These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6462#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 647 fasta sequence [GAGTACATCNTCCNCCGTTCTTCCGGCTGCTGAAGCAGCGGTGGGCCACCAACTTCGATTCGCTCGAGAAGTACTATCTGAAGATTCGGCTGCGCCACAACGAGACGGGCGAGTATGCGCAACGGTACGAGCACTTCCCGAACTTCTACCACGCGGCCACGATGGATCACGGCTACTGGACGACGCCCGAGTTCGACTGCAAGGGCTACGTGAAGAAGTGGCTCATAACGTACGCGGTGCCGTTCTTCGGCTGGGACAGCCTGAAGGCGAAGCTAGAATTCAAGGGAGTCGTTGCAGTTTCAATGAACATGCTCCAGCTGGATATCAACCAATGTCCGGATGATTATTACGAGCCGAATGCATTCAAAAACACTCACAAATGCGACGAGAAGTCTTCATACTGTGTCCCGATCCTGGGCCGCGGGTACGAAACGGGCGGCTATAAGTGCGAGTGCCTGCAAGGGTTCGAGTATCCGTACGAGGATCTGATCACCTACTATGACGGGCAGCTGGTCGAGGCCGAGTTCGAGAACATCGTGAATGATAAGGAATCGCGGTTCGAGACGNTCAAGTGCCGTCTGGCCGGGGCGGCCGCCCTGCAGGTGCAGTTTACCATCGTCGTCTTTGTGTCGCTGTTCNGGTGGATA] [+] EMBL BX626308 [GAGTACATCNTCCNCCGTTCTTCCGGCTGCTGAAGCAGCGGTGGGCCACCAACTTCGATTCGCTCGAGAAGTACTATCTGAAGATTCGGCTGCGCCACAACGAGACGGGCGAGTATGCGCAACGGTACGAGCACTTCCCGAACTTCTACCACGCGGCCACGATGGATCACGGCTACTGGACGACGCCCGAGTTCGACTGCAAGGGCTACGTGAAGAAGTGGCTCATAACGTACGCGGTGCCGTTCTTCGGCTGGGACAGCCTGAAGGCGAAGCTAGAATTCAAGGGAGTCGTTGCAGTTTCAATGAACATGCTCCAGCTGGATATCAACCAATGTCCGGATGATTATTACGAGCCGAATGCATTCAAAAACACTCACAAATGCGACGAGAAGTCTTCATACTGTGTCCCGATCCTGGGCCGCGGGTACGAAACGGGCGGCTATAAGTGCGAGTGCCTGCAAGGGTTCGAGTATCCGTACGAGGATCTGATCACCTACTATGACGGGCAGCTGGTCGAGGCCGAGTTCGAGAACATCGTGAATGATAAGGAATCGCGGTTCGAGACGNTCAAGTGCCGTCTGGCCGGGGCGGCCGCCCTGCAGGTGCAGTTTACCATCGTCGTCTTTGTGTCGCTGTTCNGGTGGATA] [-] EMBL AGA280627 [ GAAGATTCGGNTGCGCCACAACGAGACGGGCGAGTATGCGCAACGTTACGAGCACTTCCCGAACTTCTACCACGCGCCCACGATGGATCACGGCTACTGGACGACGCCCGAGTTCGACTGCAAGGGCTACGTGAAGAAGTGGCTCATAACGTACGCGGTGCCGTTCTTCGGCTGGGACAGCCTGAAGGCGAAGCTAGAATTCAAGGGAGTCGTTGCAGTTTCAATGAACATGCTCCAGCTGGATATCAACCAATGTCCGGATGATTATTACGAGCCGAATGCATTCAAAAACACTCACAAATGCGACGAGAAGTCTTCATACTGTGTCCCGATCCTGGGCCGCGGGTACGAAACGGGCGGCTATAAGTGCGAGTGCCTGCAAGGGTTCGAGTATCCGTACGAGGATCTGATCACCTACTATGACGGGCAGCTGGTCGAGTCCGAGTTCGAGAACATCGTGAATGATAAGGAATCGCGGTTCGAGACGTTCAAGTGCCGT ] consensusID : consensus_6462#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 575 fasta sequence [GCCAGACNTCGGCACNTATGGCGCAACGGTACGAGCACTTCCCGAACTTCTACCACGCGGCCACGATGGATCACGGCTACTGGACGACGCCCGAGTTCGACTGCAAGGGCTACGTGAAGAAGTGGCTCATAACGTACGCGGTGCCGTTCTTCGGCTGGGACAGCCTGAAGGCGAAGCTAGAATTCAAGGGAGTCGTTGCAGTTTCAATGAACATGCTCCAGCTGGATATCAACCAATGTCCGGATGATTATTACGAGCCGAATGCATTCAAAAACACTCACAAATGCGACGAGAAGTCTTCATACTGTGTCCCGATCCTGGGCCGCGGGTACGAAACGGGCGGCTATAAGTGCGAGTGCCTG-CAAGGGTTCGAGTATCCGTACGAGGATCTGATCACCTACT-ATGACGGGCAGCTGGTCGAGGCCGAGTTCGAGAACATCGTGAATGAT-AAGGAATCGCGGTTCGAGACGTTCAAGTGCCGTCTG-GCCGGGGCGGCCGCCCTGC-AGGTGCAGTTTA-CCATCGTCG-TC-TTTGTG-TCGCTG-TTC-GGGTGGGATATTGCTGCGCCGGAATCTCCAGTG] [+] EMBL BX468481 [GCCAGACNTCGGCACNTATGGCGCAACGGTACGAGCACTTCCCGAACTTCTACCACGCGGCCACGATGGATCACGGCTACTGGACGACGCCCGAGTTCGACTGCAAGGGCTACGTGAAGAAGTGGCTCATAACGTACGCGGTGCCGTTCTTCGGCTGGGACAGCCTGAAGGCGAAGCTAGAATTCAAGGGAGTCGTTGCAGTTTCAATGAACATGCTCCAGCTGGATATCAACCAATGTCCGGATGATTATTACGAGCCGAATGCATTCAAAAACACTCACAAATGCGACGAGAAGTCTTCATACTGTGTCCCGATCCTGGGCCGCGGGTACGAAACGGGCGGCTATAAGTGCGAGTGCCTG CAAGGGTTCGAGTATCCGTACGAGGATCTGATCACCTACT ATGACGGGCAGCTGGTCGAGGCCGAGTTCGAGAACATCGTGAATGAT AAGGAATCGCGGTTCGAGACGTTCAAGTGCCGTCTG GCCGGGGCGGCCGCCCTGC AGGTGCAGTTTA CCATCGTCG TC TTTGTG TCGCTG TTC GGGTGGGATATTGCTGCGCCGGAATCTCCAGTG] [+] EMBL BX619917 [ ACGAGCACTTCCCGAACTTCTACCACGCGGCCACGATGGATCACGGCTACTGGACGACGCCCGAGTTCGACTGCAAGGGCTACGTGAAGAAGTGGCTCATAACGTACGCGGTGCCGTTCTTCGGCTGGGACAGCCTGAAGGCGAAGCTAGAATTCAAGGGAGTCGTTGCAGTTTCAATGAACATGCTCCAGCTGGATATCAACCAATGTCCGGATGATTATTACGAGCCGAATGCATTCAAAAACACTCACAAATGCGACGAGAAGTCTTCATACTGTGTCCCGATCCTGGGCCGCGGGTACGAAACGGGCGGCTATAAGTGCGAGTGCCTGCCAAGGGTTCGAGTATCCGTACGAGGATCTGATCACCTACTNATGACGGGCAGCTGGTCGAGGCCGAGTTCGAGANCCTCGTGAATGATNANGGAATCGCGGTTCGAGACTTNCANNTGCCGTCTGNNCCGGGGCNNCCGCCCTGCNGGGTCCGGTTTACCCTTCGTCGTTCTTTTGTGTTCNCTGTTTCGGGGTGGGA ] consensusID : consensus_6462#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 413 fasta sequence [GCCCCGCGTCGCGCGCCCATCGGCTCAGCGCCAGAATCGGCACCAGGAGGGTAGTCGTTGCAGTTTCAATGAACATGCTCCAAGGCTGGATATCAACCAATGTCCGGACTGATTATTACGAGCCGAATGCATTCAAAAACACTCACAAATGCGACGAGAAGTCTTCATACTGTGTCCCGATCCTGGGCCGCCGCGCGTACGAAACCGGGCGGCTATAAGGTGCGAGTGCCCTTGCAAAGGGGTTCGAGGTATCCCGTACGGAGGGATCTGAATTCACCGTACTATGGACGGGGCCAAGCTGGGTNCGCAGCGGCCCGCAGTTCCGGAGGAAACAATCCGGTNGGACATTGCACTANAGCGGAAACTCGCCCGGGGTATCGGAAGGACGGTTTTGCAAACGGTGGCCCGGTCTG] [+] EMBL BX466449 [GCCCCGCGTCGCGCGCCCATCGGCTCAGCGCCAGAATCGGCACCAGGAGGGTAGTCGTTGCAGTTTCAATGAACATGCTCCAAGGCTGGATATCAACCAATGTCCGGACTGATTATTACGAGCCGAATGCATTCAAAAACACTCACAAATGCGACGAGAAGTCTTCATACTGTGTCCCGATCCTGGGCCGCCGCGCGTACGAAACCGGGCGGCTATAAGGTGCGAGTGCCCTTGCAAAGGGGTTCGAGGTATCCCGTACGGAGGGATCTGAATTCACCGTACTATGGACGGGGCCAAGCTGGGTNCGCAGCGGCCCGCAGTTCCGGAGGAAACAATCCGGTNGGACATTGCACTANAGCGGAAACTCGCCCGGGGTATCGGAAGGACGGTTTTGCAAACGGTGGCCCGGTCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6462#0 GAGTACATCNTCCNCCGTTCTTCCGGCTGCTGAAGCAGCGGTGGGCCACCAACTTCGATT 60 consensus_6462#1 ------------------------------------------------------------ consensus_6462#2 ------------------------------------------------------------ consensus_6462#0 CGCTCGAGAAGTACTATCTGAAGATTCGGCTGCGCCACAACGAGACGGGCGAGTATG-CG 119 consensus_6462#1 ---------------------------------GCCA----GACNTCGGCACNTATGGCG 23 consensus_6462#2 ------------------------------------------------------------ consensus_6462#0 CAACGGTACGAGCACTTCCCGAACTTCTACCACGCGGCCACGATGGATCACGGCTACTGG 179 consensus_6462#1 CAACGGTACGAGCACTTCCCGAACTTCTACCACGCGGCCACGATGGATCACGGCTACTGG 83 consensus_6462#2 ------------------------------------------------------------ consensus_6462#0 ACGACGCCCGAGTTCGACTGCAAGGGCTACGTGAAGAAGTGGCTCATAACGTACGCGGTG 239 consensus_6462#1 ACGACGCCCGAGTTCGACTGCAAGGGCTACGTGAAGAAGTGGCTCATAACGTACGCGGTG 143 consensus_6462#2 ----------------------------------------------------GCCCCGCG 8 * * * * consensus_6462#0 CCGTTCTTCGGCTGGGACAGC-CTGAAGGCGAAGCTAGAATTCAAGGGAGTCGTTGCAGT 298 consensus_6462#1 CCGTTCTTCGGCTGGGACAGC-CTGAAGGCGAAGCTAGAATTCAAGGGAGTCGTTGCAGT 202 consensus_6462#2 TCGCGCGCCCATCGGCTCAGCGCCAGAATCGGCACCAGGA----GGGTAGTCGTTGCAGT 64 ** * * ** **** * * ** * ** * ** ************ consensus_6462#0 TTCAATGAACATGCTCCA--GCTGGATATCAACCAATGTCCGGA-TGATTATTACGAGCC 355 consensus_6462#1 TTCAATGAACATGCTCCA--GCTGGATATCAACCAATGTCCGGA-TGATTATTACGAGCC 259 consensus_6462#2 TTCAATGAACATGCTCCAAGGCTGGATATCAACCAATGTCCGGACTGATTATTACGAGCC 124 ****************** ************************ *************** consensus_6462#0 GAATGCATTCAAAAACACTCACAAATGCGACGAGAAGTCTTCATACTGTGTCCCGATCCT 415 consensus_6462#1 GAATGCATTCAAAAACACTCACAAATGCGACGAGAAGTCTTCATACTGTGTCCCGATCCT 319 consensus_6462#2 GAATGCATTCAAAAACACTCACAAATGCGACGAGAAGTCTTCATACTGTGTCCCGATCCT 184 ************************************************************ consensus_6462#0 GGGCCGCGG---GTACGAAAC-GGGCGGCTATAAG-TGCGAGTGCC--TGCAA--GGGTT 466 consensus_6462#1 GGGCCGCGG---GTACGAAAC-GGGCGGCTATAAG-TGCGAGTGCC--TGCAA--GGGTT 370 consensus_6462#2 GGGCCGCCGCGCGTACGAAACCGGGCGGCTATAAGGTGCGAGTGCCCTTGCAAAGGGGTT 244 ******* * ********* ************* ********** ***** ***** consensus_6462#0 CGAG-TATCC-GTACGA--GGATCTGA--TCACC-TACTATGACGGGCAGCTGGTCGAGG 519 consensus_6462#1 CGAG-TATCC-GTACGA--GGATCTGA--TCACC-TACTATGACGGGCAGCTGGTCGAGG 423 consensus_6462#2 CGAGGTATCCCGTACGGAGGGATCTGAATTCACCGTACTATGGACGGGGCCAAGCTGGGT 304 **** ***** ***** ******** ***** ******* ** * * * * consensus_6462#0 CCGAGTTCGAGAACA-TCGTGAATGATAAGGAATCGCGGTTCGAGACGNTCAAGTGCCGT 578 consensus_6462#1 CCGAGTTCGAGAACA-TCGTGAATGATAAGGAATCGCGGTTCGAGACGTTCAAGTGCCGT 482 consensus_6462#2 NCGCAGCGGCCCGCAGTTCCGGAGGAAACAATCCGGTNGGACATTGCACTANAGCGGAAA 364 ** * ** * * * ** * * * * * * ** * consensus_6462#0 CTGGCCGGGGCGGCCGCCCTGCAGGTGCAGTTTACCATCGTCGTCTTTGTGTCGCTGTTC 638 consensus_6462#1 CTGGCCGGGGCGGCCGCCCTGCAGGTGCAGTTTACCATCGTCGTCTTTGTGTCGCTGTTC 542 consensus_6462#2 CTCGCCCGGGGTATCG----GAAGGACGGTTTTGCAAACGGTGGCCCGGTCTG------- 413 ** *** *** ** * *** *** * * ** * * ** * consensus_6462#0 NGGTGG-ATA----------------------- 647 consensus_6462#1 GGGTGGGATATTGCTGCGCCGGAATCTCCAGTG 575 consensus_6462#2 --------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||