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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6457#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 974 fasta sequence
[TCCCCGAGGTTTAAGATAAACGGTTGCTAGAAATTCTCAGCAATCCGAGCGTTCGCATCCGCTCGAGACGCTGCACAAGTGTGAGGCCGCGCTAACGAGCCAGCTGGGATCGATCCGCGAAACGCCAACGAACAACCCGCTGGTCGAGGCCGTCTCGAGCAGTCTGCAGTGCTGCCACGGGCAACACACCCTGCAGCGTACCTTCCTGGCCCTGTCTGGAGGCGCTGTTCGGGCCGGACATTAAAAATTTGGCCCCGCGGCAAAGCAATCCCGACTGGCGCTGGACNGATACGNGGCGCGGCCCGGTGGAACGGGTGGGCGGATGTGACTACCTGGTGGTGCGACTACCAACAACACAGCACTCGACATGCTGGCCGTACGAACTGGTAGTGNATCGTCTACTACCAGCACCACCGCCAGCAGCACCAC-TGCACCGCAG-GAGATACCGCACATTCTGCAGGGC-GAAATCGCTCGGCTGGATCAGAAGTTCAAGGTATCGCTGGACCAGTGCGCCATCAGCGGTACGCGCACGATCAAGCTAATCTGCTGGC-TGGACGATAAAAATCTGCCCTGCGTGCCGCCGGTCGCCGTCACCATCCCGGAGGACTACCCATCGACCGCCCCGAGCTGCTCGCTGATCGAGCAAGAGTATAACGCGACGCCATTCCTGATACTGGTGCAGAAATCGCTGATGGCGCGCATCTGCAAGCTGCCGGGACTGTTCACGCTATCGCATCTGCTCGACACGTGGGAAATGTCGGTCAGGCAGGCGTGCTCGCCGAATCCAACGATTGTAGCACCCACTGGCACGAGCGTCCTGCTGGGCATGTAATGTTAAATAATGAAGCCGACCGCCGAGCAGGAGAGTGCACAATAGAAGTGAATTTTATATTACCACCCACAAGAATGCGCAAGTGTATGCGGCCAAACGGATTTATTGTGCATGTAATATGGCCGACTGAACCATTTTTAAA]
[+] EMBL AL694575 [TCCCCGAGGTTTAAGATAAACGGTTGCTAGAAATTCTCAGCAATCCGAGCGTTCGCATCCGCTCGAGACGCTGCACAAGTGTGAGGCCGCGCTAACGAGCCAGCTGGGATCGATCCGCGAAACGCCAACGAACAACCCGCTGGTCGAGGCCGTCTCGAGCAGTCTGCAGTGCTGCCACGGGCAACACACCCTGCAGCGTACCTTCCTGGCCCTGTCTGGAGGCGCTGTTCGGGCCGGACATTAAAAATTTGGCCCCGCGGCAAAGCAATCCCGACTGGCGCTGGACNGATACGNGGCGCGGCCCGGTGGAACGGGTGGGCGGATGTGACTACCTGGTGGTGCGACTACCAACAACACAGCACTCGACATGCTGGCCGTACGAACTGGTAGTGNATCGTCTACTAACAG ACCAACG CAGCAGCACCACTTGNACCGCAGTGAGATACCCGACATTCTGCAGGGCTGAAATCGCTCGGCTGGATCAGAAGTTCAAGGTATCGCTGGACCAGTGCGCCATCAGCGGTACGCGCACGATCAAGCTAATCTGCTGGCTTGGACGATAAAAATCTG ]
[+] EMBL AGA283468 [ TAGTGCATCGTCTACTACCAGCACCACCGCCAGCAGCACCAC TGCACCGCAG GAGATACCGCACATTCTGCAGGGC GAAATCGCTCGGCTGGATCAGAAGTTCAAGGTATCGCTGGACCAGTGCGCCATCAGCGGTACGCGCACGATCAAGCTAATCTGCTGGC TGGACGATAAAAATCTGCCCTGCGTGCCGCCGGTCGCCGTCACCATCCCGGAGGACTACCCATCGACCGCCCCGAGCTGCTCGCTGATCGAGCAAGAGTATAACGCGACGCCATTCCTGATACTGGTGCAGAAATCGCTGATGGCGCGCATCTGCAAGCTGCCGGGACTGTTCACGCTATCGCATCTGCTCGACACGTGGGAAATGTCGGTCAGGCAGGCGTGCTCGCCGAATCCAACGATTGTAGCACCCACTGGCACGAGCGTCCTGCT ]
[+] EMBL BX614972 [ TCTACTACCAGCACCACCGCCAGCAGCACCAC GGCACCGCAG GAGAAACCGCACATTCTGCAGGGC GAAATCGCTCGGCTGGATCAGAAGTTCAAGGGATCGCTGGACCAGTGCGCCATCAGCGGTACGCGCACGAACAAGCTAATCTGCTGGC TGGACGAAAAAAATCTGCCCTGCGTGCCGCCGGGCGCCGTCACCATCCCGGAGGAATACCCATCGACCGCCCCGAGCTGCTCGCTGAACGAGCAAGAGTATAACGCGACGCCATTCCTGAAACTGGTGCAGAAATCGCTGAAGGCGCGCATCTG ]
[-] EMBL AGA284764 [ GATCAAGCTAATCTGCTGGC TGGACGATAAAAATCTGCCCTGCGTGCCGCCGGTCGCCGTCACCATCCCGGAGGACTACCCATCGACCGCCCCGAGCTGCTCGCTGATCGAGCAAGAGTATAACGCGACGCCATTCCTGATACTGGTGCAGAAATCGCTGATGGCGCGCATCTGCAAGCTGCCGGGACTGTTCACGCTATCGCATCTGCTCGACACGTGGGAAATGTCGGTCAGGCAGGCGTGCTCGCCGAATCCAACGATTGTAGCACCCACTGGCACGAGCGTCCTGCTGGGCATGTAATGTTAAATAATGAAGCCGACCGCCGAGCAGGAGAGTGCACAATAGAAGTGAATTTTATATTACCACCCACAAGAATGCGCAAGTGTATGCGGCCAAACGGATTTATTGTGCATGTAATATGGCCGACTGAACCATTTTTAAA]
consensusID : consensus_6457#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence
[CAGGTTACGGCGGCTCGTTAACACGCCCGGCAGCCGGGTTGCGCCGTGCCCAGCCCGCTAAACCCGCAGGACGAGCAGCTGTACCTGGGAGAAGTATCTGCGCCCTCACCAAGTACATCGAACCGCTGAAACGGATGATCGCAAAGATGGAGAACGACGATATCGATAAGATTGCGAAGATGAAACGGTTGCTAGAAATTCTCAGCAATCCGAGCGTTCGCATNCCGCTCGAGACGCTGCACAAGTGTGAGGCCGCGCTAACGAGCCAGCTGGGATCGATCCGCGAAACGCCAACGAACAAACCGCTGGTCGAGGCCGTCTCGAGCAGTCTGGAGGCTGGCACTGGGCAACCANAACCTGCAGCGTACCTTCCGGCCCTGGTCTGGAGGCGCTGTTCGGGCCGGACATTAAAAATTTGGCCCCAACGGCAAAGCAATCCCGAACTGGCGCTGGACCGATACAGGG]
[+] EMBL AL695419 [CAGGTTACGGCGGCTCGTTAACACGCCCGGCAGCCGGGTTGCGCCGTGCCCAGCCCGCTAAACCCGCAGGACGAGCAGCTGTACCTGGGAGAAGTATCTGCGCCCTCACCAAGTACATCGAACCGCTGAAACGGATGATCGCAAAGATGGAGAACGACGATATCGATAAGATTGCGAAGATGAAACGGTTGCTAGAAATTCTCAGCAATCCGAGCGTTCGCATNCCGCTCGAGACGCTGCACAAGTGTGAGGCCGCGCTAACGAGCCAGCTGGGATCGATCCGCGAAACGCCAACGAACAAACCGCTGGTCGAGGCCGTCTCGAGCAGTCTGGAGGCTGGCACTGGGCAACCANAACCTGCAGCGTACCTTCCGGCCCTGGTCTGGAGGCGCTGTTCGGGCCGGACATTAAAAATTTGGCCCCAACGGCAAAGCAATCCCGAACTGGCGCTGGACCGATACAGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6457#0 ------------------------------------------------------------
consensus_6457#1 CAGGTTACGGCGGCTCGTTAACACGCCCGGCAGCCGGGTTGCGCCGTGCCCAGCCCGCTA 60
consensus_6457#0 ------------------------------------------------------------
consensus_6457#1 AACCCGCAGGACGAGCAGCTGTACCTGGGAGAAGTATCTGCGCCCTCACCAAGTACATCG 120
consensus_6457#0 ------------------------------------------TCCCCGAGGTTT--AAGA 16
consensus_6457#1 AACCGCTGAAACGGATGATCGCAAAGATGGAGAACGACGATATCGATAAGATTGCGAAGA 180
** ** ** ****
consensus_6457#0 T-AAACGGTTGCTAGAAATTCTCAGCAATCCGAGCGTTCGCATCC-GCTCGAGACGCTGC 74
consensus_6457#1 TGAAACGGTTGCTAGAAATTCTCAGCAATCCGAGCGTTCGCATNCCGCTCGAGACGCTGC 240
* ***************************************** * **************
consensus_6457#0 ACAAGTGTGAGGCCGCGCTAACGAGCCAGCTGGGATCGATCCGCGAAACGCCAACGAACA 134
consensus_6457#1 ACAAGTGTGAGGCCGCGCTAACGAGCCAGCTGGGATCGATCCGCGAAACGCCAACGAACA 300
************************************************************
consensus_6457#0 ACCCGCTGGTCGAGGCCGTCTCGAGCAGTCTGCAGTGCTGCCAC-GGGCAAC-ACACCCT 192
consensus_6457#1 AACCGCTGGTCGAGGCCGTCTCGAGCAGTCTGGAG-GCTGGCACTGGGCAACCANAACCT 359
* ****************************** ** **** *** ******* * * ***
consensus_6457#0 GCAGCGTACCTTCCTGGCCCTGTCTGGAGGCGCTGTTCGGGCCGGACATTAAAAATTTGG 252
consensus_6457#1 GCAGCGTACCTTCCGGCCCTGGTCTGGAGGCGCTGTTCGGGCCGGACATTAAAAATTTGG 419
************** * ** ***************************************
consensus_6457#0 CCCCG-CGGCAAAGCAATCCCGA-CTGGCGCTGGACNGATACGNGGCGCGGCCCGGTGGA 310
consensus_6457#1 CCCCAACGGCAAAGCAATCCCGAACTGGCGCTGGACCGATACAGGG-------------- 465
**** ***************** ************ ***** **
consensus_6457#0 ACGGGTGGGCGGATGTGACTACCTGGTGGTGCGACTACCAACAACACAGCACTCGACATG 370
consensus_6457#1 ------------------------------------------------------------
consensus_6457#0 CTGGCCGTACGAACTGGTAGTGNATCGTCTACTACCAGCACCACCGCCAGCAGCACCACT 430
consensus_6457#1 ------------------------------------------------------------
consensus_6457#0 GCACCGCAGGAGATACCGCACATTCTGCAGGGCGAAATCGCTCGGCTGGATCAGAAGTTC 490
consensus_6457#1 ------------------------------------------------------------
consensus_6457#0 AAGGTATCGCTGGACCAGTGCGCCATCAGCGGTACGCGCACGATCAAGCTAATCTGCTGG 550
consensus_6457#1 ------------------------------------------------------------
consensus_6457#0 CTGGACGATAAAAATCTGCCCTGCGTGCCGCCGGTCGCCGTCACCATCCCGGAGGACTAC 610
consensus_6457#1 ------------------------------------------------------------
consensus_6457#0 CCATCGACCGCCCCGAGCTGCTCGCTGATCGAGCAAGAGTATAACGCGACGCCATTCCTG 670
consensus_6457#1 ------------------------------------------------------------
consensus_6457#0 ATACTGGTGCAGAAATCGCTGATGGCGCGCATCTGCAAGCTGCCGGGACTGTTCACGCTA 730
consensus_6457#1 ------------------------------------------------------------
consensus_6457#0 TCGCATCTGCTCGACACGTGGGAAATGTCGGTCAGGCAGGCGTGCTCGCCGAATCCAACG 790
consensus_6457#1 ------------------------------------------------------------
consensus_6457#0 ATTGTAGCACCCACTGGCACGAGCGTCCTGCTGGGCATGTAATGTTAAATAATGAAGCCG 850
consensus_6457#1 ------------------------------------------------------------
consensus_6457#0 ACCGCCGAGCAGGAGAGTGCACAATAGAAGTGAATTTTATATTACCACCCACAAGAATGC 910
consensus_6457#1 ------------------------------------------------------------
consensus_6457#0 GCAAGTGTATGCGGCCAAACGGATTTATTGTGCATGTAATATGGCCGACTGAACCATTTT 970
consensus_6457#1 ------------------------------------------------------------
consensus_6457#0 TAAA 974
consensus_6457#1 ----
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||