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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6477#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1016 fasta sequence
[CGGGCCGAATCGCGGATGATCGCAGTACAATTTTTGACGCGGTTTTGAATTTGTGGGGTGCATTAGCGCTACTTTGATGAGATTTTATTTGACACTGGCTTAGTGCTGCATTGAGTGATTTCATTTTGAAGCCGTTCCAAAAGGATTTACGATTAAATCTCAATTTCGTTCGATGTGAAAATAGTAA--GTAGCTGTACGGATGCATCAACTCACAATGGGGCGGTTTGTGGTCCTATGCTGGTGGTTCTTGCTGCTGACCAACACGATATACCGAACGCAAGTTGCGTGCAGTTCTGTTCTAGTGGCCGACTTCCGGATGACGCGAATGGTTGAACTAAGCAGTCGACCTCCGTACTGCAAGATCCACTCTGACCGTGGAGACATTCAACGCATGCTTTTAGCATCGGACACGAAGAAGGTACGGCAAGTGCCGCGAGAATCGGTAATAGCCCTGGAAGAGGTATGTGGCGAAGCTAGTAACATTTCCGGAGAGCTGCAAGGAGGGCTGGGATTTATTTACCCTGGCACTAAATGGTGTGGACCAGGTACCATCGCAACAAACTATTCCGATGTGGGACGATATGCTGCCGAAGATCAGTGCTGCCGAGAACATGACTTGTGCCCTAATGTGTTACTCCCGGGCGAGTGCCGCCGTGGGTTATGCAACCGTGGCGCCTTCACTCGTTCTCATTGCGACTGTGACGCACGTTTTCAGAAGATGTTTGCAGAACTTAAACACGGAGACGGCCAACACACTTGGTGCTATATTCTTCAATGTCGTACAGGTGACATGCTTTGGCGAAAGAAGACCGTGCTCAGTTTGGCAAAGAGTGGGCTTCAACCAGACGGAAGCGGACGAGCTATGCTCAAGGTGGAAGTATCGGCCGAGCGAAAAATACATCCCAATCATGCAGCAAAAGTCGAATAAATAACTAGCTTCATAGTAAATGCGCGCTGATGGCGTAATCAAGGGTTCTCTGAAGATAGTCAATTGAGGAGCACTACTGTACATGTAC]
[+] EMBL BX606573 [CGGGCCGAATCGCGGATGATCGCAGTACAATTTTTGACGCGGTTTTGAATTTGTGGGGTGCATTAGCGCTACTTTGATGAGATTTTATTTGACACTGGCTTAGTGCTGCATTGAGTGATTTCATTTTGAAGCCGTTCCAAAAGGATTTACGATTAAATCTCAATTTCGTTCGATGTGAAAATAGTAAGTGTAGCTGTACGGATGCATCAACTCACAATGGGGCGGTTTGTGGTCCTATGCTGGTGGTTCTTGCTGCTGACCAACACGATATACCGAACGCAAGTTGCGTGCAGTTCTGTTCTAGTGGCCGACTTCCGGATGACGCGAATGGTTGAACTAAGCAGTCGACCTCCGTACTGCAAGATCCACTCTGACCGTGGAGACATTCAACGCATGCTTTTAGCATCGGACACGAAGAAGGTACGGCAAGTGCCGCGCGAATCGGTAATAGCCCTGGAAGAGGTATGTGGCGAAGCTAGTAACATTTCCGGAGAGCTGCAAGGAGGGCTGGGATTTATTTACCCTGGCACTAAATGGTGTGGACCAGGTACCATCGCAACAAACTATTCCGATGTGGGACGATATGCTGCCGAAGATCAGTGCTGCCGAGAACATGACTTGTGCCCTAATGTGGTACTCC ]
[+] EMBL BX608045 [ CGGTTTTGAATTTGTGGGGTGCATTAGCGCTACTTTGATGAGATTTTATTTGACACTGGCTTAGTGCTGCATTGAGTGATTTCATTTTGAAGCCGTTCCAAAAGGATTTACGATTAAATCTCAATTTCGTTCGATGTGAAAATAGTAA GTAGCTGTACGGATGCATCAACTCACAATGGGGCGGTTTGTGGTCCTATGCTGGTGGTTCTTGCTGCTGACCAACACGATATACCGAACGCAAGTTGCGTGCAGTTCTGTTCTAGTGGCCGACTTCCGGATGACGCGAATGGTTGAACTAAGCAGTCGACCTCCGTACTGCAAGATCCACTCTGACCGTGGAGACATTCAACGCATGCTTTTAGCATCGGACACGAAGAAGGTACGGCAAGTGCCGCGAGAATCGGTAATAGCCCTGGAAGAGGTATGTGGCGAAGCTAGTAACATTTCCGGAGAGCTGCAAGGAGGGCTGGGATTTATTTACCCTGGCACTAAATGGTGTGGACCAGGTACCATCGCAACAAACTATTCCGATGTGGGACGATATGCTGCCGAAGATCAGTGCTGCCGAGAACATGACTTGTGCCCTAATGTGTTACTCCCGGGCGAGTGCCGCCGTGGGTTATGCAACCGTGGCGCCTTCACTCGTTCTCATTGCGACTGTGACGCACGTTTTCAGAAGATGTT ]
[+] EMBL BM610217 [ ccgGCAAGATCCACTCTGACCGTGGAGACATTCAGCGCATGCTTTTAGCATCGGACACGAAGAAGGTACGGCAAGTGCCGCGAGAATCGGTAATAGCCCTGGAAGAGGTATGTGGCGAAGCTAGTAACATTTCCGGAGAGCTGCAAGGAGGGCTGGGATTTATTTACCCTGGCACTAAATGGTGTGGACCAGGTACCATCGCAACAAACTATTCCGATGTGGGACGATATGCTGCCGAAGATCAGTGCTGCCGAGAACATGACTTGTGCCCTAATGTGTTACTCCCGGGCGAGTGCCGCCGTGGGTTATGCAACCGTGGCGCCTTCACTCGTTCTCATTGCGACTGTGACGCACG TTTCAGAAGATGTTTGCAGAACTTAAACACGGAGACGGCCAACACACTTGGTGCTATATTCTTCAATGTCGTACAGGTGACATGCTTTGGCGAAAGAAGACCGTGCTCAGTTTGGCAAAGAGTGGGCTTCAACCAGACGGAAGCGGACGAGCTATGCTCAAGGTGGAAGTATCGGCCGAGCGAAAAATACATCCCAATCATGCAGCAAAAGTCGAATAAATAACTAGCTTCATAGTAAATGCGCGCTGATGGCGTAATCAAGGGTTCTCTGAAGATAGTCAATTGAGGAGCACTACTGTACATGTAC]
consensusID : consensus_6477#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 959 fasta sequence
[CCGAGGTTAAGAGCTATGCTCAAGGGTGGAAGTATGGCGAGCGAAAAATACATCCAATCATAGCAGCAAAAGTCGAATAAATAACTAGCTTCATAGTAAATGCGCGCTGATGGCGTAATCAAGGGTTCTCTGAAGATAGTCAATTGAGGAGCACTACTAGTACATGTACAAGTACATACCGTTACAAAGCATACCAGCTAGTACACACGATTGATCAATAGGGAGTAGAAAATAGGAAAGCTATACTTAAATAAGTAATAGTACATAGTATGGAGCGGAAGNATTGATGTAGACTAGTAAAAATNTAGTTACAAGTTGGTCGTATATAGCTATATAAAGATATTAGCGTCAAGTAANAAGAAACACTCCGCTAACGATAGTGATTGTCGTCTTNTCTCTCGCCTATACGACAGATATGTCTTATGCNGCATCAACTATTAACACTGCNNTTAACTTCAANNCTGTATCTGTGACTGAGGCTAGCTATCTATCANTCCCGTCGTAANGTGTCGNAAAAAAGCGGCCNTCTCCGCNTTCCTACACCGACACGCTACAACCNCTACTACNCCACCACGTCTCCCACTCCACCACTTTACCGTCTGGCCACTTTNTGACAATCACACCCANNTACCAGCCACGCCCAACGACNCNCTTAACAGCGTTATCGGAAAGGGTATNACGACTGAAAGTTGGGCGGCCTTNCCCCGTTAGCGANNTAGTAGNCAGCCTTNTGGCGCGAGTATTCCCGACAGCTTGGAGGCNCTAACCACCTNNACTNCGCCGCTTCNCNCNCCTTCTCCCTACCNGCCGGATTCCCCGGGCNCGGCCGGCCTTCCACAAANGCTGGGTTCGACCAGNCCCCAGGGGCCTTCCACGTTACCGCGTTACGCAGCCCAAGTGACGGTTGTTCGNTCTGCACTGGTTCGNNCCCTANTGNTCCTCCCGCCCCCNGCTCCCGC]
[+] EMBL AL692109 [CCGAGGTTAAGAGCTATGCTCAAGGGTGGAAGTATGGCGAGCGAAAAATACATCCAATCATAGCAGCAAAAGTCGAATAAATAACTAGCTTCATAGTAAATGCGCGCTGATGGCGTAATCAAGGGTTCTCTGAAGATAGTCAATTGAGGAGCACTACTAGTACATGTACAAGTACATACCGTTACAAAGCATACCAGCTAGTACACACGATTGATCAATAGGGAGTAGAAAATAGGAAAGCTATACTTAAATAAGTAATAGTACATAGTATGGAGCGGAAGNATTGATGTAGACTAGTAAAAATNTAGTTACAAGTTGGTCGTATATAGCTATATAAAGATATTAGCGTCAAGTAANAAGAAACACTCCGCTAACGATAGTGATTGTCGTCTTNTCTCTCGCCTATACGACAGATATGTCTTATGCNGCATCAACTATTAACACTGCNNTTAACTTCAANNCTGTATCTGTGACTGAGGCTAGCTATCTATCANTCCCGTCGTAANGTGTCGNAAAAAAGCGGCCNTCTCCGCNTTCCTACACCGACACGCTACAACCNCTACTACNCCACCACGTCTCCCACTCCACCACTTTACCGTCTGGCCACTTTNTGACAATCACACCCANNTACCAGCCACGCCCAACGACNCNCTTAACAGCGTTATCGGAAAGGGTATNACGACTGAAAGTTGGGCGGCCTTNCCCCGTTAGCGANNTAGTAGNCAGCCTTNTGGCGCGAGTATTCCCGACAGCTTGGAGGCNCTAACCACCTNNACTNCGCCGCTTCNCNCNCCTTCTCCCTACCNGCCGGATTCCCCGGGCNCGGCCGGCCTTCCACAAANGCTGGGTTCGACCAGNCCCCAGGGGCCTTCCACGTTACCGCGTTACGCAGCCCAAGTGACGGTTGTTCGNTCTGCACTGGTTCGNNCCCTANTGNTCCTCCCGCCCCCNGCTCCCGC]
consensusID : consensus_6477#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence
[CCGCGGGCCGAATCGCGGATGAGCGCAGTACAATTTTTGACGCGGTTTTGAATTTGTGGGGTGCATTAGCGCTACTTTGATGAGATTTTATTTGACACTGGCTTAGTGCTGCATTGAGTGATTTCATTTTGAAGCCGTTCCAAAAGGTATTAATTTATCAGCAGTGATTATTAACTACCATACGTGATAACAATCTAAAGGATCGTTGGTGTTTAGGCGCAATCAAAGCACAGGAACAATTGAAAATCGTACGTGAAAGGGCAATAATTTAAACAAAAAAAGAGAAACCCGTGCCAAATGCCGATGATGGGTGTGAATTTATGTTGCTGTTTATGACAAAGCTTCATGCTTTTTGTCTAACATAGTAGAGAGTATACTACACATTGGGGTGAAACAACTGTACAAACAGTGATTCACAGTGACATCCTGTGCCCCATCGCGCACATGTGGCCTAAGTGAATAATTTGCCTTTGATTGGTGAAGAATGCAATAGTCGTTTTTATGCATTTGATACGATCTTATCCAAAGTATTAGAGCATCGTATGCTCATGACGATTTATTTTTTGCGTCTTGCTGAAAG]
[+] EMBL BM640095 [CCGCGGGCCGAATCGCGGATGAGCGCAGTACAATTTTTGACGCGGTTTTGAATTTGTGGGGTGCATTAGCGCTACTTTGATGAGATTTTATTTGACACTGGCTTAGTGCTGCATTGAGTGATTTCATTTTGAAGCCGTTCCAAAAGGTATTAATTTATCAGCAGTGATTATTAACTACCATACGTGATAACAATCTAAAGGATCGTTGGTGTTTAGGCGCAATCAAAGCACAGGAACAATTGAAAATCGTACGTGAAAGGGCAATAATTTAAACAAAAAAAGAGAAACCCGTGCCAAATGCCGATGATGGGTGTGAATTTATGTTGCTGTTTATGACAAAGCTTCATGCTTTTTGTCTAACATAGTAGAGAGTATACTACACATTGGGGTGAAACAACTGTACAAACAGTGATTCACAGTGACATCCTGTGCCCCATCGCGCACATGTGGCCTAAGTGAATAATTTGCCTTTGATTGGTGAAGAATGCAATAGTCGTTTTTATGCATTTGATACGATCTTATCCAAAGTATTAGAGCATCGTATGCTCATGACGATTTATTTTTTGCGTCTTGCTGAAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6477#0 ---CGGGCCGAATCGCGGATGATCGCAGTACAATTTTTGACGCGGTTTTGAATTTGTGGG 57
consensus_6477#2 CCGCGGGCCGAATCGCGGATGAGCGCAGTACAATTTTTGACGCGGTTTTGAATTTGTGGG 60
consensus_6477#1 ----------------------CCGAGGTTAAGAGCTATGCTCAAGGGTGGAAGTATGGC 38
** ** * * * * ** * * ***
consensus_6477#0 GTGCATTAGCGCTACTTTGATGAGATTTTATTTGACACTGGCTTAGTGCTGCATTGAGTG 117
consensus_6477#2 GTGCATTAGCGCTACTTTGATGAGATTTTATTTGACACTGGCTTAGTGCTGCATTGAGTG 120
consensus_6477#1 G------AGCGAAAAATACATCCAATCATAGC-AGCAAAAGTCGAATA----AATAACTA 87
* **** * * ** ** ** ** * * * * * * *
consensus_6477#0 ATTTCATTTTGAAGCCGTTCCAAAAGGATTTACGATTAAATCTCAATT-TCGTTCGATGT 176
consensus_6477#2 ATTTCATTTTGAAGCCGTTCCAAAAGGTATTA--ATTTATCAGCAGTGATTATTAACTAC 178
consensus_6477#1 GCTTCATAGTAAATGCGCGCTGATGGCG--------TAA---TCAAGGGTTCTCTGAAGA 136
***** * ** ** * * * * * ** * *
consensus_6477#0 GAAAATAGTAAGTAGCTGTACGGATGCATCAACTCACAATGGGGCGGTTTGTGGTCCTAT 236
consensus_6477#2 CATACGTGATAACAATCTAAAGGAT-CGTTGGTGTTTA--GGCGCAATCAAAGCACAGGA 235
consensus_6477#1 TAGTCAATTGAGGAGCACTACTAGTACATGTACAAGTA--CATACCGTTACAAAGCATAC 194
* * * * * * * * * * *
consensus_6477#0 GCTGGTGGTTCTTGCTGCTGACCAACACGATATACCGAAC--GCAAGTTGCGTGCAGTTC 294
consensus_6477#2 ACAATTGAAAATCGTACGTGAA-AGGGCAATAATTTAAAC--AAAAAAAGAG---AAACC 289
consensus_6477#1 -CAGCTAGTACACACGATTGATCAATAGGGAGTAGAAAATAGGAAAGCTATACTTAAATA 253
* * *** * ** ** *
consensus_6477#0 TGTTCTAGTGGCCGACTTCCGGATGACGCGAATGGTTGAACTAAGCAGTCGACCTCCGTA 354
consensus_6477#2 CGTGCCAAATGCCGA-TGATGGGTGTGAATTTATGTTGCTGTTTATGACAAAGCTTCATG 348
consensus_6477#1 AGTAATAGT-ACATAGTATGGAGCGGAAGNATTGATGTAGACTAGTAA-AAATNTAGTTA 311
** * * * * * * * * * *
consensus_6477#0 CTGCAAGATCCACTCTGACCGTGGAGACAT-TCAACGCATGCTTTTAGCATCGGACACGA 413
consensus_6477#2 CTTTTTG-TCTAACATAGTAGAGAGTATAC-TACACATTGGGGTGAAACAACTG-TACAA 405
consensus_6477#1 CAAGTTGGTCGTATATAGCTATATAAAGATATTAGCGTCAAGTAANAAGAAACACTCCGC 371
* * ** * * * * * * * *
consensus_6477#0 AGAAGGTA-CGGCAAGTGCCGCGAGAATCGGTAATA-GCCCTGGAAGAGGTATGTGGCG- 470
consensus_6477#2 ACAGTG-------ATTCACAGTGACATCCTGT-----GCCCCATCGCGCACATGTGGCCT 453
consensus_6477#1 TAACGATAGTGATTGTCGTCTTNTCTCTCGCCTATACGACAGATATGTCTTATGCNGCAT 431
* * * * *** **
consensus_6477#0 AAGCTAGTAACATTTCCGGAGAGCTGCAAGGAGGGCTGGGATTTATTTACCCTGGCACTA 530
consensus_6477#2 AAGTGAATAAT-TTGCCTTTGATTGGTGAAGAATGC-AATAGTCGTTTTTATGCATTTGA 511
consensus_6477#1 CAACTATTAACACTGCNNTTAACTTCAANNCTGTATCTG---TGACTGAGGCTAGCTATC 488
* * *** * * * * *
consensus_6477#0 AATGGTGTGGACCAGGTACCATCGCAACAAACTATTCCGATGTGGGACGATATGCTGCCG 590
consensus_6477#2 TACGATCTTATCCAA--AGTATTAGAGCATCGTATGCTCATGACGATTTATTTTTTGC-- 567
consensus_6477#1 TATCANTCCCGTCGTAANGTGTCGNAAAAAAGCGGCCNTCTCCGCNTTCCTACACCGAC- 547
* * * * * * * * *
consensus_6477#0 AAGATCAGTGCTGCCGAGAACATGACTTGTGCCCTAATGTGTTACTCCCGGGCGAGTGCC 650
consensus_6477#2 -------GTCTTGCTGAAAG---------------------------------------- 580
consensus_6477#1 -ACGCTACAACCNCTACTACNCCACCACGTCTCCCACTCCACCACTTTACCGTCTG-GCC 605
* *
consensus_6477#0 GCCGTGGGTTATGCAACCGTGGCGCCTTCACTCGTTCTCATTGCGACTGTGACGCACGTT 710
consensus_6477#2 ------------------------------------------------------------
consensus_6477#1 ACTTTNTGACAATCACACCCANNTAC--CAGCCACGCCCAACGACNCNCTTAACAGCGTT 663
consensus_6477#0 TTCAGAAGATGTTTGCAGAACTTAAACACGGAGACGGCCAACACACTTGGTGCTATATTC 770
consensus_6477#2 ------------------------------------------------------------
consensus_6477#1 ATCGGAAAGGGTATNACGA--CTGAAAGTTGGGCGGCCTTNCCCCGTTAGCGANNTAGTA 721
consensus_6477#0 TTCAATGTCGTACAGGTGACATGCTTTGGCGAAAGAAGACCGTGCTCAGTTTGGCAAAGA 830
consensus_6477#2 ------------------------------------------------------------
consensus_6477#1 GNCAGCCTTNTGGCGCGAGTATTCCCGACAGCTTGGAGGCNCTAACCACCTNNACTNCG- 780
consensus_6477#0 GTGGGCTTCAACCAGACGGAAGCGGACGAGCTATGCTCAAGGTGGAAGTATCGGCCGAGC 890
consensus_6477#2 ------------------------------------------------------------
consensus_6477#1 --CCGCTTCNCNCNC-CTTCTCCCTACCNGCCGGATTCCCCGGGCNCGGCCGGCCTTCCA 837
consensus_6477#0 GAAAAATACATCCCAATCATGCAGCAAAAGTCGAATAAATAACTAGCTTCATAGTAAATG 950
consensus_6477#2 ------------------------------------------------------------
consensus_6477#1 CAAANGCTGGGTTCGACCAGNCCCCAGGGGCCTTCCACGTTACC-GCGTTACGCAGCCCA 896
consensus_6477#0 CGCGCTGATGGCGTAATCAAGGGTTCTCTGAAGATAGTCAATTGAGGAGCACTACTGTAC 1010
consensus_6477#2 ------------------------------------------------------------
consensus_6477#1 AGTGACGGTTGTTCGNTCTGCACTGGTTCGNNCCCTANTGNTCCTCCCGC-CCCCNGCTC 955
consensus_6477#0 ATGTAC 1016
consensus_6477#2 ------
consensus_6477#1 CCGC-- 959
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||