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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6473#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 998 fasta sequence
[CCGGCGAGAGGAGAGAGAGAGAGAGAGTGTTCGTCGCCCGCGCAACTATTATTTCTATGATTTAGTACTCATCACTCACAAACACACACTAACACATCCACTCTATCATCAAGCTCTGGCGGCTGGCGCGGGGCTCAGTCGAGATCATCCAGTTCCTTCAACTCTCCAAGGAAGGGACGATGTGCATACATAACCGTGTTTGTCCTCATCTGTGTCAGCATCTCAACCACCATACCCGTCATCCATCCAGCTTCCCTTCTAATCCCCGTTTCACCCATCGCTCCCATCTGTTGTAATGATAATGTAGCTAAAGTTATTGATAGAAAGTATTTAGTTTCGTTTTGTGTAGTTTTAAATGTATTTTCTAAAGTATAAAAAAGTTTATATATTTTAACGTGGATACGTGCGTACGTACAACGGGTACCACCACACACCCGAAGTCGATTTGCTGCGCGCCACCCCGACGGGACCCTGCCGCGGTATGCGCACTCTGACACTAAGCCATCTTACATCCAGTCACATTGTGTAAAATGTCCCGTTTTGGTCGACAAACTCTACTATTCTAGCCTTGTTTTTTTCGGCTTTTACCAAGATAGACACGAAGCGCAAGAAACAATCGCATCAAAAACAAGCTGAATGTTTTGTTTCGCTAGCGCTCGCTAGATGGCGCGTCCGTCGCCACAGAGAGAGAGAGAGAGAAAAAGCGTGCGCGCTCGCATTTTTCAATGGCGGGAAACTAGGTTTCGTGTTTTGTTGTTCTTCTCGCCCTTTCTGTTTGCCCCTTTCTTTTTGGCAGGAAAGTTAACCACAAAAGCATACCTGCGTTTTAGCGTGTGTAGCAATGGTGAGACGATCAAAGGTTAATCCCCTTTTAGCGCTCGAAGCGCTTCATTTTGCAAGAAGTACATTTACATATATATTTCTCAAGGAAAAGATGAAACGATTATTGAATTTTAAAATGCTTCTCATCAATGCTGCTGCTGCAGTTTCCCCTGTGT]
[+] EMBL BM635940 [CCGGCGAGAGGAGAGAGAGAGAGAGAGTGTTCGTCGCCCGCGCAACTATTATTTCTATGATTTAGTACTCATCACTCACAAACACACACTAACACATCCACTCTATCATCAAGCTCTGGCGGCTGGCGCGGGGCTCAGTCGAGATCATCCAGTTCCTTCAACTCTCCAAGGAAGGGACGATGTGCATACATAACCGTGTTTGTCCTCATCTGTGTCAGCATCTCAACCACCATACCCGTCATCCATCCAGCTTCCCTTCTAATCCCCGTTTCACCCATCGCTCCCATCTGTTGTAATGATAATGTAGCTAAAGTTATTGATAGAAAGTATTTAGTTTCGTTTTGTGTAGTTTTAAATGTATTTTCTAAAGTATAAAAAAGTTTATATATTTTAACGTGGATACGTGCGTACGTACAACGGGTACCACCACACACCCGAAGTCGATTTGCTGCGCGCCACCCCGACGGGACCCTGCCGCGGTATGCGCACTCTGACACTAAGCCATCTTACATCCAGTCACATTGTGTAAAATGTCCCGTTTTGGTCGACAAACTCTACTATTCTAGCCTTGTTTTTTTCGGCTTTTACCAAGATAGACACGAAGCGCAAGAAACAATCGCATCAAAAACAAGCTGAATGTTTTGTTTCGCTAGCGCTCGCTAGATGGCGCG ]
[+] EMBL BM619877 [ ccgGTTTTAAATGTATTTTCTAAAGTATAAAAAAGTTTATATATTTTAACGTGGATACGTGCGTACGTACAACGGGTACCACCACACACCCGAAGTCGATTTGCTGCGCGCCACCCCGACGGGACCCTGCCGCGGTATGCGCACTCTGACACTAAGCCATCTTACATCCAGTCACATTGTGTAAAATGTCCCGTTTTGGTCGACAAACTCTACTATTCTAGCCTTGTTTTTTTCGGCTTTTACCAAGATAGACACGAAGCGCAAGAAACAATCGCATCAAAAACAAGCTGAATGTTTTGTTTCGCTAGCGCTCGCTAGATGGCGCGTCCGTCGCCACAGAGAGAGAGAGAGAGAAAAAGCGTGCGCGCTCGCATTTTTCAATGGCGGGAAACTAGGTTTCGTGTTTTGTTGTTCTTCTCGCCCTTTCTGTTTGCCCCTTTCTTTTTGGCAGGAAAGTTAACCACAAAAGCATACCTGCGTTTTAGCGTGTGTAGCAATGGTGAGACGATCAAAGGTTAATCCCCTTTTAGCGCTCGAAGCGCTTCATTTTGCAAGAAGTACATTTACATATATATTTCTCAAGGAAAAGATGAAACGATTATTGAATTTTAAAATGCTTCTCATCAATGCTGCTGCTGCAGTTTCCCCTGTGT]
consensusID : consensus_6473#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 926 fasta sequence
[TCAAGGAAAAGAATGAAACGATTATTGAATTTTAAAATGCTTCTCATCAATGCTGCTGCTGCTGCTGTTTCCCCTTTGCGGGTTCAGCAGCAGAGAAGAAAGTAAGAAGAAGAAGAAGAAACGTATAAATTTCCTCCCATTTCGAAGTGCGTGCTATGCCTCGGAAACGGTCGTGTGTGTATTAATATCGGTGTAAAGCCCCCGCGCGCGCGGTACTCTCCTTAGCGCACTTAGCTGTGTTGGCCAATTGGTCGACGTCCAACTCTTATTTGTGCTAATTAGAATCTTCGAGGGTTCCGATACGGCCGCCCACAACCACAACCTCTAGGAGAGATGGGGGGTGGGTGTCTGGGGGCGAGTGTGTTTGTGTGTCTCCCACGCACACGCCTCCGCTAATGGCCGAGAGATATACATATATAAGTATGAACATATTAAAAACAAAAGAAAAACCAATCAATACCTTCTGTCTGTACTCTAGGTTTAGTCGATGTGTATGTTGAGAGAGAAAGAGAGAGAGCGAGAGAGCAAAACTTTAAGCATTATAATACAACTCCCCCCTGAGAAAGGGGGCCGAAATTAGAAAGCAGCAAGCGCGTGGGAGGGGTAGAGGAGCAGAAGTTTAGAATGAAACAGAAGAGGATGAAAGCTCATCCTCTTTGGTATGTTAGCCATGTAGCGGTGGAGTAATAGTAGCAGGGAAAGAGAATTGAAGCGGAATTACATCGAGGAAGAGGAAAGGCGCGGTGCGTGTGTATTTATCCGCCAGACACACACCCTTGTTCGTGGGGTGTAGGATCGGAGTTGCAAAGAGAAGTGTGTACGCTTTTTCGAAAGGAAATAGGCAAGGCAGAATAGCAGAAACAAAGAAAACTAAACAGCAAAACAGTAAAATACAATAAATGTTTCAAAACATCATAATGAAAAAA]
[+] EMBL CNS08H92 [TCAAGGAAAAGAATGAAACGATTATTGAATTTTAAAATGCTTCTCATCAATGCTGCTGCTGCTGCTGTTTCCCCTTTGCGGGTTCAGCAGCAGAGAAGAAAGTAAGAAGAAGAAGAAGAAACGTATAAATTTCCTCCCATTTCGAAGTGCGTGCTATGCCTCGGAAACGGTCGTGTGTGTATTAATATCGGTGTAAAGCCCCCGCGCGCGCGGTACTCTCCTTAGCGCACTTAGCTGTGTTGGCCAATTGGTCGACGTCCAACTCTTATTTGTGCTAATTAGAATCTTCGAGGGTTCCGATACGGCCGCCCACAACCACAACCTCTAGGAGAGATGGGGGGTGGGTGTCTGGGGGCGAGTGTGTTTGTGTGTCTCCCACGCACACGCCTCCGCTAATGGCCGAGAGATATACATATATAAGTATGAACATATTAAAAACAAAAGAAAAACCAATCAATACCTTCTGTCTGTACTCTAGGTTTAGTCGATGTGTATGTTGAGAGAGAAAGAGAGAGAGCGAGAGAGCAAAACTTTAAGCATTATAATACAACTCCCCCCTGAGAAAGGGGGCCGAAATTAGAAAGCAGCAAGCGCGTGGGAGGGGTAGAGGAGCAGAAGTTTAGAATGAAACAGAAGAGGATGAAAGCTCATCCTCTTTGGTATGTTAGCCATGTAGCGGTGGAGTAATAGTAGCAGGGAAAGAGAATTGAAGCGGAATTACATCGAGGAAGAGGAAAGGCGCGGTGCGTGTGTATTTATCCGCCAGACACACACCCTTGTTCGTGGGGTGTAGGATCGGAGTTGCAAAGAGAAGTGTGTACGCTTTTTCGAAAGGAAATAGGCAAGGCAGAATAGCAGAAACAAAGAAAACTAAACAGCAAAACAGTAAAATACAATAAATGTTTCAAAACATCATAATGAAAAAA]
[-] EMBL CNS08H93 [ ttTTTGTGCTAATTAGAATCTTCGAGGGTTCCGATACGGCCGCCCACAACCACAACCTCTAGGAGAGATGGGGGGTGGGTGTCTGGGGGCGAGTGTGTGTGTGTGTGTCCCACGCACACGCCTCCGCTAAT GCCGAGAGATATACATATATAAGTATGAACATATTAAAAACAAAAGAAAAACCAATCAATACCTTCTGTCTGTACTCTAGGTTTAGTCGATGTGTATGTTGAGAGAGAAAGAGAGAGAGCGAGAGAGCAAAACTTTAAGCATTATAATACAACTCCCCCCTGAGAAAGGGGGCCGAAATTAGAAAGCAGCAAGCG GTGGGAGGGGTAGAGGAGCAGAAGTTTAGAATGAAACAGAAGAGGATGAAAGCTCATCCTCTTTGGTATGTTAGCCATGTAGCGGTGGAGTAATAGTAGCAGGGAAAGAGAATTGAAGCGGAATTACATCGAGGAAGAGGAAAGGCGCGGTGCGTGTGTGTGTGTGCGCCAGAAAAACACCCTTGTTCGTGGGGTGTAGGATCGGAGTTGCAAAGAGAAGTGTGTACGCTTTTTCGAAAGGGAATAGGCAAGGCAGGATAGCAGAAACAAAGAAAACTAAACAGCAAAACAGTAAAATAAAATAAATGTT ]
consensusID : consensus_6473#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 671 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGCAGGAAAGTTCGCCAGAAAAGCAAACCTGCGTTTTTAGCGTGTGTAGCAATGGTGAGACGATCAAAGGTTAATCCCCTCTTAGCGCTCGAAGCGCTTCATTTTGCAAGAAGTACATTTATATATATATATTTCTCAAGGAAAAGATGAAACGATTATTGAATTTTAAAATGCTTCTCATCAATGCTGCTGCTGCTGCTGCTGATTCCCCTTTGCTGGTTCGGCAGCAGAGAAGAAAGTAGGAAGAAGAAGAAGACGTATGAATTTCCTCCCATTTCGAAATGCTATGCCTCGAAAACGGTCGTGTGTGTATTAATATCGGTGTAAAGCCCCCGCGCGCGCGCGGTTCTCTCCTTAGCGCACTTAGCCGTGTTGGTCAATTGGTCGACGTCCAACTCTTATTTGTGCTAATTAGAATCTTCGAGGGTTCCGATACGGCCGCCCACAACCACACCCTCTAGGGGGAGATGGGTGTCTGGGGGCGAGTGTATGTGTGTGTGTGTCCCACGCACACGCCTCCGCTAATGGCCGAGAGATATACATATATAAGTATGAACATATTAAAAACAAAAGAAAAACCAATCAATACCTTCTGTCTGTCCTCTAGGTTTAGCCGATGTGTATGTTGAGAGAGAAGGAGAGAGAG]
[+] EMBL BM635924 [CCGCCCACGCGTCCGCCCACGCGTCCGCAGGAAAGTTCGCCAGAAAAGCAAACCTGCGTTTTTAGCGTGTGTAGCAATGGTGAGACGATCAAAGGTTAATCCCCTCTTAGCGCTCGAAGCGCTTCATTTTGCAAGAAGTACATTTATATATATATATTTCTCAAGGAAAAGATGAAACGATTATTGAATTTTAAAATGCTTCTCATCAATGCTGCTGCTGCTGCTGCTGATTCCCCTTTGCTGGTTCGGCAGCAGAGAAGAAAGTAGGAAGAAGAAGAAGACGTATGAATTTCCTCCCATTTCGAAATGCTATGCCTCGAAAACGGTCGTGTGTGTATTAATATCGGTGTAAAGCCCCCGCGCGCGCGCGGTTCTCTCCTTAGCGCACTTAGCCGTGTTGGTCAATTGGTCGACGTCCAACTCTTATTTGTGCTAATTAGAATCTTCGAGGGTTCCGATACGGCCGCCCACAACCACACCCTCTAGGGGGAGATGGGTGTCTGGGGGCGAGTGTATGTGTGTGTGTGTCCCACGCACACGCCTCCGCTAATGGCCGAGAGATATACATATATAAGTATGAACATATTAAAAACAAAAGAAAAACCAATCAATACCTTCTGTCTGTCCTCTAGGTTTAGCCGATGTGTATGTTGAGAGAGAAGGAGAGAGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6473#1 ------------------------------------------------------------
consensus_6473#2 ---------------------------------CCGCCCACGCGTCCGCCCACGCGTCCG 27
consensus_6473#0 CCGGCGAGAGGAGAGAGAGAGAGAGAGTGTTCGTCGCCCGCGCAACTATTATTTCTATGA 60
consensus_6473#1 ------------------------------------------------------------
consensus_6473#2 CAGGAAAGTTCGC-CAGAAAAGCAAACCTGCGTTTTTAGCGTGTGTAGCAATGGTGAGAC 86
consensus_6473#0 TTTAGTACTCATCACTCACAAACACACACTAACACATCCACTCTATCATCAAGCTCTGGC 120
consensus_6473#1 ------------------------------------------------------------
consensus_6473#2 GATCAAAGGTTAATCCCCTCTTAGCGCTCGAAGCGCTTCATTTTGCAAGAAGTACATTTA 146
consensus_6473#0 GGCTGGCGCGGGGCTCAGTCGAGATCATCCAGTTCCTTCAACTCTCCAAGGAAGGGACGA 180
consensus_6473#1 --------------TCAAGGAAAAGAATGAAACGATTATTGAATTTTAAA----ATGCTT 42
consensus_6473#2 TATATATATATTTCTCAAGGAAAAGA-TGAAACGATTATTGAATTTTAAA----ATGCTT 201
consensus_6473#0 TGTGCATACATAACC---GTGTTTGTCCTCATCTGTGTCAGCATCTCAACCACCATACCC 237
* * * * * * ** * ** ** *
consensus_6473#1 CTCATCAATGCTGCTGC--TGCTGCTGT---TTCCCCTTTGCGGGTTCAGCAGCAGAGAA 97
consensus_6473#2 CTCATCAATGCTGCTGC--TGCTGCTGCTGATTCCCCTTTGCTGGTTCGGCAGCAGAGAA 259
consensus_6473#0 GTCATCCATCCAGCTTCCCTTCTAATCCCCGTTTCACCCATCGCTCCCATCTGTTGTAAT 297
***** ** * *** * * ** * ** * * * * * * * *
consensus_6473#1 GAAAGTAAGAAGAAGAAGAAGAAACGTATAAATTTCCTCCCATTTCGAAGTGCGTGCTAT 157
consensus_6473#2 GAAAGTAGGAAGAAGAAGAAGA--CGTATGAATTTCCTCCCATTTCGAAATGC----TAT 313
consensus_6473#0 GATAATGTAGCTAAAGTTATTGATAGAAAGTATTTAGTTTCGTTTTGTGTAGTTTTAAAT 357
** * * ** * * * **** * * *** * * **
consensus_6473#1 GC---CTCGGAAACGGTCGTGTGTGTATTAATATCGGTGTAAAGCCCCCGCGCGCGCG-- 212
consensus_6473#2 GC---CTCGAAAACGGTCGTGTGTGTATTAATATCGGTGTAAAGCCCCCGCGCGCGCGCG 370
consensus_6473#0 GTATTTTCTAAAGTATAAAAAAGTTTATATATTTTAACGTGGA-TACGTGCGTACGTACA 416
* ** ** ** *** ** * ** * * *** **
consensus_6473#1 GTACTCTCCTTAGCGCACTTAGCTGTGTTGGCCAATTGGTCGACGTCCAACTCTTATTTG 272
consensus_6473#2 GTTCTCTCCTTAGCGCACTTAGCCGTGTTGGTCAATTGGTCGACGTCCAACTCTTATTTG 430
consensus_6473#0 ACGGGTACCACCACACACCCGA-------AGTCGATTTGCTG-CGCGCCACCCCGACGGG 468
** * *** * * *** * * ** * ** * * *
consensus_6473#1 TGCTAATTAGAATCTTCGAGGGTTCCGATACGGCCGCCC-ACAACCACAACCTCTAGGAG 331
consensus_6473#2 TGCTAATTAGAATCTTCGAGGGTTCCGATACGGCCGCCC-ACAACCACACCCTCTAGG-- 487
consensus_6473#0 ACCCTGCCGCGGTATGCGCACTCTGACACTAAGCCATCTTACATCCAGTCACATTGTGTA 528
* * * ** * * *** * *** *** * * *
consensus_6473#1 AGATGGGGGGTGGGTGTCTGGGGGCGAGTG--TGTTTGTGTGTCTCCCACGCACACGCCT 389
consensus_6473#2 ----GGGAGATGGGTGTCTGGGGGCGAGTGTATGTGTGTGTGTGTCCCACGCACACGCCT 543
consensus_6473#0 ----AAATGTCCCGTTTTGGTCGACAAACTCTACTATTCTAGCCTTGTTTTTTTCGGCTT 584
* ** * * * * * * * * * ** *
consensus_6473#1 CCGCTAATGGCCGAGAGATATACATATATAAGTATGAACATATTAAAAACAAAAGAAAAA 449
consensus_6473#2 CCGCTAATGGCCGAGAGATATACATATATAAGTATGAACATATTAAAAACAAAAGAAAAA 603
consensus_6473#0 TTACCAA-----GATAGACACGAAGCGCAAGAAACAATCGCATCAAAAACAAGCTGAA-- 637
* ** ** *** * * * * * * ** ******** **
consensus_6473#1 CCAATCAATACCTTCTGTCTGTACTCTAGGTTTAGTCGATGTGTATGTTGAGAGAGAAAG 509
consensus_6473#2 CCAATCAATACCTTCTGTCTGTCCTCTAGGTTTAGCCGATGTGTATGTTGAGAGAGAAGG 663
consensus_6473#0 -TGTTTTGTTTCGCTAGCGCTCGCTAGATGGCGCGTCCGTCGCCACAGAGAGAGAGAGAG 696
* * * * ** * * * * * * ******** *
consensus_6473#1 AGAGAGAGCGAGAGAGCAAAACTTTAAGCATTATAATACAACTCCCCCCTGAGAAAGGGG 569
consensus_6473#2 AGAGAGAG---------------------------------------------------- 671
consensus_6473#0 AGAAAAAGCGTGCGCGCTCGCATTTTTCAATGGCGGGA-AACTAGGTTTCGTGTTTTGTT 755
*** * **
consensus_6473#1 GCCGAAATTAGAAAGCAGCAAGCGCGTGGGAGGGGTAGAGGAGCAGAAGTTTAGAATGAA 629
consensus_6473#2 ------------------------------------------------------------
consensus_6473#0 GTTCTTCTCGCCCTTTCTGTTTGCCCCTTTCTTTTTGGCAGGAAAGTTAACCACAAAAGC 815
consensus_6473#1 ACAGAAGAGGATGAAAGCTCATCCTCTTTGGTATGTTAGCCATGTAGCGGTGGAGTAATA 689
consensus_6473#2 ------------------------------------------------------------
consensus_6473#0 ATACCTGCGTTTTAGCGTGTGTAG-CAATGGTGAGACGATCAAAGGTTAATCCCCTTTTA 874
consensus_6473#1 GTAGCAGGGAAAGAGAATTGAAGCGGAATTACATCGAGGAAGAGGAAAGGCGCGGTGCGT 749
consensus_6473#2 ------------------------------------------------------------
consensus_6473#0 GCGCTCGAAGCGCTTCATTTTGCAAGAAGTACATTTACATATATATTTCTCAAGGAAAAG 934
consensus_6473#1 GTGTATTTATCCGCCAGACACACACCCTTGTTCGTGGGGTGTAGGATCGGAGTTGCAAAG 809
consensus_6473#2 ------------------------------------------------------------
consensus_6473#0 ATGAAACGATTATTGAATTTTAAAATGCTTCTCATCAATGCTGCTGCTGCAGTTTCCCCT 994
consensus_6473#1 AGAAGTGTGTACGCTTTTTCGAAAGGAAATAGGCAAGGCAGAATAGCAGAAACAAAGAAA 869
consensus_6473#2 ------------------------------------------------------------
consensus_6473#0 GTGT-------------------------------------------------------- 998
consensus_6473#1 ACTAAACAGCAAAACAGTAAAATACAATAAATGTTTCAAAACATCATAATGAAAAAA 926
consensus_6473#2 ---------------------------------------------------------
consensus_6473#0 ---------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||