These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6473#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 998 fasta sequence [CCGGCGAGAGGAGAGAGAGAGAGAGAGTGTTCGTCGCCCGCGCAACTATTATTTCTATGATTTAGTACTCATCACTCACAAACACACACTAACACATCCACTCTATCATCAAGCTCTGGCGGCTGGCGCGGGGCTCAGTCGAGATCATCCAGTTCCTTCAACTCTCCAAGGAAGGGACGATGTGCATACATAACCGTGTTTGTCCTCATCTGTGTCAGCATCTCAACCACCATACCCGTCATCCATCCAGCTTCCCTTCTAATCCCCGTTTCACCCATCGCTCCCATCTGTTGTAATGATAATGTAGCTAAAGTTATTGATAGAAAGTATTTAGTTTCGTTTTGTGTAGTTTTAAATGTATTTTCTAAAGTATAAAAAAGTTTATATATTTTAACGTGGATACGTGCGTACGTACAACGGGTACCACCACACACCCGAAGTCGATTTGCTGCGCGCCACCCCGACGGGACCCTGCCGCGGTATGCGCACTCTGACACTAAGCCATCTTACATCCAGTCACATTGTGTAAAATGTCCCGTTTTGGTCGACAAACTCTACTATTCTAGCCTTGTTTTTTTCGGCTTTTACCAAGATAGACACGAAGCGCAAGAAACAATCGCATCAAAAACAAGCTGAATGTTTTGTTTCGCTAGCGCTCGCTAGATGGCGCGTCCGTCGCCACAGAGAGAGAGAGAGAGAAAAAGCGTGCGCGCTCGCATTTTTCAATGGCGGGAAACTAGGTTTCGTGTTTTGTTGTTCTTCTCGCCCTTTCTGTTTGCCCCTTTCTTTTTGGCAGGAAAGTTAACCACAAAAGCATACCTGCGTTTTAGCGTGTGTAGCAATGGTGAGACGATCAAAGGTTAATCCCCTTTTAGCGCTCGAAGCGCTTCATTTTGCAAGAAGTACATTTACATATATATTTCTCAAGGAAAAGATGAAACGATTATTGAATTTTAAAATGCTTCTCATCAATGCTGCTGCTGCAGTTTCCCCTGTGT] [+] EMBL BM635940 [CCGGCGAGAGGAGAGAGAGAGAGAGAGTGTTCGTCGCCCGCGCAACTATTATTTCTATGATTTAGTACTCATCACTCACAAACACACACTAACACATCCACTCTATCATCAAGCTCTGGCGGCTGGCGCGGGGCTCAGTCGAGATCATCCAGTTCCTTCAACTCTCCAAGGAAGGGACGATGTGCATACATAACCGTGTTTGTCCTCATCTGTGTCAGCATCTCAACCACCATACCCGTCATCCATCCAGCTTCCCTTCTAATCCCCGTTTCACCCATCGCTCCCATCTGTTGTAATGATAATGTAGCTAAAGTTATTGATAGAAAGTATTTAGTTTCGTTTTGTGTAGTTTTAAATGTATTTTCTAAAGTATAAAAAAGTTTATATATTTTAACGTGGATACGTGCGTACGTACAACGGGTACCACCACACACCCGAAGTCGATTTGCTGCGCGCCACCCCGACGGGACCCTGCCGCGGTATGCGCACTCTGACACTAAGCCATCTTACATCCAGTCACATTGTGTAAAATGTCCCGTTTTGGTCGACAAACTCTACTATTCTAGCCTTGTTTTTTTCGGCTTTTACCAAGATAGACACGAAGCGCAAGAAACAATCGCATCAAAAACAAGCTGAATGTTTTGTTTCGCTAGCGCTCGCTAGATGGCGCG ] [+] EMBL BM619877 [ ccgGTTTTAAATGTATTTTCTAAAGTATAAAAAAGTTTATATATTTTAACGTGGATACGTGCGTACGTACAACGGGTACCACCACACACCCGAAGTCGATTTGCTGCGCGCCACCCCGACGGGACCCTGCCGCGGTATGCGCACTCTGACACTAAGCCATCTTACATCCAGTCACATTGTGTAAAATGTCCCGTTTTGGTCGACAAACTCTACTATTCTAGCCTTGTTTTTTTCGGCTTTTACCAAGATAGACACGAAGCGCAAGAAACAATCGCATCAAAAACAAGCTGAATGTTTTGTTTCGCTAGCGCTCGCTAGATGGCGCGTCCGTCGCCACAGAGAGAGAGAGAGAGAAAAAGCGTGCGCGCTCGCATTTTTCAATGGCGGGAAACTAGGTTTCGTGTTTTGTTGTTCTTCTCGCCCTTTCTGTTTGCCCCTTTCTTTTTGGCAGGAAAGTTAACCACAAAAGCATACCTGCGTTTTAGCGTGTGTAGCAATGGTGAGACGATCAAAGGTTAATCCCCTTTTAGCGCTCGAAGCGCTTCATTTTGCAAGAAGTACATTTACATATATATTTCTCAAGGAAAAGATGAAACGATTATTGAATTTTAAAATGCTTCTCATCAATGCTGCTGCTGCAGTTTCCCCTGTGT] consensusID : consensus_6473#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 926 fasta sequence [TCAAGGAAAAGAATGAAACGATTATTGAATTTTAAAATGCTTCTCATCAATGCTGCTGCTGCTGCTGTTTCCCCTTTGCGGGTTCAGCAGCAGAGAAGAAAGTAAGAAGAAGAAGAAGAAACGTATAAATTTCCTCCCATTTCGAAGTGCGTGCTATGCCTCGGAAACGGTCGTGTGTGTATTAATATCGGTGTAAAGCCCCCGCGCGCGCGGTACTCTCCTTAGCGCACTTAGCTGTGTTGGCCAATTGGTCGACGTCCAACTCTTATTTGTGCTAATTAGAATCTTCGAGGGTTCCGATACGGCCGCCCACAACCACAACCTCTAGGAGAGATGGGGGGTGGGTGTCTGGGGGCGAGTGTGTTTGTGTGTCTCCCACGCACACGCCTCCGCTAATGGCCGAGAGATATACATATATAAGTATGAACATATTAAAAACAAAAGAAAAACCAATCAATACCTTCTGTCTGTACTCTAGGTTTAGTCGATGTGTATGTTGAGAGAGAAAGAGAGAGAGCGAGAGAGCAAAACTTTAAGCATTATAATACAACTCCCCCCTGAGAAAGGGGGCCGAAATTAGAAAGCAGCAAGCGCGTGGGAGGGGTAGAGGAGCAGAAGTTTAGAATGAAACAGAAGAGGATGAAAGCTCATCCTCTTTGGTATGTTAGCCATGTAGCGGTGGAGTAATAGTAGCAGGGAAAGAGAATTGAAGCGGAATTACATCGAGGAAGAGGAAAGGCGCGGTGCGTGTGTATTTATCCGCCAGACACACACCCTTGTTCGTGGGGTGTAGGATCGGAGTTGCAAAGAGAAGTGTGTACGCTTTTTCGAAAGGAAATAGGCAAGGCAGAATAGCAGAAACAAAGAAAACTAAACAGCAAAACAGTAAAATACAATAAATGTTTCAAAACATCATAATGAAAAAA] [+] EMBL CNS08H92 [TCAAGGAAAAGAATGAAACGATTATTGAATTTTAAAATGCTTCTCATCAATGCTGCTGCTGCTGCTGTTTCCCCTTTGCGGGTTCAGCAGCAGAGAAGAAAGTAAGAAGAAGAAGAAGAAACGTATAAATTTCCTCCCATTTCGAAGTGCGTGCTATGCCTCGGAAACGGTCGTGTGTGTATTAATATCGGTGTAAAGCCCCCGCGCGCGCGGTACTCTCCTTAGCGCACTTAGCTGTGTTGGCCAATTGGTCGACGTCCAACTCTTATTTGTGCTAATTAGAATCTTCGAGGGTTCCGATACGGCCGCCCACAACCACAACCTCTAGGAGAGATGGGGGGTGGGTGTCTGGGGGCGAGTGTGTTTGTGTGTCTCCCACGCACACGCCTCCGCTAATGGCCGAGAGATATACATATATAAGTATGAACATATTAAAAACAAAAGAAAAACCAATCAATACCTTCTGTCTGTACTCTAGGTTTAGTCGATGTGTATGTTGAGAGAGAAAGAGAGAGAGCGAGAGAGCAAAACTTTAAGCATTATAATACAACTCCCCCCTGAGAAAGGGGGCCGAAATTAGAAAGCAGCAAGCGCGTGGGAGGGGTAGAGGAGCAGAAGTTTAGAATGAAACAGAAGAGGATGAAAGCTCATCCTCTTTGGTATGTTAGCCATGTAGCGGTGGAGTAATAGTAGCAGGGAAAGAGAATTGAAGCGGAATTACATCGAGGAAGAGGAAAGGCGCGGTGCGTGTGTATTTATCCGCCAGACACACACCCTTGTTCGTGGGGTGTAGGATCGGAGTTGCAAAGAGAAGTGTGTACGCTTTTTCGAAAGGAAATAGGCAAGGCAGAATAGCAGAAACAAAGAAAACTAAACAGCAAAACAGTAAAATACAATAAATGTTTCAAAACATCATAATGAAAAAA] [-] EMBL CNS08H93 [ ttTTTGTGCTAATTAGAATCTTCGAGGGTTCCGATACGGCCGCCCACAACCACAACCTCTAGGAGAGATGGGGGGTGGGTGTCTGGGGGCGAGTGTGTGTGTGTGTGTCCCACGCACACGCCTCCGCTAAT GCCGAGAGATATACATATATAAGTATGAACATATTAAAAACAAAAGAAAAACCAATCAATACCTTCTGTCTGTACTCTAGGTTTAGTCGATGTGTATGTTGAGAGAGAAAGAGAGAGAGCGAGAGAGCAAAACTTTAAGCATTATAATACAACTCCCCCCTGAGAAAGGGGGCCGAAATTAGAAAGCAGCAAGCG GTGGGAGGGGTAGAGGAGCAGAAGTTTAGAATGAAACAGAAGAGGATGAAAGCTCATCCTCTTTGGTATGTTAGCCATGTAGCGGTGGAGTAATAGTAGCAGGGAAAGAGAATTGAAGCGGAATTACATCGAGGAAGAGGAAAGGCGCGGTGCGTGTGTGTGTGTGCGCCAGAAAAACACCCTTGTTCGTGGGGTGTAGGATCGGAGTTGCAAAGAGAAGTGTGTACGCTTTTTCGAAAGGGAATAGGCAAGGCAGGATAGCAGAAACAAAGAAAACTAAACAGCAAAACAGTAAAATAAAATAAATGTT ] consensusID : consensus_6473#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 671 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCAGGAAAGTTCGCCAGAAAAGCAAACCTGCGTTTTTAGCGTGTGTAGCAATGGTGAGACGATCAAAGGTTAATCCCCTCTTAGCGCTCGAAGCGCTTCATTTTGCAAGAAGTACATTTATATATATATATTTCTCAAGGAAAAGATGAAACGATTATTGAATTTTAAAATGCTTCTCATCAATGCTGCTGCTGCTGCTGCTGATTCCCCTTTGCTGGTTCGGCAGCAGAGAAGAAAGTAGGAAGAAGAAGAAGACGTATGAATTTCCTCCCATTTCGAAATGCTATGCCTCGAAAACGGTCGTGTGTGTATTAATATCGGTGTAAAGCCCCCGCGCGCGCGCGGTTCTCTCCTTAGCGCACTTAGCCGTGTTGGTCAATTGGTCGACGTCCAACTCTTATTTGTGCTAATTAGAATCTTCGAGGGTTCCGATACGGCCGCCCACAACCACACCCTCTAGGGGGAGATGGGTGTCTGGGGGCGAGTGTATGTGTGTGTGTGTCCCACGCACACGCCTCCGCTAATGGCCGAGAGATATACATATATAAGTATGAACATATTAAAAACAAAAGAAAAACCAATCAATACCTTCTGTCTGTCCTCTAGGTTTAGCCGATGTGTATGTTGAGAGAGAAGGAGAGAGAG] [+] EMBL BM635924 [CCGCCCACGCGTCCGCCCACGCGTCCGCAGGAAAGTTCGCCAGAAAAGCAAACCTGCGTTTTTAGCGTGTGTAGCAATGGTGAGACGATCAAAGGTTAATCCCCTCTTAGCGCTCGAAGCGCTTCATTTTGCAAGAAGTACATTTATATATATATATTTCTCAAGGAAAAGATGAAACGATTATTGAATTTTAAAATGCTTCTCATCAATGCTGCTGCTGCTGCTGCTGATTCCCCTTTGCTGGTTCGGCAGCAGAGAAGAAAGTAGGAAGAAGAAGAAGACGTATGAATTTCCTCCCATTTCGAAATGCTATGCCTCGAAAACGGTCGTGTGTGTATTAATATCGGTGTAAAGCCCCCGCGCGCGCGCGGTTCTCTCCTTAGCGCACTTAGCCGTGTTGGTCAATTGGTCGACGTCCAACTCTTATTTGTGCTAATTAGAATCTTCGAGGGTTCCGATACGGCCGCCCACAACCACACCCTCTAGGGGGAGATGGGTGTCTGGGGGCGAGTGTATGTGTGTGTGTGTCCCACGCACACGCCTCCGCTAATGGCCGAGAGATATACATATATAAGTATGAACATATTAAAAACAAAAGAAAAACCAATCAATACCTTCTGTCTGTCCTCTAGGTTTAGCCGATGTGTATGTTGAGAGAGAAGGAGAGAGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6473#1 ------------------------------------------------------------ consensus_6473#2 ---------------------------------CCGCCCACGCGTCCGCCCACGCGTCCG 27 consensus_6473#0 CCGGCGAGAGGAGAGAGAGAGAGAGAGTGTTCGTCGCCCGCGCAACTATTATTTCTATGA 60 consensus_6473#1 ------------------------------------------------------------ consensus_6473#2 CAGGAAAGTTCGC-CAGAAAAGCAAACCTGCGTTTTTAGCGTGTGTAGCAATGGTGAGAC 86 consensus_6473#0 TTTAGTACTCATCACTCACAAACACACACTAACACATCCACTCTATCATCAAGCTCTGGC 120 consensus_6473#1 ------------------------------------------------------------ consensus_6473#2 GATCAAAGGTTAATCCCCTCTTAGCGCTCGAAGCGCTTCATTTTGCAAGAAGTACATTTA 146 consensus_6473#0 GGCTGGCGCGGGGCTCAGTCGAGATCATCCAGTTCCTTCAACTCTCCAAGGAAGGGACGA 180 consensus_6473#1 --------------TCAAGGAAAAGAATGAAACGATTATTGAATTTTAAA----ATGCTT 42 consensus_6473#2 TATATATATATTTCTCAAGGAAAAGA-TGAAACGATTATTGAATTTTAAA----ATGCTT 201 consensus_6473#0 TGTGCATACATAACC---GTGTTTGTCCTCATCTGTGTCAGCATCTCAACCACCATACCC 237 * * * * * * ** * ** ** * consensus_6473#1 CTCATCAATGCTGCTGC--TGCTGCTGT---TTCCCCTTTGCGGGTTCAGCAGCAGAGAA 97 consensus_6473#2 CTCATCAATGCTGCTGC--TGCTGCTGCTGATTCCCCTTTGCTGGTTCGGCAGCAGAGAA 259 consensus_6473#0 GTCATCCATCCAGCTTCCCTTCTAATCCCCGTTTCACCCATCGCTCCCATCTGTTGTAAT 297 ***** ** * *** * * ** * ** * * * * * * * * consensus_6473#1 GAAAGTAAGAAGAAGAAGAAGAAACGTATAAATTTCCTCCCATTTCGAAGTGCGTGCTAT 157 consensus_6473#2 GAAAGTAGGAAGAAGAAGAAGA--CGTATGAATTTCCTCCCATTTCGAAATGC----TAT 313 consensus_6473#0 GATAATGTAGCTAAAGTTATTGATAGAAAGTATTTAGTTTCGTTTTGTGTAGTTTTAAAT 357 ** * * ** * * * **** * * *** * * ** consensus_6473#1 GC---CTCGGAAACGGTCGTGTGTGTATTAATATCGGTGTAAAGCCCCCGCGCGCGCG-- 212 consensus_6473#2 GC---CTCGAAAACGGTCGTGTGTGTATTAATATCGGTGTAAAGCCCCCGCGCGCGCGCG 370 consensus_6473#0 GTATTTTCTAAAGTATAAAAAAGTTTATATATTTTAACGTGGA-TACGTGCGTACGTACA 416 * ** ** ** *** ** * ** * * *** ** consensus_6473#1 GTACTCTCCTTAGCGCACTTAGCTGTGTTGGCCAATTGGTCGACGTCCAACTCTTATTTG 272 consensus_6473#2 GTTCTCTCCTTAGCGCACTTAGCCGTGTTGGTCAATTGGTCGACGTCCAACTCTTATTTG 430 consensus_6473#0 ACGGGTACCACCACACACCCGA-------AGTCGATTTGCTG-CGCGCCACCCCGACGGG 468 ** * *** * * *** * * ** * ** * * * consensus_6473#1 TGCTAATTAGAATCTTCGAGGGTTCCGATACGGCCGCCC-ACAACCACAACCTCTAGGAG 331 consensus_6473#2 TGCTAATTAGAATCTTCGAGGGTTCCGATACGGCCGCCC-ACAACCACACCCTCTAGG-- 487 consensus_6473#0 ACCCTGCCGCGGTATGCGCACTCTGACACTAAGCCATCTTACATCCAGTCACATTGTGTA 528 * * * ** * * *** * *** *** * * * consensus_6473#1 AGATGGGGGGTGGGTGTCTGGGGGCGAGTG--TGTTTGTGTGTCTCCCACGCACACGCCT 389 consensus_6473#2 ----GGGAGATGGGTGTCTGGGGGCGAGTGTATGTGTGTGTGTGTCCCACGCACACGCCT 543 consensus_6473#0 ----AAATGTCCCGTTTTGGTCGACAAACTCTACTATTCTAGCCTTGTTTTTTTCGGCTT 584 * ** * * * * * * * * * ** * consensus_6473#1 CCGCTAATGGCCGAGAGATATACATATATAAGTATGAACATATTAAAAACAAAAGAAAAA 449 consensus_6473#2 CCGCTAATGGCCGAGAGATATACATATATAAGTATGAACATATTAAAAACAAAAGAAAAA 603 consensus_6473#0 TTACCAA-----GATAGACACGAAGCGCAAGAAACAATCGCATCAAAAACAAGCTGAA-- 637 * ** ** *** * * * * * * ** ******** ** consensus_6473#1 CCAATCAATACCTTCTGTCTGTACTCTAGGTTTAGTCGATGTGTATGTTGAGAGAGAAAG 509 consensus_6473#2 CCAATCAATACCTTCTGTCTGTCCTCTAGGTTTAGCCGATGTGTATGTTGAGAGAGAAGG 663 consensus_6473#0 -TGTTTTGTTTCGCTAGCGCTCGCTAGATGGCGCGTCCGTCGCCACAGAGAGAGAGAGAG 696 * * * * ** * * * * * * ******** * consensus_6473#1 AGAGAGAGCGAGAGAGCAAAACTTTAAGCATTATAATACAACTCCCCCCTGAGAAAGGGG 569 consensus_6473#2 AGAGAGAG---------------------------------------------------- 671 consensus_6473#0 AGAAAAAGCGTGCGCGCTCGCATTTTTCAATGGCGGGA-AACTAGGTTTCGTGTTTTGTT 755 *** * ** consensus_6473#1 GCCGAAATTAGAAAGCAGCAAGCGCGTGGGAGGGGTAGAGGAGCAGAAGTTTAGAATGAA 629 consensus_6473#2 ------------------------------------------------------------ consensus_6473#0 GTTCTTCTCGCCCTTTCTGTTTGCCCCTTTCTTTTTGGCAGGAAAGTTAACCACAAAAGC 815 consensus_6473#1 ACAGAAGAGGATGAAAGCTCATCCTCTTTGGTATGTTAGCCATGTAGCGGTGGAGTAATA 689 consensus_6473#2 ------------------------------------------------------------ consensus_6473#0 ATACCTGCGTTTTAGCGTGTGTAG-CAATGGTGAGACGATCAAAGGTTAATCCCCTTTTA 874 consensus_6473#1 GTAGCAGGGAAAGAGAATTGAAGCGGAATTACATCGAGGAAGAGGAAAGGCGCGGTGCGT 749 consensus_6473#2 ------------------------------------------------------------ consensus_6473#0 GCGCTCGAAGCGCTTCATTTTGCAAGAAGTACATTTACATATATATTTCTCAAGGAAAAG 934 consensus_6473#1 GTGTATTTATCCGCCAGACACACACCCTTGTTCGTGGGGTGTAGGATCGGAGTTGCAAAG 809 consensus_6473#2 ------------------------------------------------------------ consensus_6473#0 ATGAAACGATTATTGAATTTTAAAATGCTTCTCATCAATGCTGCTGCTGCAGTTTCCCCT 994 consensus_6473#1 AGAAGTGTGTACGCTTTTTCGAAAGGAAATAGGCAAGGCAGAATAGCAGAAACAAAGAAA 869 consensus_6473#2 ------------------------------------------------------------ consensus_6473#0 GTGT-------------------------------------------------------- 998 consensus_6473#1 ACTAAACAGCAAAACAGTAAAATACAATAAATGTTTCAAAACATCATAATGAAAAAA 926 consensus_6473#2 --------------------------------------------------------- consensus_6473#0 --------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||