These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6474#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 699 fasta sequence [CCGCACGAACCGCCGTATGGATCCGCGCGACGGTGTCACGCTGTGTGACGCAACCATTCGAGTTTGAGAAATAGCCCAGAACGGATGAGAGACGTTTGCTGCTGTGCTGGGATTGGCGTGCTGTTTTTTTGTTTGTTTGTTTGCCTCGCAGCACCAAAATTTTGACCCACACCCCGCGCCCGAACTGAACGGACGTGCCTGTCTGTTGGGTGGTTAAAGTGCGTGTGTGTGTGTGTGTGATAAACGTGACCTTTAAAAACCAAGTGCTTCAACATGTGAAGGACATCAACTCCGGTGTGGAGTGTGGAACGATCATGCCGTAGTCAATTCTTACGTTGAAGTGTCCTTCCAGAAGTTGGGTCAAAGTTGAGGACACACAAAAGTTCTTTCTCCCCGTTGGGAGGGCTAACCATCAACGTGATAAGAAGTGTGTGTGTGTGTGTGTGAGGGAGAGAAAAATTAAACACAGTGTCAAATTATCCATCAGGCCCGG-TTCGGCTCCGTTTGCTTAAGCGGTGTTTGTTCACACACCCTCCTTGACTCCACAACCCCCTCGGCTGGAAGGTAAACGGGACAATGTTTATCTTTCTACTGTTTGCCTCGGACGGTTGCCGAAATGTGTGCCAAATATTCTCCCCACGGGTTGGTGGCCCGGCTCCGCAAGCATCGGCGCAAACGGGGAGGATGGCAGCCCTTTCC] [+] EMBL BM601368 [CCGCACGAACCGCCGTATGGATCCGCGCGACGGTGTCACGCTGTGTGACGCAACCATTCGAGTTTGAGAAATAGCCCAGAACGGATGAGAGACGTTTGCTGCTGTGCTGGGATTGGCGTGCTGTTTTTTTGTTTGTTTGTTTGCCTCGCAGCACCAAAATTTTAACCTACACCCCGCGCCCGAACGGAACAGACGTGCCTGCCTGTTGGGTGGTTAAAGT GTGTGTGCGTGTGTGTGATAAACGTGACCTTTAAAAAGCAAGTGCTTCAACATGTGAAGGACATCAACTCCGGTGCGGAGTGTGGAACGATCATGCCGTAGTCAATTCTTACGTTGAAGTGTCCTTCCAGAAGTTGGGTCAAAGTTCAGGACACACAAAAGTTCTTTCTCCCCGTTGGGAGGGCAAACCATCAACGTGATAAGAA GTGTGTGTGTGTGTGAGGGAGAGAAAAATTAAACACAGTGTCAAATTATCCATCAGGCCCGGTTTTGCCTGCGTTTGCTTAAGCGGTGTTTGTTCACACACCCTTCTTGACTCCACTCCCCCCTCGGCTGGAAGGTAAACGGGACAATGTTTATCTTTCTACTGTTTGCCTCGGACGGTTGCCGAAATGTGTGCCAAATATTCTCCCCACGGGTTGGTGGCCCGGCTCCGCAAGCATCGGCGCAAACGGGGAGGATGGCAGCCCTTTCC] [+] EMBL BM597222 [ ccggtCGTTTGCTGCTGTGCTGGGATTGGCGTGCTGTTTTTTTG TTGTTTGTTTGCCTCGCAGCACCAAAATTTTGACCCACACCCCGCGCCCGAACTGAACGGACGTGCCTGTCTGTTGGGTGGTTAAAGTGCGTGTGTGTGTGTGTGTGATAAACGTGACCTTTAAAAACCAAGTGCTTCAACATGTGAAGGACATCAACTCCGGTGTGGAGTGTGGAACGATCATGCCGTAGTCAATTCTTACGTTGAAGTGTCCTTCCAGAAGTTGGGTCAAAGTTGAGGACACACAAAAGTTCTTTCTCCCCGTTGGGAGGGCTAACCATCAACGTGATAAGAAGTGTGTGTGTGTGTGTGTGAGGGAGAGAAAAATTAAACACAGTGTCAAATTATCCAT ] [+] EMBL BX622753 [ CCTCGCAGCACCAAAATTTTGACCCACACCCCGCGCCCGAACTGAACGGACGTGCCTGTCTGTTGGGTGGTTAAAGTGCGTGTGTGTGTGTGTGTGATAAACGTGACCTTTAAAAACCAAGTGCTTCAACATGTGAAGGACATCAACTCCGGTGTGGAGTGTGGAACGATCATGCCGTAGTCAATTCTTACGTTGAAGTGTCCTTCCAGAAGTTGGGTCAAAGTTGAGGACACACAAAAGTTCTTTCTCCCCGTTGGGAGGGCTAACCATCAACGTGATAAGAAGTGTGTGTGTGTGTGTGTGAGGGAGAGAAAAATTAAACACAGTGTCAAATTATCCATCAGGCCCGG TTCGGCTCCGTTTGCTTAAGCGGTGTTTGTTCACACACCCTCCTTGACTCCACAA ] [+] EMBL BX614560 [ tcGAGGACACACAAAAGTTCTTTCTCCCCGTTGGGAGGGCTAACCATCAACGTGATAAGAAGTGTGTGTGTGTGTGTGTGAGGGAGAGAAAAATTAAACACAGTGTCAAATTATCCATCACGCCCGG TTCGGCTCCGTTTGCTTAAGCGGTGTTTGTTCACACACCCTCCTTGACTCCACAA ] consensusID : consensus_6474#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 508 fasta sequence [AAGAGGCAAGCGGATGCTCAGCAGAATCGCCACGAGGTTAANTAAGCCCAGAACGGATGAGAGTCGCTTTGCTGCTGTGCTGGGATTGGCGTGCTGTGTCTTCTGTCNGTTTGTTTGCCTCGGCAGCACCAAAAGTTTTAGACCCACACCCCGCGCCCGAACTGAACGGACGTGCCATGATCATGTTGGGTGGTCTAAAGTGCGCTGTGATGTGTGTGTGTGATAAACGTGACCAGTATTAACGAAGCCGAAGGTGCTTCAACCAGTGTGCAAGGACAGTCCAAACTGTCACCGGATGNTGGGACGCTGTGGGCAGNACNGAAAGTCNATTGCCCGGATGAAGGGCAAAGGTGTCAGATTTAGCAGGTTGGAAACAGTGGGTTCGCCGTTTCCCGAGCACAGGNTTGTGGGGGGTACAAAAGAAGGGTCGTTGGAACGGGAAACGAACANCANGAGAGACGGTTGTCTGGTTTCGATCCCGCCCCGGGTGTATGGGGGAAGGGGGCGC] [+] EMBL BX466538 [AAGAGGCAAGCGGATGCTCAGCAGAATCGCCACGAGGTTAANTAAGCCCAGAACGGATGAGAGTCGCTTTGCTGCTGTGCTGGGATTGGCGTGCTGTGTCTTCTGTCNGTTTGTTTGCCTCGGCAGCACCAAAAGTTTTAGACCCACACCCCGCGCCCGAACTGAACGGACGTGCCATGATCATGTTGGGTGGTCTAAAGTGCGCTGTGATGTGTGTGTGTGATAAACGTGACCAGTATTAACGAAGCCGAAGGTGCTTCAACCAGTGTGCAAGGACAGTCCAAACTGTCACCGGATGNTGGGACGCTGTGGGCAGNACNGAAAGTCNATTGCCCGGATGAAGGGCAAAGGTGTCAGATTTAGCAGGTTGGAAACAGTGGGTTCGCCGTTTCCCGAGCACAGGNTTGTGGGGGGTACAAAAGAAGGGTCGTTGGAACGGGAAACGAACANCANGAGAGACGGTTGTCTGGTTTCGATCCCGCCCCGGGTGTATGGGGGAAGGGGGCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6474#0 CCGCACGAACCGCCGTATGGATCCGCGCGACGGTGTCACGCTGTGTGACGCAACCATTCG 60 consensus_6474#1 ------------------------AAGAGGCAAGCGGATGCTCAGCAGAATCGCCA--CG 34 * * * * *** * *** ** consensus_6474#0 AGTTTGAGAAATAGCCCAGAACGGATGAGAGACG-TTTGCTGCTGTGCTGGGATTGGCGT 119 consensus_6474#1 AGGTTAANTAA--GCCCAGAACGGATGAGAGTCGCTTTGCTGCTGTGCTGGGATTGGCGT 92 ** ** * ** ****************** ** ************************* consensus_6474#0 GCTGT-TTTTTTGTTTGTTTGTTTGCCTCG-CAGCACCAAAATTTT--GACCCACACCCC 175 consensus_6474#1 GCTGTGTCTTCTGTCNGTTTGTTTGCCTCGGCAGCACCAAAAGTTTTAGACCCACACCCC 152 ***** * ** *** ************** *********** *** ************ consensus_6474#0 GCGCCCGAACTGAACGGACGTGCCT--GTC-TGTTGGGTGGT-TAAAGTGCG-TGTG-TG 229 consensus_6474#1 GCGCCCGAACTGAACGGACGTGCCATGATCATGTTGGGTGGTCTAAAGTGCGCTGTGATG 212 ************************ ** *********** ********* **** ** consensus_6474#0 TGTGTGTGTGATAAACGTGACCTTTAAAAACCAAG-------TGCTTCAACATGTGAAGG 282 consensus_6474#1 TGTGTGTGTGATAAACGTGACCAGTATTAACGAAGCCGAAGGTGCTTCAACCAGTGTGCA 272 ********************** ** *** *** ********* *** consensus_6474#0 ACATCAACTCCGGTGTGGAGTGTGGAACGATCATGCCGTAGTCAATTCTTACGTTGAAGT 342 consensus_6474#1 AGGACAG-TCCAAACTGTCACCGGATGNTGGGACGCTGTGGGCAGNACNGAAAGTCNATT 331 * ** *** ** * * ** ** * ** * * * * * consensus_6474#0 GTCCTTCCAGAAGTTGGGTCAAAGTTGAGGACACACAAAAGTTCTTTCTCCCCGTTGGGA 402 consensus_6474#1 GCC----CGGATGAAGGGCAAAGGTGTCAGATTTA-GCAGGTTGGAAACAGTGGGTTCGC 386 * * * ** * *** ** ** ** * * *** * * * consensus_6474#0 GGGCTAACCATCAACGTGATAAGAAGTGTGTGTGTGTGTGTGTGAGGGAGAGAAAAATTA 462 consensus_6474#1 CGTTTCCCGAGCACAGGNTTGTGGGGGGTACAAAAGAAGGGTCGTTGGAACGGGAAAC-G 445 * * * * ** * * * * ** * * * *** * *** consensus_6474#0 AACACAGTGTCAAATTATCCATCAGGCCCGGTTCGGCTCCGTTTGCTTAAGCGGTGTTTG 522 consensus_6474#1 AACANCANGAGAGACGGTTGTCTGGTTTCGATCCCGCCCCGGGTGTATGGGGGAAGGGGG 505 **** * * * * * ** * * ** *** ** * * * * * consensus_6474#0 TTCACACACCCTCCTTGACTCCACAACCCCCTCGGCTGGAAGGTAAACGGGACAATGTTT 582 consensus_6474#1 CGC--------------------------------------------------------- 508 * consensus_6474#0 ATCTTTCTACTGTTTGCCTCGGACGGTTGCCGAAATGTGTGCCAAATATTCTCCCCACGG 642 consensus_6474#1 ------------------------------------------------------------ consensus_6474#0 GTTGGTGGCCCGGCTCCGCAAGCATCGGCGCAAACGGGGAGGATGGCAGCCCTTTCC 699 consensus_6474#1 --------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||