These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6470#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 708 fasta sequence [CAGAATCGCCACGAGGTCTGAAATCTCTGGCCAGTACGAAACCGACCGTAAACGAGGATGACATGAAGAAGCTGGACAAATTTACCGAGGACTTTGGCCAAGAGGGTTAGGCGATTCGAAAAACAGAAGATATTCGACTGTGTGTGTGTGTGTATTTGTGTGGAAGAGATGGACACAGGGAGAGGGAGAGAGAGAGAGGGGGGGAGGGGAGGAAAAGCATTAGATAGAAAGGATTTATTGTCTCTTTCAAGGTGAGCGCGCGAACGGGTTAGAGATTGTGGCAGCAAGGTCTAAAGTCAGTTGTAACACAAGGAAAGGCGCGCAGGCAAAGGCGTACGTGTGAGTGGTGGGTGTGTATCTGCGTTTGTGTATGTGTGTGTGTGTAGCGAGGCACCGGGGGGGATAGCGGGACAAGGGACGAAAGGCAAAACACAACATACATCATCCATCACGCAAACACTGGATTTATGCAAACGATTACTTTAACAATATTCTTCGTTAGAAGCAAACACCACTACACTCAAGCTGCAAATACACAGGCCACACACACACACACACGTGCGCGTGCGGGAGGAAGCATAAAGTGGAGAGAAGAGGAACAAAAGTAATTAAAACTCTAACACTATCGACTCTATATACATGTATGGAAACAAACAAAAAATCCCGTTGATCTATGTATCATCATTTCAAAATAATGCCTTGCCGTGT] [+] EMBL BX468749 [CAGAATCGCCACGAGGTCTGAAATCTCTGGCCAGTACGAAACCGACCGTAAACGAGGATGACATGAAGAAGCTGGACAAATTTACCGAGGACTTTGGCCAAGAGGGTTAGGCGATTCGAAAAACAGAAGATATTCGACTGTGTGTGTGTGTGTATTTGTGTGGAAGAGATGGACACAGGGAGAGGGAGAGAGAGAGAGGGGGGGAGGGGAGGAAAAGCATTAGATAGAAAGGATTTATTGTCTCTTTCAAGGTGAGCGCGCGAACGGGTTAGAGATTGTGGCAGCAAGGTCTAAAGTCAGTTGTAACACAAGGAAAGGCGCGCAGGCAAAGGCGTACGTGTGAGTGGTGGGTGTGTATCTGCGTTTGTGTATGTGTGTGTGTGTAGCGAGGCACCGGGGGGGATAGCGGGACAAGGGACGAAAGGCAAAACACAACATACATCATCCATCACGCAAACACTGGATTTATGCAAACGATTACTTTAACAATATTCTTCGTTAGAAGCAAACACCACTACACTCAAGCTGCAAATACACAGGCCAC ] [-] EMBL AGA282576 [ CGAACGTGTGAGTGGTGGATGTGTATCTGCGTTTGTGTATGTGTGTGTGTGTAGCGAGGCATC GGGGGGATAGC GGACAAGGGACGAAAGGCTAAACACAACATACATCATCCATCACGCAAACACTGGATTTATGCAAACGATTA TTTAA AATATTCTTCGTTAGAAGCAAACACCACTACACTCAA CTGCAAATACACA ACCACACACACACACACACGTGCGCGTGCGGGAGGAAGCATAAAGTGGAGAGAAGAGGAACAAAAGTAATTAAAACTCTAACACTATCGACTCTATATACATGTATGGAAACAAACAAAAAATCCCGTTGATCTATGTATCATCATTTCAAAATAATGCCTTGCCGTGT] consensusID : consensus_6470#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 513 fasta sequence [CCGGGACGAGCACGCCCGGCTAGTCATGTTCAAGATCCATCTCGGCAACACGGCCCACACGCTGACCGAGGACAATCTGCGCACGCTCGCGAGCAAAACGGACGGCTTCTCCGGCTCGGACATCTCGATCGTGGTGCGGGACGCGCTGATGCAGCCGGTGCGCAAGGTGCAGACGGCGACCCATTTCAAGAAGGTGAGCGGCCCGTCGCCGGTGGACAAGACGACGATCTGTGACGATCTGCTGGTACCGTGCAGTCCGGGCGATCCGGGCGCGATCGAGATGACGTGGGTGGACCTGCCGGGCGACAAGCTGTTCGAGCCGCCCGTAACGATGAACGACATGCTGAAATCTCTGGCCAGTACGAAACCGACCGTAAACGAGGATGACATGAAGAAGCTGGACAAATTTACCGAGGACTTTGGCCAAGAGGGTTAGGCAGGCGATTCGAAAAACAGAAGATATTCGACTGTGTGTGTGTGTGTATTTGTGTGGAAGAGATGGACACAGGGAGA] [+] EMBL BM616454 [CCGGGACGAGCACGCCCGGCTAGTCATGTTCAAGATCCATCTCGGCAACACGGCCCACACGCTGACCGAGGACAATCTGCGCACGCTCGCGAGCAAAACGGACGGCTTCTCCGGCTCGGACATCTCGATCGTGGTGCGGGACGCGCTGATGCAGCCGGTGCGCAAGGTGCAGACGGCGACCCATTTCAAGAAGGTGAGCGGCCCGTCGCCGGTGGACAAGACGACGATCTGTGACGATCTGCTGGTACCGTGCAGTCCGGGCGATCCGGGCGCGATCGAGATGACGTGGGTGGACCTGCCGGGCGACAAGCTGTTCGAGCCGCCCGTAACGATGAACGACATGCTGAAATCTCTGGCCAGTACGAAACCGACCGTAAACGAGGATGACATGAAGAAGCTGGACAAATTTACCGAGGACTTTGGCCAAGAGGGTTAGGCAGGCGATTCGAAAAACAGAAGATATTCGACTGTGTGTGTGTGT ] [+] EMBL BX618563 [ CTCGGCAACACGGCCCACACGCTGACCGAGGACAATCTGCGCACGCTCGCGAGCAAAACGGACGGCTTCTCCGGCTCGGACATCTCGATCGTGGGGCGGGACGCGCTGATGCAGCCGGGGCGCAAGGGGCAGACGGCGACCCATTTCAAGAAGGTGAGCGGCCCGTCGCCGGTGGACAAGACGACGATCTGTGACGATCTGCTGGTACCGTGCAGTCCGGGCGATCCGGGCGCGATCGAGATGACGTGGGTGGACCTGCCGGGCGACAAGCTGTTCGAGCCGCCCGTAACGATGAACGACATGCTGAAATCTCTGGCCAGTACGAAACCGACCGTAAACGAGGATGACATGAAGAAGCTGGACAAATTTACCGAGGACTTTGGCCAAGAGGGTTAGGCAGGCGATTCGAAAAACAGAAGATATTCGACTGTGTGTGTGTGTGTATTTGTGTGGAAGAGATGGACACAGGGAGA] consensusID : consensus_6470#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 428 fasta sequence [CCGCCCACGCGTCCGAAAGGATTTATTGTCTCTTTCAAGGTGAGCGCGCGAACGGGTTAGAGATTGTGGCAGCAAAGTCTAAAGTCAGTTGTAGCGCAAGGAAAGGCGCGCAGGCAAAGCGTACGTGTGAGTGGTGGATGTGTATCTGCGTTTGTGTATGTGTGTGTGTGTAGCGAGGCATCGGGGGGATAGCGGACAAGGGACGAAAGGCTAAACACAACATACATCATCCATCACGCAAACACTGGATTTATGCAAACGATTATTTAAAATATTCTTCGTTAGAAGCAAACACCACTACACTCAACTGCAAATACACAACCACACACACACACACACGTGCGCGTGCGGGAGGAAGCATAAAGTGGAGAGAAGAGGAACAAAAGTAATTAAAACTCTAACACTATCGACTCTATATACATGTATGG] [+] EMBL BM594650 [CCGCCCACGCGTCCGAAAGGATTTATTGTCTCTTTCAAGGTGAGCGCGCGAACGGGTTAGAGATTGTGGCAGCAAAGTCTAAAGTCAGTTGTAGCGCAAGGAAAGGCGCGCAGGCAAAGCGTACGTGTGAGTGGTGGATGTGTATCTGCGTTTGTGTATGTGTGTGTGTGTAGCGAGGCATCGGGGGGATAGCGGACAAGGGACGAAAGGCTAAACACAACATACATCATCCATCACGCAAACACTGGATTTATGCAAACGATTATTTAAAATATTCTTCGTTAGAAGCAAACACCACTACACTCAACTGCAAATACACAACCACACACACACACACACGTGCGCGTGCGGGAGGAAGCATAAAGTGGAGAGAAGAGGAACAAAAGTAATTAAAACTCTAACACTATCGACTCTATATACATGTATGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6470#0 CAGAATCGCCACGAGGTCTGAAATCTCTGGCCAGTACGAAACCGACCGTAAACGAGGATG 60 consensus_6470#2 ------------------------------------------------------------ consensus_6470#1 ------------------------------------------------------------ consensus_6470#0 ACATGAAGAAGCTGGACAAATTTACCGAGGACTTTGGCCAAGAGGGTTAGGCGATTCGAA 120 consensus_6470#2 ------------------------------------------------------------ consensus_6470#1 ------------------------------------------------------------ consensus_6470#0 AAACAGAAGATATTCGACTGTGTGTGTGTGTGTATTTGTGTGGAAGAGATGGACACAGGG 180 consensus_6470#2 ------------------------------------------------------------ consensus_6470#1 --------------------------------------CCGGGACGAGCACGCCCGGCTA 22 consensus_6470#0 AGAGGGAGAGAGAGAGAGGGGGGGAGGGGAGGAAAAGCATTAGATAGAAAGGATTTATTG 240 consensus_6470#2 --------------------------------CCGCCCACGCGTCCGAAAGGATTTATTG 28 consensus_6470#1 GTCATGTTCAAGATCCATCTCGGCAACACGGCCCACACGCTGACCGAGGACAATCTGCGC 82 * * ** * consensus_6470#0 TCTCTTTCAAGGTGAGCGCGCGAA-----CGGGTTAGAGATTGTGGCAGCAAGGTCTAAA 295 consensus_6470#2 TCTCTTTCAAGGTGAGCGCGCGAA-----CGGGTTAGAGATTGTGGCAGCAAAGTCTAAA 83 consensus_6470#1 ACGCTCGCGAGCAAAACGGACGGCTTCTCCGGCTCGGACATCTCGATCGTGGTGCGGGAC 142 * ** * ** * ** ** *** * ** ** * * * * consensus_6470#0 GT-CAGTTGTAACACAAGGAAAGGCGCGCAGGCAAAGGCGTACGTGTGAGTGGTGGGTG- 353 consensus_6470#2 GT-CAGTTGTAGCGCAAGGAAAGGCGCGCAGGCAAAG-CGTACGTGTGAGTGGTGGATG- 140 consensus_6470#1 GCGCTGATGCAGC-CGGTGCGCAAGGTGCAGACGGCGACCCATTTCAAGAAGGTGAGCGG 201 * * * ** * * * * * **** * * * * * **** * consensus_6470#0 TGTATCTGCGTTTGTGTATGTGTGTGTGTGTAGCGA------GGCACCGGGGGGGATAGC 407 consensus_6470#2 TGTATCTGCGTTTGTGTATGTGTGTGTGTGTAGCGA------GGCATCGGGGGG-ATAGC 193 consensus_6470#1 CCCGTCGCCGGTGGACAAGACGACGATCTGTGACGATCTGCTGGTACCGTGCAGTCCGGG 261 ** ** * * * * * *** *** ** * ** * * * consensus_6470#0 GGGACAAGGGACGAAAGGCAAAACACAACATACATCATCCATCACGCAAAC-ACTGGATT 466 consensus_6470#2 GG-ACAAGGGACGAAAGGCTAAACACAACATACATCATCCATCACGCAAAC-ACTGGATT 251 consensus_6470#1 CGATCCGGGCGCGATCGAGATGACGTGG-GTGGACCTGCCGGGCGACAAGCTGTTCGAGC 320 * * ** *** * ** * * * ** *** * * ** consensus_6470#0 TATGCA-AACGATTACTTTAACA---ATATTCTTCGTTAGAAGCAAACACCACTACACTC 522 consensus_6470#2 TATGCA-AACGATTATTTAAA-----ATATTCTTCGTTAGAAGCAAACACCACTACACTC 305 consensus_6470#1 CGCCCGTAACGATGAACGACATGCTGAAATCTCTGGCCAGTACGAAAC-CGACCGTAAAC 379 * ****** * * * ** * * ** * **** * ** * * consensus_6470#0 AAGCTGCAAATACACAGGCCACACACACACACACACGTGCGCGTGCGGGAGGAAGCATAA 582 consensus_6470#2 AA-CTGCAAATACACAA-CCACACACACACACACACGTGCGCGTGCGGGAGGAAGCATAA 363 consensus_6470#1 GAGGATGACATGAAGAAGCTGGACAAATTTAC---CGAGGACTTTGGCCAAGAGGGTTAG 436 * * ** * * * *** * ** ** * * * * * ** * ** consensus_6470#0 AGTGGAGAGAAGAGGAACAAAAGTAATTAAAACTCTAACACTATCGACTCTATATACATG 642 consensus_6470#2 AGTGGAGAGAAGAGGAACAAAAGTAATTAAAACTCTAACACTATCGACTCTATATACATG 423 consensus_6470#1 GCAGGCGATTCGAAAAACAGAAGATATTCGACTGTGTGTGTGTGTGTATTTGTGTGGAAG 496 ** ** ** **** *** *** * * * * * * * * consensus_6470#0 T-ATGGAAACAAACAAAAAATCCCGTTGATCTATGTATCATCATTTCAAAATAATGCCTT 701 consensus_6470#2 T-ATGG------------------------------------------------------ 428 consensus_6470#1 AGATGGACACAGGGAGA------------------------------------------- 513 **** consensus_6470#0 GCCGTGT 708 consensus_6470#2 ------- consensus_6470#1 ------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||