cluster # 6470

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Anopheles gambiae
cluster # 6470 cluster # 6470 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6470#0 length = 708 sequences # 2

consensus_6470#1 length = 513 sequences # 2
consensus_6470#2 length = 428 sequences # 1

consensusID : consensus_6470#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 708
fasta sequence

                              [CAGAATCGCCACGAGGTCTGAAATCTCTGGCCAGTACGAAACCGACCGTAAACGAGGATGACATGAAGAAGCTGGACAAATTTACCGAGGACTTTGGCCAAGAGGGTTAGGCGATTCGAAAAACAGAAGATATTCGACTGTGTGTGTGTGTGTATTTGTGTGGAAGAGATGGACACAGGGAGAGGGAGAGAGAGAGAGGGGGGGAGGGGAGGAAAAGCATTAGATAGAAAGGATTTATTGTCTCTTTCAAGGTGAGCGCGCGAACGGGTTAGAGATTGTGGCAGCAAGGTCTAAAGTCAGTTGTAACACAAGGAAAGGCGCGCAGGCAAAGGCGTACGTGTGAGTGGTGGGTGTGTATCTGCGTTTGTGTATGTGTGTGTGTGTAGCGAGGCACCGGGGGGGATAGCGGGACAAGGGACGAAAGGCAAAACACAACATACATCATCCATCACGCAAACACTGGATTTATGCAAACGATTACTTTAACAATATTCTTCGTTAGAAGCAAACACCACTACACTCAAGCTGCAAATACACAGGCCACACACACACACACACGTGCGCGTGCGGGAGGAAGCATAAAGTGGAGAGAAGAGGAACAAAAGTAATTAAAACTCTAACACTATCGACTCTATATACATGTATGGAAACAAACAAAAAATCCCGTTGATCTATGTATCATCATTTCAAAATAATGCCTTGCCGTGT]

[+] EMBL BX468749             [CAGAATCGCCACGAGGTCTGAAATCTCTGGCCAGTACGAAACCGACCGTAAACGAGGATGACATGAAGAAGCTGGACAAATTTACCGAGGACTTTGGCCAAGAGGGTTAGGCGATTCGAAAAACAGAAGATATTCGACTGTGTGTGTGTGTGTATTTGTGTGGAAGAGATGGACACAGGGAGAGGGAGAGAGAGAGAGGGGGGGAGGGGAGGAAAAGCATTAGATAGAAAGGATTTATTGTCTCTTTCAAGGTGAGCGCGCGAACGGGTTAGAGATTGTGGCAGCAAGGTCTAAAGTCAGTTGTAACACAAGGAAAGGCGCGCAGGCAAAGGCGTACGTGTGAGTGGTGGGTGTGTATCTGCGTTTGTGTATGTGTGTGTGTGTAGCGAGGCACCGGGGGGGATAGCGGGACAAGGGACGAAAGGCAAAACACAACATACATCATCCATCACGCAAACACTGGATTTATGCAAACGATTACTTTAACAATATTCTTCGTTAGAAGCAAACACCACTACACTCAAGCTGCAAATACACAGGCCAC                                                                                                                                                                    ]
[-] EMBL AGA282576            [                                                                                                                                                                                                                                                                                                                                            CGAACGTGTGAGTGGTGGATGTGTATCTGCGTTTGTGTATGTGTGTGTGTGTAGCGAGGCATC GGGGGGATAGC GGACAAGGGACGAAAGGCTAAACACAACATACATCATCCATCACGCAAACACTGGATTTATGCAAACGATTA TTTAA AATATTCTTCGTTAGAAGCAAACACCACTACACTCAA CTGCAAATACACA ACCACACACACACACACACGTGCGCGTGCGGGAGGAAGCATAAAGTGGAGAGAAGAGGAACAAAAGTAATTAAAACTCTAACACTATCGACTCTATATACATGTATGGAAACAAACAAAAAATCCCGTTGATCTATGTATCATCATTTCAAAATAATGCCTTGCCGTGT]




>consensus_6470#0
CAGAATCGCCACGAGGTCTGAAATCTCTGGCCAGTACGAAACCGACCGTAAACGAGGATG
ACATGAAGAAGCTGGACAAATTTACCGAGGACTTTGGCCAAGAGGGTTAGGCGATTCGAA
AAACAGAAGATATTCGACTGTGTGTGTGTGTGTATTTGTGTGGAAGAGATGGACACAGGG
AGAGGGAGAGAGAGAGAGGGGGGGAGGGGAGGAAAAGCATTAGATAGAAAGGATTTATTG
TCTCTTTCAAGGTGAGCGCGCGAACGGGTTAGAGATTGTGGCAGCAAGGTCTAAAGTCAG
TTGTAACACAAGGAAAGGCGCGCAGGCAAAGGCGTACGTGTGAGTGGTGGGTGTGTATCT
GCGTTTGTGTATGTGTGTGTGTGTAGCGAGGCACCGGGGGGGATAGCGGGACAAGGGACG
AAAGGCAAAACACAACATACATCATCCATCACGCAAACACTGGATTTATGCAAACGATTA
CTTTAACAATATTCTTCGTTAGAAGCAAACACCACTACACTCAAGCTGCAAATACACAGG
CCACACACACACACACACGTGCGCGTGCGGGAGGAAGCATAAAGTGGAGAGAAGAGGAAC
AAAAGTAATTAAAACTCTAACACTATCGACTCTATATACATGTATGGAAACAAACAAAAA
ATCCCGTTGATCTATGTATCATCATTTCAAAATAATGCCTTGCCGTGT

consensusID : consensus_6470#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 513
fasta sequence

                              [CCGGGACGAGCACGCCCGGCTAGTCATGTTCAAGATCCATCTCGGCAACACGGCCCACACGCTGACCGAGGACAATCTGCGCACGCTCGCGAGCAAAACGGACGGCTTCTCCGGCTCGGACATCTCGATCGTGGTGCGGGACGCGCTGATGCAGCCGGTGCGCAAGGTGCAGACGGCGACCCATTTCAAGAAGGTGAGCGGCCCGTCGCCGGTGGACAAGACGACGATCTGTGACGATCTGCTGGTACCGTGCAGTCCGGGCGATCCGGGCGCGATCGAGATGACGTGGGTGGACCTGCCGGGCGACAAGCTGTTCGAGCCGCCCGTAACGATGAACGACATGCTGAAATCTCTGGCCAGTACGAAACCGACCGTAAACGAGGATGACATGAAGAAGCTGGACAAATTTACCGAGGACTTTGGCCAAGAGGGTTAGGCAGGCGATTCGAAAAACAGAAGATATTCGACTGTGTGTGTGTGTGTATTTGTGTGGAAGAGATGGACACAGGGAGA]

[+] EMBL BM616454             [CCGGGACGAGCACGCCCGGCTAGTCATGTTCAAGATCCATCTCGGCAACACGGCCCACACGCTGACCGAGGACAATCTGCGCACGCTCGCGAGCAAAACGGACGGCTTCTCCGGCTCGGACATCTCGATCGTGGTGCGGGACGCGCTGATGCAGCCGGTGCGCAAGGTGCAGACGGCGACCCATTTCAAGAAGGTGAGCGGCCCGTCGCCGGTGGACAAGACGACGATCTGTGACGATCTGCTGGTACCGTGCAGTCCGGGCGATCCGGGCGCGATCGAGATGACGTGGGTGGACCTGCCGGGCGACAAGCTGTTCGAGCCGCCCGTAACGATGAACGACATGCTGAAATCTCTGGCCAGTACGAAACCGACCGTAAACGAGGATGACATGAAGAAGCTGGACAAATTTACCGAGGACTTTGGCCAAGAGGGTTAGGCAGGCGATTCGAAAAACAGAAGATATTCGACTGTGTGTGTGTGT                                ]
[+] EMBL BX618563             [                                        CTCGGCAACACGGCCCACACGCTGACCGAGGACAATCTGCGCACGCTCGCGAGCAAAACGGACGGCTTCTCCGGCTCGGACATCTCGATCGTGGGGCGGGACGCGCTGATGCAGCCGGGGCGCAAGGGGCAGACGGCGACCCATTTCAAGAAGGTGAGCGGCCCGTCGCCGGTGGACAAGACGACGATCTGTGACGATCTGCTGGTACCGTGCAGTCCGGGCGATCCGGGCGCGATCGAGATGACGTGGGTGGACCTGCCGGGCGACAAGCTGTTCGAGCCGCCCGTAACGATGAACGACATGCTGAAATCTCTGGCCAGTACGAAACCGACCGTAAACGAGGATGACATGAAGAAGCTGGACAAATTTACCGAGGACTTTGGCCAAGAGGGTTAGGCAGGCGATTCGAAAAACAGAAGATATTCGACTGTGTGTGTGTGTGTATTTGTGTGGAAGAGATGGACACAGGGAGA]




>consensus_6470#1
CCGGGACGAGCACGCCCGGCTAGTCATGTTCAAGATCCATCTCGGCAACACGGCCCACAC
GCTGACCGAGGACAATCTGCGCACGCTCGCGAGCAAAACGGACGGCTTCTCCGGCTCGGA
CATCTCGATCGTGGTGCGGGACGCGCTGATGCAGCCGGTGCGCAAGGTGCAGACGGCGAC
CCATTTCAAGAAGGTGAGCGGCCCGTCGCCGGTGGACAAGACGACGATCTGTGACGATCT
GCTGGTACCGTGCAGTCCGGGCGATCCGGGCGCGATCGAGATGACGTGGGTGGACCTGCC
GGGCGACAAGCTGTTCGAGCCGCCCGTAACGATGAACGACATGCTGAAATCTCTGGCCAG
TACGAAACCGACCGTAAACGAGGATGACATGAAGAAGCTGGACAAATTTACCGAGGACTT
TGGCCAAGAGGGTTAGGCAGGCGATTCGAAAAACAGAAGATATTCGACTGTGTGTGTGTG
TGTATTTGTGTGGAAGAGATGGACACAGGGAGA

consensusID : consensus_6470#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 428
fasta sequence

                              [CCGCCCACGCGTCCGAAAGGATTTATTGTCTCTTTCAAGGTGAGCGCGCGAACGGGTTAGAGATTGTGGCAGCAAAGTCTAAAGTCAGTTGTAGCGCAAGGAAAGGCGCGCAGGCAAAGCGTACGTGTGAGTGGTGGATGTGTATCTGCGTTTGTGTATGTGTGTGTGTGTAGCGAGGCATCGGGGGGATAGCGGACAAGGGACGAAAGGCTAAACACAACATACATCATCCATCACGCAAACACTGGATTTATGCAAACGATTATTTAAAATATTCTTCGTTAGAAGCAAACACCACTACACTCAACTGCAAATACACAACCACACACACACACACACGTGCGCGTGCGGGAGGAAGCATAAAGTGGAGAGAAGAGGAACAAAAGTAATTAAAACTCTAACACTATCGACTCTATATACATGTATGG]

[+] EMBL BM594650             [CCGCCCACGCGTCCGAAAGGATTTATTGTCTCTTTCAAGGTGAGCGCGCGAACGGGTTAGAGATTGTGGCAGCAAAGTCTAAAGTCAGTTGTAGCGCAAGGAAAGGCGCGCAGGCAAAGCGTACGTGTGAGTGGTGGATGTGTATCTGCGTTTGTGTATGTGTGTGTGTGTAGCGAGGCATCGGGGGGATAGCGGACAAGGGACGAAAGGCTAAACACAACATACATCATCCATCACGCAAACACTGGATTTATGCAAACGATTATTTAAAATATTCTTCGTTAGAAGCAAACACCACTACACTCAACTGCAAATACACAACCACACACACACACACACGTGCGCGTGCGGGAGGAAGCATAAAGTGGAGAGAAGAGGAACAAAAGTAATTAAAACTCTAACACTATCGACTCTATATACATGTATGG]




>consensus_6470#2
CCGCCCACGCGTCCGAAAGGATTTATTGTCTCTTTCAAGGTGAGCGCGCGAACGGGTTAG
AGATTGTGGCAGCAAAGTCTAAAGTCAGTTGTAGCGCAAGGAAAGGCGCGCAGGCAAAGC
GTACGTGTGAGTGGTGGATGTGTATCTGCGTTTGTGTATGTGTGTGTGTGTAGCGAGGCA
TCGGGGGGATAGCGGACAAGGGACGAAAGGCTAAACACAACATACATCATCCATCACGCA
AACACTGGATTTATGCAAACGATTATTTAAAATATTCTTCGTTAGAAGCAAACACCACTA
CACTCAACTGCAAATACACAACCACACACACACACACACGTGCGCGTGCGGGAGGAAGCA
TAAAGTGGAGAGAAGAGGAACAAAAGTAATTAAAACTCTAACACTATCGACTCTATATAC
ATGTATGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6470#0      CAGAATCGCCACGAGGTCTGAAATCTCTGGCCAGTACGAAACCGACCGTAAACGAGGATG 60
consensus_6470#2      ------------------------------------------------------------
consensus_6470#1      ------------------------------------------------------------
                                                                                  

consensus_6470#0      ACATGAAGAAGCTGGACAAATTTACCGAGGACTTTGGCCAAGAGGGTTAGGCGATTCGAA 120
consensus_6470#2      ------------------------------------------------------------
consensus_6470#1      ------------------------------------------------------------
                                                                                  

consensus_6470#0      AAACAGAAGATATTCGACTGTGTGTGTGTGTGTATTTGTGTGGAAGAGATGGACACAGGG 180
consensus_6470#2      ------------------------------------------------------------
consensus_6470#1      --------------------------------------CCGGGACGAGCACGCCCGGCTA 22
                                                                                  

consensus_6470#0      AGAGGGAGAGAGAGAGAGGGGGGGAGGGGAGGAAAAGCATTAGATAGAAAGGATTTATTG 240
consensus_6470#2      --------------------------------CCGCCCACGCGTCCGAAAGGATTTATTG 28
consensus_6470#1      GTCATGTTCAAGATCCATCTCGGCAACACGGCCCACACGCTGACCGAGGACAATCTGCGC 82
                                                           *           *  ** *    

consensus_6470#0      TCTCTTTCAAGGTGAGCGCGCGAA-----CGGGTTAGAGATTGTGGCAGCAAGGTCTAAA 295
consensus_6470#2      TCTCTTTCAAGGTGAGCGCGCGAA-----CGGGTTAGAGATTGTGGCAGCAAAGTCTAAA 83
consensus_6470#1      ACGCTCGCGAGCAAAACGGACGGCTTCTCCGGCTCGGACATCTCGATCGTGGTGCGGGAC 142
                       * **  * **   * **  **       *** *  ** **   *   *    *    * 

consensus_6470#0      GT-CAGTTGTAACACAAGGAAAGGCGCGCAGGCAAAGGCGTACGTGTGAGTGGTGGGTG- 353
consensus_6470#2      GT-CAGTTGTAGCGCAAGGAAAGGCGCGCAGGCAAAG-CGTACGTGTGAGTGGTGGATG- 140
consensus_6470#1      GCGCTGATGCAGC-CGGTGCGCAAGGTGCAGACGGCGACCCATTTCAAGAAGGTGAGCGG 201
                      *  * * ** * * *   *      * **** *   * *  *  *      ****   * 

consensus_6470#0      TGTATCTGCGTTTGTGTATGTGTGTGTGTGTAGCGA------GGCACCGGGGGGGATAGC 407
consensus_6470#2      TGTATCTGCGTTTGTGTATGTGTGTGTGTGTAGCGA------GGCATCGGGGGG-ATAGC 193
consensus_6470#1      CCCGTCGCCGGTGGACAAGACGACGATCTGTGACGATCTGCTGGTACCGTGCAGTCCGGG 261
                          **  ** * *   *   *    * ***  ***      ** * ** *  *    * 

consensus_6470#0      GGGACAAGGGACGAAAGGCAAAACACAACATACATCATCCATCACGCAAAC-ACTGGATT 466
consensus_6470#2      GG-ACAAGGGACGAAAGGCTAAACACAACATACATCATCCATCACGCAAAC-ACTGGATT 251
consensus_6470#1      CGATCCGGGCGCGATCGAGATGACGTGG-GTGGACCTGCCGGGCGACAAGCTGTTCGAGC 320
                       *  *  **  ***  *     **      *  * *  **      *** *   * **  

consensus_6470#0      TATGCA-AACGATTACTTTAACA---ATATTCTTCGTTAGAAGCAAACACCACTACACTC 522
consensus_6470#2      TATGCA-AACGATTATTTAAA-----ATATTCTTCGTTAGAAGCAAACACCACTACACTC 305
consensus_6470#1      CGCCCGTAACGATGAACGACATGCTGAAATCTCTGGCCAGTACGAAAC-CGACCGTAAAC 379
                          *  ****** *     *     * **   * *  ** *  **** * **   *  *

consensus_6470#0      AAGCTGCAAATACACAGGCCACACACACACACACACGTGCGCGTGCGGGAGGAAGCATAA 582
consensus_6470#2      AA-CTGCAAATACACAA-CCACACACACACACACACGTGCGCGTGCGGGAGGAAGCATAA 363
consensus_6470#1      GAGGATGACATGAAGAAGCTGGACAAATTTAC---CGAGGACTTTGGCCAAGAGGGTTAG 436
                       *     * **  * *  *   *** *   **   ** *  * *  *  * ** *  ** 

consensus_6470#0      AGTGGAGAGAAGAGGAACAAAAGTAATTAAAACTCTAACACTATCGACTCTATATACATG 642
consensus_6470#2      AGTGGAGAGAAGAGGAACAAAAGTAATTAAAACTCTAACACTATCGACTCTATATACATG 423
consensus_6470#1      GCAGGCGATTCGAAAAACAGAAGATATTCGACTGTGTGTGTGTGTGTATTTGTGTGGAAG 496
                         ** **   **  **** ***  ***  *              *  * * * *  * *

consensus_6470#0      T-ATGGAAACAAACAAAAAATCCCGTTGATCTATGTATCATCATTTCAAAATAATGCCTT 701
consensus_6470#2      T-ATGG------------------------------------------------------ 428
consensus_6470#1      AGATGGACACAGGGAGA------------------------------------------- 513
                        ****                                                      

consensus_6470#0      GCCGTGT 708
consensus_6470#2      -------
consensus_6470#1      -------