These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6475#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1287 fasta sequence [CAGCCAGAATCGNGCACGAGGTNAACACACCAAATAAATTCCTTCGCTTTTTCTCGGTTTCATGGTGCTTATTTTGCCTTTTGCAATAACTAATTAAGAATATTGTTCCGATTTCAATGCTT-CGTAACACTGTGAAAGACTATATTCTTGAGAGCTGTCGTTTGATTCCATGAATATCCTTCGTATGACGGACTATCGAAACTAGTGGCACTACGGCAACCGCAAGTAGAGCATTCTCTTTGCAGTCCTGATTTCTACCACAACAAGGAAGTCCCAGNCCACACCAGTTGGAATCAGTTTGAAGTGTGGTGAAGAA----CCATCATGGACACTAGTTCGAGATCTGTGCAAAAGATAACTTTGGTAACACCCCGCCGAGTGTTGAAAACTACCAGTGACAAGGATCGAAGGCGCATAATATCAGCATTTGAAAAGGGTGTCTCGGCATCAGCCATCAGTAAAATTCTAAACATAAAGCAAGGCACGGTGTATGGAATCATAAAAAATTATAANGAACGTTTGCAGATTGATTCTAAGAAGCGCGGGGGACAAAACCCCAAATTGTTGACACCAGAAGCAATAGATAGTATACATCGCTGGGTAGACGAAAATGAGTCCGTCACGCTAAAGGTACTAACGGAGCGAGTGNTTTAAGGATCACGGTCTGCGCGTAAGCTCTACCACGGTAGCGCGGGAAGTCAGAGCGTACAAAAATCCGACAAAGATGCCAAAAATTCAGTACCGATGCGATCGATGCACCTTAAACCACCAAACCGAGGAATGTCCGTTTGACGATGAAGTAATTGAAGGCTTGAAATGTTCCACCTGCAATGAACCACATGGTGCAAATGATTCGCAGTGCCCTACGCGCAAAGACCCGTTCGCGACGAGTCCACTCCCAAGCGAGGAAATTGAGCATGAGGAAAGTTCGACACAATCTTTCCTGGACGCATTGTCACCGCTGAAAGCAGAACCGTCCTGGCCATCGTCCGCGACTCAAAGCCCTGCACGGGAAACTAGCATCGTGACTGCAACACCGTTAAGTTTTCAAAACGACGTTTCTCACATTATCATCGAAGAAGCGGACGCACTGTCTACTTCCACCGATGCAAATTCCCTGCACGATCCTGAAACGCTGTTGACCATTTTCAAAGAGATGAGCGCCAAACTCAGGGCCTGCCGTACTAAGGCGGATCAAATCCAAGTACTGGGAGAGATCATTATTCGTTACGGATAGGTTGAGTGATAGTGACCGGTTTGCAACGCTAAGCATGGGCAGTGCCAGGGCAA] [+] EMBL BX469377 [CAGCCAGAATCGNGCACGAGGTNAACACACCAAATAAATTCCTTCGCTTTTTCTCGGTTTCATGGTGCTTATTTTGCCTTTTGCAATAACTAATTAAGAATATTGTTCCGATTTCAATGCTTGCGTAACACTGTGAAAGACTATATTCTTGAGAGCTGTCGTTTGATTCCATGAATATCCTTCGTATGACGGACTATCGAAACTAGTGGCACTACGGCAACCGCAAGTAGAGCATTCTCTTTGCAGTCCTGATTTCTACCACAACAAGGAAGTCCCAGNCCACACCAGTTGGAATCAGTTTGAAGTGTGGTGAAGAAGTAGCCATCATGGACACTAGTTCGAGATCTGTGCAAAAGATAACTTTGGTAACACCCCGCCGAGTGTTGAAAACTACCAGTGACAAGGATCGAAGGCGCATAATATCAGCATTTGAAAAGGGTGTCTCGGCATCAGCCATCAGTAAAATTCTAAACATAAAGCAAGGCACGGTGTATGGAATCATAAAAAATTATAANGAACGTTT ] [+] EMBL BX627897 [ GGTTTCATAGTGTTTATTTTGCCTTTTGCAATAAATAATTAAGAATATTGTTCCTATTTCAATGCTT CGTAACACTGTGAAAGACTATATTCTTGAGAGCTGTCGTTTGATTCCATGAATATTCTTCGTATGACGGACTATCGAAACTAGTGGCACTACGGCAACCGCAAGTAGAGCATCCTCTTTGCAGTCCTGATTTCTACCACAACAAGGAAGTCCCAGTCCACACCAGTTGGAATCAGTTTGAAGTGTGGTGAAGAA CCATCATGGACACTAGTTCGAGATCTGTGCAAAAGATAACTTTGGTAACACCCCGCCGAGTGTTGAAAACTACCAGTGACAAGGATCGAAGGCGCATAATATCGGCCTTTGAAAAGGGTGTCTCGGCATCAGCCATCAGTAAAATTCTAAACATAAAGCAAGGCACGGTGTATGGAATCATAAAAAATTATAAGGAACGTTTGCAGATTGATTCTAAGAAGCGCGGGGGACAAAACCCCAAATTGTTGACACCAGAAGCAATAGATAGTATACATCGCTGGGTAGACGAAAATGAGTCCGTCACGCTAAAGGTACTAACGGAGCGAGTGNTTTAAGGATCACGGTCT ] [+] EMBL BM578746 [ ccgGCTAAAGGTACTGACGGAGCGAGTG TTTAAGGATCACGGTCTGCGCGTAAGCTCTACCACGGTAGCGCGGGAAGTCAGAGCGTACAAAAATCCGACAAAGATGCCAAAAATTCAGTACCGATGCGATCGATGCACCTTAAACCACCAAACCGAGGAATGTCCGTTTGACGATGAAGTAATTGAAGGCTTGAAATGTTCCACCTGCAATGAACCACATGGTGCAAATGATTCGCAGTGCCCTACGCGCAAAGACCCGTTCGCGACGAGTCCACTCCCAAGCGAGGAAATTGAGCATGAGGAAAGTTCGACACAATCTTTCCTGGACGCATTGTCACCGCTGAAAGCAGAACCGTCCTGGCCATCGTCCGCGACTCAAAGCCCTGCACGGGAAACTAGCATCGTGACTGCAACACCGTTAAGTTTTCAAAACGACGTTTCTCACATTATCATCGAAGAAGCGGACGCACTGTCTACTTCCACCGATGCAAATTCCCTGCACGATCCTGAAACGCTGTTGACCATTTTCAAAGAGATGAGCGCCAAACTCAGGGCCTGCCGTACTAAGGCGGATCAAATCCAAGTACTGGGAGAGATCATTATTCGTTACGGATAGGTTGAGTGATAGTGACCGGTTTGCAACGCTAAGCATGGGCAGTGCCAGGGCAA] consensusID : consensus_6475#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 471 fasta sequence [GCCGAGGTTTAGTGCCTACGCGCAAGACCGTTCGCGACGAGTCACTCCCAAGCGAGGAAATTGAGCATGAGGAAAGTTCGACACAATCTTCGCTGGACGCATTGTCACCGCGTGAAAGCTGAACCGTTCCTGGNCATCGTCCGCAACTCAAAGCCCTGGCACGGGAAACTAACATCTGTGACTTGGAAACCGTTAAGTTTTCAAAACGACGTTTCGTCACATATATCATTCCGAAGAAAGCTGGACNGCAACTTGTCTAACATTTCCACCCGATTGCGAAATTACCCTGCGAACGATCCTTTGAAAACGCTTGTGTTTGAGCCATATATTCAAACGAAGGATTGAAGCTGCCGAAAACTCAAGGGCGCTTGCCCGTTACCTAAAAGATGCGGGATTCAAAATTCCCAACGGTACTTTGGGGGAAGAAGATTCATATATTTCCGTTAACAGGAGCTTACGAGTTTTGACGTN] [+] EMBL AL931908 [GCCGAGGTTTAGTGCCTACGCGCAAGACCGTTCGCGACGAGTCACTCCCAAGCGAGGAAATTGAGCATGAGGAAAGTTCGACACAATCTTCGCTGGACGCATTGTCACCGCGTGAAAGCTGAACCGTTCCTGGNCATCGTCCGCAACTCAAAGCCCTGGCACGGGAAACTAACATCTGTGACTTGGAAACCGTTAAGTTTTCAAAACGACGTTTCGTCACATATATCATTCCGAAGAAAGCTGGACNGCAACTTGTCTAACATTTCCACCCGATTGCGAAATTACCCTGCGAACGATCCTTTGAAAACGCTTGTGTTTGAGCCATATATTCAAACGAAGGATTGAAGCTGCCGAAAACTCAAGGGCGCTTGCCCGTTACCTAAAAGATGCGGGATTCAAAATTCCCAACGGTACTTTGGGGGAAGAAGATTCATATATTTCCGTTAACAGGAGCTTACGAGTTTTGACGTN] consensusID : consensus_6475#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 456 fasta sequence [GGCAGAATCGCCACGAGGTATCCTTCGTTTNTCTCGGGTTCCATGGTGCTTATTTTGCCTTTTGCAATAACTAATTAAGAATATTGTTCCGATCTTCAATGCTTCGTAACACTGTGGAAAGACTATATTCTTGAGAGCTGTCGTTCTGATTCCATGGAATATCCTTCGTATGACGGTATGTACATCGCTGCAGGACTATCGAAACTAGTGGCACTACGGCAACCGCAAGTAGAGCATCCTCTTTGCAGTCCTGATTTCTACCACTAACAAGGGAAGTCCCAGTCCACACGCAGGTTGGAATCACGTTTGAAGTGTGGTGAGATGAACCATCATGGACACGTAGTTTCAGACGATCTGTGCAAAACGATAACTTTGGTAACAACCCGGCGAGTGTNGAAAACTACCAGTGACAAGGATCGAAGGCGCATAATATCGGNCTTTGAAAAGGGTGTCTCG] [+] EMBL AL929725 [GGCAGAATCGCCACGAGGTATCCTTCGTTTNTCTCGGGTTCCATGGTGCTTATTTTGCCTTTTGCAATAACTAATTAAGAATATTGTTCCGATCTTCAATGCTTCGTAACACTGTGGAAAGACTATATTCTTGAGAGCTGTCGTTCTGATTCCATGGAATATCCTTCGTATGACGGTATGTACATCGCTGCAGGACTATCGAAACTAGTGGCACTACGGCAACCGCAAGTAGAGCATCCTCTTTGCAGTCCTGATTTCTACCACTAACAAGGGAAGTCCCAGTCCACACGCAGGTTGGAATCACGTTTGAAGTGTGGTGAGATGAACCATCATGGACACGTAGTTTCAGACGATCTGTGCAAAACGATAACTTTGGTAACAACCCGGCGAGTGTNGAAAACTACCAGTGACAAGGATCGAAGGCGCATAATATCGGNCTTTGAAAAGGGTGTCTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6475#0 CAGCCAGAATCGNGCACGAGGTNAACACACCAAATAAATTCCTTCGCTTTTTCTCGGTTT 60 consensus_6475#2 -------------------GGCAGAATCGCCACGAGGTATCCTTCGTTTNTCTCGGGTTC 41 consensus_6475#1 -------------------------GCCGAGGTTTAGTG-CCTACGCGCAAGACCGTTCG 34 * *** ** * * consensus_6475#0 CATGGTGCTTATTTTGCCTTTTGCAATAACTAATTAAGAATATT-GTTCCGAT-TTCAAT 118 consensus_6475#2 CATGGTGCTTATTTTGCCTTTTGCAATAACTAATTAAGAATATT-GTTCCGATCTTCAAT 100 consensus_6475#1 CGACGAGTCACTCCCAAGCGAGGAAATTGAGCATGAGGAAAGTTCGACACAATCTTCGCT 94 * * * * * *** ** * *** ** * * ** *** * consensus_6475#0 G--CTTCGTAACACTGTG-AAAGACTATATTCTTGAGAGCTGTCGTT-------TGATTC 168 consensus_6475#2 G--CTTCGTAACACTGTGGAAAGACTATATTCTTGAGAGCTGTCGTTC------TGATTC 152 consensus_6475#1 GGACGCATTGTCACCGCGTGAAAGCTGAACCGTTCCTGGNCATCGTCCGCAACTCAAAGC 154 * * * *** * * ** ** * ** * **** * * consensus_6475#0 CATG-AATATCCTTCGTATGACGG------------------ACTATCGAAACTA-GTGG 208 consensus_6475#2 CATGGAATATCCTTCGTATGACGGTATGTACATCGCTGCAGGACTATCGAAACTA-GTGG 211 consensus_6475#1 CCTGGCACGGGAAACTAACATCTGTGACTTGGAAACCGTTAAGTTTTCAAAACGACGTTT 214 * ** * * * * * * ** **** * ** consensus_6475#0 CACTACGGCAACCG---CAAGTAGAGCATTCTCTTTGCAGTCCTGATTTCTACCAC-AAC 264 consensus_6475#2 CACTACGGCAACCG---CAAGTAGAGCATCCTCTTTGCAGTCCTGATTTCTACCACTAAC 268 consensus_6475#1 CGTCACATATATCATTCCGAAGAAAGCTGGACNGCAACTTGTCTAACATTTCCACCCGAT 274 * ** * * * * * *** * ** * * * * * * consensus_6475#0 AAGG-AAGTCCCAGNCCACACC--AGTTGGAATCA-GTTTGAAGTGTGGTGAA--GAACC 318 consensus_6475#2 AAGGGAAGTCCCAGTCCACACGCAGGTTGGAATCACGTTTGAAGTGTGGTGAGATGAACC 328 consensus_6475#1 TGCG-AAATTACCCTGCGAACGATCCTTTGAAA-ACGCTTGTGTTTGAGCCATATATTCA 332 * ** * * * ** ** *** * * *** * * * * consensus_6475#0 ATCATGGACAC-TAGTTCGAGA---TCTGTGCAAAA-GATAACTTTGGTAACACCCCGCC 373 consensus_6475#2 ATCATGGACACGTAGTTTCAGACGATCTGTGCAAAACGATAACTTTGGTAACAACCCGGC 388 consensus_6475#1 AACGAAGGATTGAAGCTGCCGAAA----ACTCAAGGGCGCTTGCCCGTTACCTAAAAGAT 388 * * * ** * ** *** * ** * * consensus_6475#0 GAGTG-TTGAAAACTACCAGTGACAAG--GATCGAAGGCGCATAATATCAGCATTTGAAA 430 consensus_6475#2 GAGTG-TNGAAAACTACCAGTGACAAG--GATCGAAGGCGCATAATATCGGNCTTTGAAA 445 consensus_6475#1 GCGGGATTCAAAATTCCCAACGGTACTTTGGGGGAAGAAGATTCATATATTTCCGTTAAC 448 * * * * **** * *** * * * **** * * **** * ** consensus_6475#0 AGGGTGTCTCGGCATCAGCCATCAGTAAAATTCTAAACATAAAGCAAGGCACGGTGTATG 490 consensus_6475#2 AGGGTGTCTCG------------------------------------------------- 456 consensus_6475#1 AGGAGCTTACGAGTTTTGACGTN------------------------------------- 471 *** * ** consensus_6475#0 GAATCATAAAAAATTATAANGAACGTTTGCAGATTGATTCTAAGAAGCGCGGGGGACAAA 550 consensus_6475#2 ------------------------------------------------------------ consensus_6475#1 ------------------------------------------------------------ consensus_6475#0 ACCCCAAATTGTTGACACCAGAAGCAATAGATAGTATACATCGCTGGGTAGACGAAAATG 610 consensus_6475#2 ------------------------------------------------------------ consensus_6475#1 ------------------------------------------------------------ consensus_6475#0 AGTCCGTCACGCTAAAGGTACTAACGGAGCGAGTGNTTTAAGGATCACGGTCTGCGCGTA 670 consensus_6475#2 ------------------------------------------------------------ consensus_6475#1 ------------------------------------------------------------ consensus_6475#0 AGCTCTACCACGGTAGCGCGGGAAGTCAGAGCGTACAAAAATCCGACAAAGATGCCAAAA 730 consensus_6475#2 ------------------------------------------------------------ consensus_6475#1 ------------------------------------------------------------ consensus_6475#0 ATTCAGTACCGATGCGATCGATGCACCTTAAACCACCAAACCGAGGAATGTCCGTTTGAC 790 consensus_6475#2 ------------------------------------------------------------ consensus_6475#1 ------------------------------------------------------------ consensus_6475#0 GATGAAGTAATTGAAGGCTTGAAATGTTCCACCTGCAATGAACCACATGGTGCAAATGAT 850 consensus_6475#2 ------------------------------------------------------------ consensus_6475#1 ------------------------------------------------------------ consensus_6475#0 TCGCAGTGCCCTACGCGCAAAGACCCGTTCGCGACGAGTCCACTCCCAAGCGAGGAAATT 910 consensus_6475#2 ------------------------------------------------------------ consensus_6475#1 ------------------------------------------------------------ consensus_6475#0 GAGCATGAGGAAAGTTCGACACAATCTTTCCTGGACGCATTGTCACCGCTGAAAGCAGAA 970 consensus_6475#2 ------------------------------------------------------------ consensus_6475#1 ------------------------------------------------------------ consensus_6475#0 CCGTCCTGGCCATCGTCCGCGACTCAAAGCCCTGCACGGGAAACTAGCATCGTGACTGCA 1030 consensus_6475#2 ------------------------------------------------------------ consensus_6475#1 ------------------------------------------------------------ consensus_6475#0 ACACCGTTAAGTTTTCAAAACGACGTTTCTCACATTATCATCGAAGAAGCGGACGCACTG 1090 consensus_6475#2 ------------------------------------------------------------ consensus_6475#1 ------------------------------------------------------------ consensus_6475#0 TCTACTTCCACCGATGCAAATTCCCTGCACGATCCTGAAACGCTGTTGACCATTTTCAAA 1150 consensus_6475#2 ------------------------------------------------------------ consensus_6475#1 ------------------------------------------------------------ consensus_6475#0 GAGATGAGCGCCAAACTCAGGGCCTGCCGTACTAAGGCGGATCAAATCCAAGTACTGGGA 1210 consensus_6475#2 ------------------------------------------------------------ consensus_6475#1 ------------------------------------------------------------ consensus_6475#0 GAGATCATTATTCGTTACGGATAGGTTGAGTGATAGTGACCGGTTTGCAACGCTAAGCAT 1270 consensus_6475#2 ------------------------------------------------------------ consensus_6475#1 ------------------------------------------------------------ consensus_6475#0 GGGCAGTGCCAGGGCAA 1287 consensus_6475#2 ----------------- consensus_6475#1 ----------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||