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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6463#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1047 fasta sequence
[TTTTTTTTCAGTTTTCATATATATATTTTTTTCAATATTCGTATATTTTTTATCATCACCAGTTTCTCTCCTCTCCGCTCTTCATTCACAAGTTATGTTCATGCGTGTGATCTGCCGCTTGCAATTTCTACATTTCTACGCACTGTTTCAATTACATCCTTCCGTTCTCGTTCTCTACCACGTGTGGCGATATACTTATCTTCTGTGCAACACTTTATATTATCAGGGGCAGGGGTTGTTACATTCGCTTTTTCCCTCTCTCGCTCTTTCTCCGTATATGCCAGCAGATTCTCTAATTCTCTCGTGTCGCTTGGTTCGTGTCGATTGACATGTCATATCTCATTACTACTACTATTCAAATCTGTTTTTTTGTTCTTACACGAAACTGTATGCAAATACTATATTTAATTTGTTTCTGGCCGTACTTT-CCCCGTGCGCGCACGAGTTCCTTAGCGAGCTCGGTTTTGTTGAGTGTGTTTCGTCTGTGGTTGTATTATGTTGTATCATCATCTTGTGCTCGTTTAGGGTTCTTAACATTGTAAACTTTGTTTCACCTGTTCACGACATGTTTTGTTTGCTTCACTTTCCCCCTTCTCTTAGTGTGTTAATAAGATATCTCTTTAGTTTGTCGATTAAATCAAAACATTTCATATGTTCAAGTTCCGATTCATGATCGCACTTTCCATCGCCCACCGCAGAGCGTGTGATTTTTGTATGGGGATTCTTAT-GGTAAATTTTGTTCATTTGACGAAACACGATGAAGACGACGATGATTAATGTAGCATTTTCTGTGTGAGTTTTTGGTGGTTTTGTCTGTTTAAAACATTCCCCTACATTTGTTGTACAACACACACATACATTGCTGTAATCTCAACAACAACCGTCACACCACACCGGAACTACGCACGGGGACTGGGGCTTTCCCTTTAAAGAATGCACTGTTGCACGTTCAAATCCTTTCGTATTTCACTAGGTATAAATACAGATCGGCCGTTTGTTGTACCATGCACGCGAATGTCAAGGTGTGCGCGTGTTATGAACGGCCGG]
[+] EMBL AGA280628 [TTTTTTTTCAGTTTTCATATATATATTTTTTTCAATATTCGTATATTTTTTATCATCACCAGTTTCTCTCCTCTCCGCTCTTCATTCACAAGTTATGTTCATGCGTGTGATCTGCCGCTTGCAATTTCTACATTTCTACGCACTGTTTCAATTACATCCTTCCGTTCTCGTTCTCTACCACGTGTGGCGATATACTTATCTTCTGTGCAACACTTTATATTATCAGGGGCAGGGGTTGTTACATTCGCTTTTTCCCTCTCTCGCTCTTTCTCCGTATATGCCAGCAGATTCTCTAATTCTCTCGTGTCGCTTGGTTCGTGTCGATTGACATGTCATATCTCATTACTACTACTATTCAAATCTGTTTTTTTGTTCTTACACGAAACTGTATGCAAATACTATATTTAATTTGTTTCTGGCCGTACTTT CCCCGTGGGCGCACGAGTTCCTTAGCGAGCTCGGTTTTGTTGAGTGTGTTTCGTCTG ]
[-] EMBL BX612693 [ ACACTTTATATTATCAGGGGCAGGGGTTTTTACATTCGCTTTTTCCCTCTCTCCCTCTTTCTCCATATATGCCAGCAGATTCTCTAATTCTCTCGTTTCGCTTGGTTCGTGTCGATTGACATGTCATATCTCATTACTACTACTATTCAAATCTGTTTTTTTGTTCTTACACGAAACTATATGCAAATACTATATTTAATTTGTTTCTGGCCGTACTTT CCCCGTGCGCACACGAGTTCCTTAGCGAGCTCGGTTTTGTTGAGTGTGTTTCTTCTGTGGTTGTATTATGTTGTATCATCATCTTGTGCTCGTTTAGGGTTCTTAACATTGTAAACTTTGTTTCACCTGTTCACGACATGTTTTGTTTGCTTCACTTTCCCCCTTCTCTTAGTGTGTTAATAAGATATCTCTTTAGTTTGTCGATTAAATCAAAACATTTCATATGTTCAAGTTCCGATTCATGATCGCACTTTCCATCGCCCACCGCAGAGCGTGTGATTTTTGTATGGGGATTCTTAT GGTAAATTTTGTTCATTTGACGAAACACGATGAAGACGACGA ]
[-] EMBL BM621694 [ TTTAATTTGTTTCTGGCCGTACTTTCCCCCGTGCGCGCACGAGTTCCTTAGCGAGCTCGGTTTTGTTGAGTGTGTTTCGTCTGTGGTTGTATTATCTTGTATCATCATCTTGTGCTCGTTTAGGGTTCTTAACATTTTAAACTTTGTTTCACCTGTTCACGACATGTTTTGCTAGCTTCACTTTCCCCTTTCTCTTAGTGTGTTAATAAGATATCTCTTTAGTTTGTCGATTAAATCAAAACATTTCATATGTTTAAGGTCCGATTCACGATCGCACTTTCCATCGCACACCGCAGAGCATGTGATTTTTGTATGGGGTTTCTTATAGGAAAATTTTGTTCATTTGACGAAACACGATGAAGATGTCGATGATTAATGTAGCATTTTCTGTGTGAGTTTTTGGTGGTTTTGTCTGTTTAAAACATTCCCCTACATTTGTTGTACAACACACACATACATTGCTGTAATCTCAACAACAACCGTCACACCACACCGGAACTACGCACGGGGACTGGGGCTTTCCCTTTAAAGAATGCACTGTTGCACGTTCAAATCCTTTCGTATTTCACTAGGTATAAATACAGATCGGCCGTTTGTTGTACCATGCACGCGAATGTCAAGGTGTGCGCGTGTTATGAACGGCCGG]
consensusID : consensus_6463#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 680 fasta sequence
[TGCGAANTCTGCTCGTGTCGCTTGGGTTCGNGTCGNATGGGACATGGTCATGATCTCATTACCTNACCTACTATTCGAATCTGGTTTTTTTGTTCTTACACGAAACTGTTATNNCAATACTATATTTGAATGTNGTTTCTGCCCGTACTTTCCCCGTGCGCGCACGAGTTCCTTAGCGAGCTCGGTTTTGTTGAGTGTGTTTCGTCTGTGGTTGTATTATGTTGTATCATCATCTTGTGCTCGTTTAGGGTTCTTAACATTGTAAACTTTGTTTCACCTGTTCACGACATGTTTTGTTTGCTTCACGTTTCCCCCTTCTCTTAGTGTGTTAATAAGATATCTCGTTTAGTTTGTCGATTGAATCAAAACATTTCATATGTTCAAGGTCCGATTCATGATCGCACTTTCCATCGCCCACCGCAGAGCGTGTGATTTTTGTATGGGGATTCTTATGGTAAATTTTGTTCATTTGACGAAACACGATGAAGACGACGATGATTAATGTAGCATTTTCTGTGTGAGTTTTTGGTGTTTTGTCTGTTTAAAACATTCCCCTACATTTGTTGTACAACACACATACATTGCTATAGTCTCAACAACAACCGTCACACCACACCGGAACNACGCACGGGGACTGGGNCTTTCTCTTTAAAGAATGCACTGTGCCCTCGTGCCGATTC]
[-] EMBL AL931193 [TGCGAANTCTGCTCGTGTCGCTTGGGTTCGNGTCGNATGGGACATGGTCATGATCTCATTACCTNACCTACTATTCGAATCTGGTTTTTTTGTTCTTACACGAAACTGTTATNNCAATACTATATTTGAATGTNGTTTCTGCCCGTACTTTCCCCGTGCGCGCACGAGTTCCTTAGCGAGCTCGGTTTTGTTGAGTGTGTTTCGTCTGTGGTTGTATTATGTTGTATCATCATCTTGTGCTCGTTTAGGGTTCTTAACATTGTAAACTTTGTTTCACCTGTTCACGACATGTTTTGTTTGCTTCACGTTTCCCCCTTCTCTTAGTGTGTTAATAAGATATCTCGTTTAGTTTGTCGATTGAATCAAAACATTTCATATGTTCAAGGTCCGATTCATGATCGCACTTTCCATCGCCCACCGCAGAGCGTGTGATTTTTGTATGGGGATTCTTATGGTAAATTTTGTTCATTTGACGAAACACGATGAAGACGACGATGATTAATGTAGCATTTTCTGTGTGAGTTTTTGGTGTTTTGTCTGTTTAAAACATTCCCCTACATTTGTTGTACAACACACATACATTGCTATAGTCTCAACAACAACCGTCACACCACACCGGAACNACGCACGGGGACTGGGNCTTTCTCTTTAAAGAATGCACTGTGCCCTCGTGCCGATTC]
consensusID : consensus_6463#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 390 fasta sequence
[TGTTTGCTTCACTTTCCCCCTTCTCTTAGTGTGTTAATAAGATATCTCTTTAGTTTGTCGATTAAATCAAAACATTTCATATGTTCAAGGTCCGATTCATGATCGCACTTTCCATCGCCCACCGCAGAGCGTGTGATTTTTGTATGGGGATTCTTATGGTAAATTTTGTTCATTTGACGAAACACGATGAAGACGACGATGATTAATGTAGCATTTTCTGTGTGAGTTTTTGGTGGTTTTGTCTGTTTAAAACATTCCCCTACATTTGTTGTACAACACACATACATTGCTATAGTCTCAACAACAACCGTCACACCACACCGGAACTACGCACGGGGACTGGGCTTTCTCTTTAAAGAATGCACTGTGCACGTTCAATCAACCTCGGGG]
[-] EMBL AL697401 [TGTTTGCTTCACTTTCCCCCTTCTCTTAGTGTGTTAATAAGATATCTCTTTAGTTTGTCGATTAAATCAAAACATTTCATATGTTCAAGGTCCGATTCATGATCGCACTTTCCATCGCCCACCGCAGAGCGTGTGATTTTTGTATGGGGATTCTTATGGTAAATTTTGTTCATTTGACGAAACACGATGAAGACGACGATGATTAATGTAGCATTTTCTGTGTGAGTTTTTGGTGGTTTTGTCTGTTTAAAACATTCCCCTACATTTGTTGTACAACACACATACATTGCTATAGTCTCAACAACAACCGTCACACCACACCGGAACTACGCACGGGGACTGGGCTTTCTCTTTAAAGAATGCACTGTGCACGTTCAATCAACCTCGGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6463#0 TTTTTTTTCAGTTTTCATATATATATTTTTTTCAATATTCGTATATTTTTTATCATCACC 60
consensus_6463#2 ------------------------------------------------------------
consensus_6463#1 ------------------------------------------------------------
consensus_6463#0 AGTTTCTCTCCTCTCCGCTCTTCATTCACAAGTTATGTTCATGCGTGTGATCTGCCGCTT 120
consensus_6463#2 ------------------------------------------------------------
consensus_6463#1 ------------------------------------------------------------
consensus_6463#0 GCAATTTCTACATTTCTACGCACTGTTTCAATTACATCCTTCCGTTCTCGTTCTCTACCA 180
consensus_6463#2 ------------------------------------------------------------
consensus_6463#1 ------------------------------------------------------------
consensus_6463#0 CGTGTGGCGATATACTTATCTTCTGTGCAACACTTTATATTATCAGGGGCAGGGGTTGTT 240
consensus_6463#2 ------------------------------------------------------------
consensus_6463#1 ------------------------------------------------------------
consensus_6463#0 ACATTCGCTTTTTCCCTCTCTCGCTCTTTCTCCGTATATGCCAGCAGATTCTCTAATTCT 300
consensus_6463#2 ------------------------------------------------------------
consensus_6463#1 -------------------------------------------------TGCGAANTCTG 11
consensus_6463#0 CTCGTGTCGCTTGG-TTCGTGTCGATTGACATGTCAT----ATCTCATTACTAC---TAC 352
consensus_6463#2 ------------------------------------------------------------
consensus_6463#1 CTCGTGTCGCTTGGGTTCGNGTCGNATGGGACATGGTCATGATCTCATTACCTNACCTAC 71
consensus_6463#0 TATTCAAATCTG-TTTTTTTGTTCTTACACGAAACTGT-ATGCAAATACTATATTTAATT 410
consensus_6463#2 ------------------------------------------------------------
consensus_6463#1 TATTCGAATCTGGTTTTTTTGTTCTTACACGAAACTGTTATNNCAATACTATATTTGAAT 131
consensus_6463#0 --TGTTTCTGGCCGTACTTTCCCCGTGCGCGCACGAGTTCCTTAGCGAGCTCGGTTTTGT 468
consensus_6463#2 ------------------------------------------------------------
consensus_6463#1 GTNGTTTCTGCCCGTACTTTCCCCGTGCGCGCACGAGTTCCTTAGCGAGCTCGGTTTTGT 191
consensus_6463#0 TGAGTGTGTTTCGTCTGTGGTTGTATTATGTTGTATCATCATCTTGTGCTCGTTTAGGGT 528
consensus_6463#2 ------------------------------------------------------------
consensus_6463#1 TGAGTGTGTTTCGTCTGTGGTTGTATTATGTTGTATCATCATCTTGTGCTCGTTTAGGGT 251
consensus_6463#0 TCTTAACATTGTAAACTTTGTTTCACCTGTTCACGACATGTTTTGTTTGCTTCAC-TTTC 587
consensus_6463#2 -------------------------------------------TGTTTGCTTCAC-TTTC 16
consensus_6463#1 TCTTAACATTGTAAACTTTGTTTCACCTGTTCACGACATGTTTTGTTTGCTTCACGTTTC 311
************ ****
consensus_6463#0 CCCCTTCTCTTAGTGTGTTAATAAGATATCTC-TTTAGTTTGTCGATTAAATCAAAACAT 646
consensus_6463#2 CCCCTTCTCTTAGTGTGTTAATAAGATATCTC-TTTAGTTTGTCGATTAAATCAAAACAT 75
consensus_6463#1 CCCCTTCTCTTAGTGTGTTAATAAGATATCTCGTTTAGTTTGTCGATTGAATCAAAACAT 371
******************************** *************** ***********
consensus_6463#0 TTCATATGTTCAAGTTCCGATTCATGATCGCACTTTCCATCGCCCACCGCAGAGCGTGTG 706
consensus_6463#2 TTCATATGTTCAAGGTCCGATTCATGATCGCACTTTCCATCGCCCACCGCAGAGCGTGTG 135
consensus_6463#1 TTCATATGTTCAAGGTCCGATTCATGATCGCACTTTCCATCGCCCACCGCAGAGCGTGTG 431
************** *********************************************
consensus_6463#0 ATTTTTGTATGGGGATTCTTATGGTAAATTTTGTTCATTTGACGAAACACGATGAAGACG 766
consensus_6463#2 ATTTTTGTATGGGGATTCTTATGGTAAATTTTGTTCATTTGACGAAACACGATGAAGACG 195
consensus_6463#1 ATTTTTGTATGGGGATTCTTATGGTAAATTTTGTTCATTTGACGAAACACGATGAAGACG 491
************************************************************
consensus_6463#0 ACGATGATTAATGTAGCATTTTCTGTGTGAGTTTTTGGTGGTTTTGTCTGTTTAAAACAT 826
consensus_6463#2 ACGATGATTAATGTAGCATTTTCTGTGTGAGTTTTTGGTGGTTTTGTCTGTTTAAAACAT 255
consensus_6463#1 ACGATGATTAATGTAGCATTTTCTGTGTGAGTTTTTGGTG-TTTTGTCTGTTTAAAACAT 550
**************************************** *******************
consensus_6463#0 TCCCCTACATTTGTTGTACAACACACACATACATTGCTGTAATCTCAACAACAACCGTCA 886
consensus_6463#2 TCCCCTACATTTGTTGTACAACACAC--ATACATTGCTATAGTCTCAACAACAACCGTCA 313
consensus_6463#1 TCCCCTACATTTGTTGTACAACACAC--ATACATTGCTATAGTCTCAACAACAACCGTCA 608
************************** ********** ** ******************
consensus_6463#0 CACCACACCGGAACTACGCACGGGGACTGGGGCTTTCCCTTTAAAGAATGCACTGTTGCA 946
consensus_6463#2 CACCACACCGGAACTACGCACGGGGACTGGG-CTTTCTCTTTAAAGAATGCACTGT-GCA 371
consensus_6463#1 CACCACACCGGAACNACGCACGGGGACTGGGNCTTTCTCTTTAAAGAATGCACTGT---G 665
************** **************** ***** ******************
consensus_6463#0 CGTTCAAATCCTTTCGTATTTCACTAGGTATAAATACAGATCGGCCGTTTGTTGTACCAT 1006
consensus_6463#2 CGTTCAATCAACCTCGGGG----------------------------------------- 390
consensus_6463#1 CCCTCGTGCCGATTC--------------------------------------------- 680
* ** **
consensus_6463#0 GCACGCGAATGTCAAGGTGTGCGCGTGTTATGAACGGCCGG 1047
consensus_6463#2 -----------------------------------------
consensus_6463#1 -----------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||