCATTTTGCCAAATTGCGGACTTAGTGAGGCAACGCAAAGTGACGGAAACAGTGGCCCGAAACAGGGTTACAGTATTATCAAGATGCCTTCGGAGGAAGGGAATGTTTCCTCCCAGTCGTCCAGCGGCGACACGAAGCGCAAGGTCAGCATCATCACCGAACCGGTCGTCGAGCGATTAGGTCACGATAATTTGGGCTTTGAGCAGAACAAACGCAAAATATCGCAGCAATCGCATCATTCCGAGGAAGGACCGGCGCGAAGGAAAAGTAACCTGCACAACAACAACTTTGACACCTCGTCCATCCACAGCGATCGCTACAATGGCGAGGCTGGTGGTCGTGCCAAAAAGCAATCGTTCTCGGAGGCGCTGGAAAAGATCGAACGAGACTATGATAACTCCCGGCTGGAGCAGTCGTGGATCTATTCGCTGTGCATG CGATGTCGGGTGGA               ]




>consensus_6456#1
CCGCCCACGCGTCCGGCCGAGACGGTCGCCGTCAGACGCCGGGTCTAGCTAGGCGCGCTT
TGTTGTGTGTTGGAGCGATCGCACGGTGCTCACGTTAGCCAGTCTTCCTTCAACCGTACG
AAGTACCAGTGCAGTGTGGTGGTGTAGTGAAACGTGCTGTGCTTGTGTGGTGACTAGCGT
TGAATGTGTGTGTACGTGAGTGACAGGGAATAGTGGAAGATTCCGGCAGCAAAACCCATC
CCGAATCCCATTTTGCCAAATTGCGGACTTAGTGAGGCAACGCAAAGTGACGGAAACAGT
GGCCCGAAACAGGGTTACAGTATTATCAAGATGCCTTCGGAGGAAGGGAATGTTTCCTCC
CAGTCGTCCAGCGGCGACACGAAGCGCAAGGTCAGCATCATCACCGAACCGGTCGTCGAG
CGATTAGGTCACGATAATTTGGGCTTTGAGCAGAACAAACGCAAAATATCGCAGCAATCG
CATCATTCCGAGGAAGGACCGGCGCGAAGGAAAAGTAACCTGCACAATAACAACTTTGAC
ACCTCGTCCATCCACAGCGATCGCTACAATGGCGAGGCTGGTGGTCGTGCCAAAAAGCAA
TCATTCTCGGAGGCGCTGGAAAAGATCGAACGAGACTATGATAACTCCCGGCTGGAGCAG
TCGTGGATCTATTCGCTGTGCATGCGATGTCGGGTGGAGTACACAACGCCCTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6456#0      -----------------CNNGGTTATCGCCGTCAGACGCCGGGTCTAGCTAGGCGCGCTT 43
consensus_6456#1      CCGCCCACGCGTCCGGCCGAGACGGTCGCCGTCAGACGCCGGGTCTAGCTAGGCGCGCTT 60
                                       *  *    ***********************************

consensus_6456#0      TGTTGTGTGTTGGAGCGATCGCGCGGTGGTCACGTTAGCCAGTCTTCCTTCAACCGTACG 103
consensus_6456#1      TGTTGTGTGTTGGAGCGATCGCACGGTGCTCACGTTAGCCAGTCTTCCTTCAACCGTACG 120
                      ********************** ***** *******************************

consensus_6456#0      AAGTACCAGTGCAGTGTGGTGGTGTAGTGAAACGTGCTGTGCTTGTGTGGTGACTAGCGT 163
consensus_6456#1      AAGTACCAGTGCAGTGTGGTGGTGTAGTGAAACGTGCTGTGCTTGTGTGGTGACTAGCGT 180
                      ************************************************************

consensus_6456#0      TGAATGTGTGTGTACGTGAGTGACAGGGAATAGTGGAAGATTCCGGCAGCAAAACCCATC 223
consensus_6456#1      TGAATGTGTGTGTACGTGAGTGACAGGGAATAGTGGAAGATTCCGGCAGCAAAACCCATC 240
                      ************************************************************

consensus_6456#0      CCGAATCCCATTTTGCCAAATTGCGGACTTAGTGAGGCAACGCAAAGTGACGGAAACAGT 283
consensus_6456#1      CCGAATCCCATTTTGCCAAATTGCGGACTTAGTGAGGCAACGCAAAGTGACGGAAACAGT 300
                      ************************************************************

consensus_6456#0      GGCC-GAAACAGGGTTACAGGTTAGTTTGCGCTTTCTTCTTTTGGACTACACCAGCAGCA 342
consensus_6456#1      GGCCCGAAACAGGGTTACAG---------------TATTATCAAGATGCCTTCGGAGGAA 345
                      **** ***************                 *  *   **   *  * *  * *

consensus_6456#0      GTAGTTATTGTTACCCACATCATCATCATCATCATCATCATCATCAAAACATTATCATCA 402
consensus_6456#1      GGGAATGTTTCCTCCCAGTCGTCCAGCGGCGACACGA--AGCGCAAGGTCAGCATCATCA 403
                      *    * **    ****      ** *  *  **  *  * *   *   **  *******

consensus_6456#0      CATTACCGTCAACTTCGTCATTTACATACCAGTTGNCAGTGTNNGTGCGCTTGTGCTTGC 462
consensus_6456#1      CCGAACCGG-----TCGTCG----------AGCGATTAGGTCACGATAATTTGGGCTTTG 448
                      *   ****      *****           **     **     *     *** ****  

consensus_6456#0      GGTTGGATGGCTGTGCGAATTTTGCACTACTTGGTGTGCCCGGAAAGGGATACGAAATTG 522
consensus_6456#1      AGCAGAACAAACGCA-AAATATCGCAGCAATCGCATCATTCCGAGGAAGGACCGGCGCGA 507
                       *  * *     *    *** * ***  * * *       * **    *   **      

consensus_6456#0      AAGAAAATTAGACAATATGACGACCTACAAATCTGTGCGCGGAACCCCGCGAAACGC-AC 581
consensus_6456#1      AGGAAAAGTAACCTGCACAATAACAACTTTGACACCTCGTCCATCCACAGCGATCGCTAC 567
                      * ***** **  *   *  *  **        *    **   * ** *    * *** **

consensus_6456#0      GGTCGCTTGTCCACGTGTCGCAATGGGGAGTTCCCTCCCCTTAGTAACTTTTGAGTGTAT 641
consensus_6456#1      AATGGCGAGGCTGGTGGTCGTGCCAAAAAGCAATCATTC-TCGGAGGCGCTGGAAAAGAT 626
                        * **  * *     ****        **    *   * *  *   *  * **    **

consensus_6456#0      GGAGGGGGTTTTCAAGCAGATGCGTTGAAGCCTGGTACATACTTCTTTACTCCCTCATAC 701
consensus_6456#1      CGAACGAGACTATGATAACTCCCGGCTGGAGCAGTCGTGGATCTATTCGCTGTG-CATGC 685
                       **  * *  *   *  *    **       * *      *  * **  **    *** *

consensus_6456#0      ACCAACATATGTTGC------------- 716
consensus_6456#1      GATGTCGGGTGGAGTACACAACGCCCTC 713
                           *   **  *