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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6478#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 967 fasta sequence
[TTTTGATAAGAGGATTAGTGCCTTCAGCTACGTTTCTCTGTCGTTCCTTT-AACGTTTTTAAATGCACTTTTGTGTAAAAAAAAAAATAAAACTTCACAAAAACACGCCCATTTAACACACGAAAACGAGGTCAGGCAAAACCACACGCGATTCCAAAACGTTCAATTGGGTTGTGTATTGTAAAGTTGATTGATTTTAATTTCATCTTGCAGCGGAGATCGGTAGACTTTTAAGAAGCACACATACACACTTTCGTTTGCATCACACAAACACACAGACACCAAAATATATTTGAAAAAGGTTAGAAAACCAGAGGTTGAATCCGTAGGAACAAGGCAAGCACAGGGAGAAGTCCGGTGCACGCATTATTTATCGGGAGCTCTGTGGCGCTCTGTGTGGAANAGTGTCGTAGGAAAATAAGGACGTAGTGCTATCGTTACTTATGGATTTAGCCACTA-CAGCCAGCAGCAGCAGCAGCAGTAGCCAGG-CAACCCACACCAACGACCCGCGAAACGGCAACAATAGCTTTACAGTTAATCTTCGCGAAAAGATTATGCCGGAGATTTAAGGAACAAACCG-CGTATCTCTCCTGTTTCTCCCTTGACATGTTCGG-GCACAAATACATTAAACGTGATTAGATGGGGCATACGATAAGGTTGTGTTAAACAAAGACCCCGTAGCAAGGAGCTCCTTCTGCGTGGTTCCTCAATAATT-CCGAACCCCTATATTGGGCGACATGG-CGCGTA-GTCG-TACGCCAAG-AGAAGAAGAAG-AGAAGGTGTTAAAAGTGTGCGTTGTAAAATTACGCCAAAATGTTGCTGGTGGCCACCGCCACCGTCTCCCCAAAAAAAAAGCCACCCCTCTTATCCATCCTCTATACTATACTATCCTTAGTAGTAGAACTATCGTGCGGTAATCAGTACGCAAATCCTGTTGTCCACGTACCGTTGGTGTAGTGATTTAGTTAGCA]
[-] EMBL AGESTS1T7 [TTTTGATAAGAGGATTAGTGCCTTCAGCTACGTTTCTCTGTCGTTCCTTT AACGTTTTTAAATGCACTTTTGTGTAAA ]
[+] EMBL AL693699 [ ccgagGCTTTCAGCTACGTTTCTCTGTCGTTCCTTTAAATGTTTTTAAATGCACTTTTGTGTAAAAAAAAAAATAAAACTTCACAAAAACACGCCCATTTAACACACGAAAACGAGGTCAGGCAAAACCACACGCGATTCCAAAACGTTCAATTGGGTTGTGTATTGTAAAGTTGATTGATTTTAATTTCATCTTGCAGCGGAGATCGGTAGACTTTTAAGAAGCACACATACACACTTTCGTTTGCATCACACAAACACACAGACACCAAAATATATTTGAAAAAGGTTAGAAAACCAGAGGTTGAATCCGTAGGAACAAGGCAAGCACAGGGAGAAGTCCGGTGCACGCATTATTTATCGGGAGCTCTGTGGCGCTCTGTGTGGAANAGTGTCGTAGGAAAATAAGGACGTAGTGCTATCGTTACTTATGGATTTAGCCACTA CAGCCAGCAGCAGCAGCAGCAGTAGCCAGG CAACCCACACCAACGACCCGCGAAACGGCAACAATAGCTTTACAGTTAATCTTCGCGAAAAGATTATGCCGGAGATTTAAGGAACAAACCG CGTATCTCTCCTGTTTCTCCCTTGACATGTTCGG GCACAAATACATTAAACGTGATTAGATGGGGCATACGATAAGGTTGTGTTAAACAAAGACCCCGTAGCAAGGAGCTCCTTCTGCGTGGTTCCTCAATAATT CCGAACCCCTATATTGGGCGACATGG CGCGTA GTCG TACGCCAAG AGAAGAAGAAG AGAAGGTGTT ]
[+] EMBL BX626259 [ AAGCACAGGGAGAAGTCCGGTGCACGCATTATTTATCGGGAGCTCTGTGGCGCTCTGTGTGGAA AGTGTCGTAGGAAAATAAGGACGTAGTGCTATCGTTACTTATGGATTTAGCCACTAGCAG CAGCAGCAGCAGCAGCAGTAGCCAGGCCACCCCACACCAACGACCCGCGAAACGGCAACAATAGCTTTACAGTTAATCTTCGCGAAAAGATTATGCCGGAGATTTAAGGAAC AACCGCCGTATCTCTCCTG TTCTCCCTTGACATGTTCGGCGCAC AATA ATTAAACGTGATTAG TGGG ATACGATAAGG TGTGTTAA AAAGACCCCGTAGCAAGGA CTCCTTCTGCGTGGTT CTCAATAATTCCCGAACCCCTATATTGGCCGACATGGCCGCGTAGGTCGTTACGCCAAGAAGAAGAAGAAGAAGAAGGTGTTAAAAGTGTGCGTTGTAAAATTACGCCAAAATGTTGCTGGTGGCCACCGCCACCGTCTCCCCAAAAAAAAAGCCACCCCTCTTATCCATCCTCTATACTATACTATCCTTAGTAGTAGAACTATCGTGCGGTAATCAGTACGCAAATCCTGTTGTCCACGTACCGTTGGTGTAGTGATTTAGTTAGCA]
consensusID : consensus_6478#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 847 fasta sequence
[AGAATCGCCCGAGGNTTTTTAAAGCACTTTTGTGTACAAAAAAGAAAACTTCACTAAAACACGCCCATTTAACACACGAAAACGAGGTCAGGCAAAACCACACGCGATTCCAAAACGTTTCATATGGGTTGTGTATTGTAAAGTTGATTGATTTTAATTTCATCTTGCACCGGAGATCGGTAGACTCTTTCACAGAAGCACACATACACACTTTCGTTTGCATCACACAAACACACAGACACCAAAATATATTTGAAAAAGGTTAGAAAACCACGAGGTTGAATCCGTAGGAACAAGGCAAGCACAGGGAGAAGTCCGGTGCACGTATTATTTATCGGGAGCTCTGTGGCGCTCTGTGTGGAAAGTGTCGTAGGAACAATAAGGACGTAGAGCTATCGTTACTTATGGATTTAGCCACTAGCAGCAGCATCAGCAGCAGCAGTAGCCAGGCCACCCACACAACGACCCGGCAAAACGGNAACAATAGCTTTACAGTAAATCTTCGCGAAAAGATTATACCGGGAGATTTAAGGAACAACGCCGTATCTCTCCTGTTCTCCCTTGACTTGTTCGGCGCCACCAAAATGANTTAAAACGGTGGAATTAAGCTGGGGAATACACGAAATAAAGGTGGTGNTTAANAAAGAGCCCCGTAAGNCAAGGAACTCCCGTTCTGCGGTGGTTCCTCACATAAATTCCCGGAAACCCCTATAATTGGGCCGGCGATGGCCGACGGTAGGGTCGGTCAANCGNCCCCAGTACGCACGCACGACAGCNAGTCAGGTGGTAACAAGTGTGTGTTGTAAAATAACGCCAAAATTTGGTTGATTGGCACCCGCACGAGACC]
[+] EMBL AL932699 [AGAATCGCCCGAGGNTTTTTAAAGCACTTTTGTGTACAAAAAAGAAAACTTCACTAAAACACGCCCATTTAACACACGAAAACGAGGTCAGGCAAAACCACACGCGATTCCAAAACGTTTCATATGGGTTGTGTATTGTAAAGTTGATTGATTTTAATTTCATCTTGCACCGGAGATCGGTAGACTCTTTCACAGAAGCACACATACACACTTTCGTTTGCATCACACAAACACACAGACACCAAAATATATTTGAAAAAGGTTAGAAAACCACGAGGTTGAATCCGTAGGAACAAGGCAAGCACAGGGAGAAGTCCGGTGCACGTATTATTTATCGGGAGCTCTGTGGCGCTCTGTGTGGAAAGTGTCGTAGGAACAATAAGGACGTAGAGCTATCGTTACTTATGGATTTAGCCACTAGCAGCAGCATCAGCAGCAGCAGTAGCCAGGCCACCCACACAACGACCCGGCAAAACGGNAACAATAGCTTTACAGTAAATCTTCGCGAAAAGATTATACCGGGAGATTTAAGGAACAACGCCGTATCTCTCCTGTTCTCCCTTGACTTGTTCGGCGCCACCAAAATGANTTAAAACGGTGGAATTAAGCTGGGGAATACACGAAATAAAGGTGGTGNTTAANAAAGAGCCCCGTAAGNCAAGGAACTCCCGTTCTGCGGTGGTTCCTCACATAAATTCCCGGAAACCCCTATAATTGGGCCGGCGATGGCCGACGGTAGGGTCGGTCAANCGNCCCCAGTACGCACGCACGACAGCNAGTCAGGTGGTAACAAGTGTGTGTTGTAAAATAACGCCAAAATTTGGTTGATTGGCACCCGCACGAGACC]
consensusID : consensus_6478#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 432 fasta sequence
[CCGGATTTAAGGAACAACCGCCGTATCTCTCCTGTTCTCCCTTGACTTGTTCGGCGCACAATAATTAAACGTGATTAGTGGGATACGATGAAGTGTGTTAAAAAGACCCCGTAGAAAGGACTCCTTCTGCGTGGTACTCAATAATTCCCGAACCCCTGTATTGGCCGGCATGGCCACGTAGGTTGTTACGCAAACAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGTGTTAAAAGTGTGCGTTGTAAAATTACGCCAAAATGTTGCTGGTGGCAACCGCCACCGTCCCCCCCCCCCCCCCAAAAAAAAAAGCCACCCCTCTTATCCATCCTCTATACTATACTATCCTTAGTAGTAGAACTATCGTGCGGTAATCAGTACGCAAATCCTGTTGTCCACGTACCGTTGGTGTAGTGATTTAGTTAGTAAC]
[+] EMBL BM651332 [CCGGATTTAAGGAACAACCGCCGTATCTCTCCTGTTCTCCCTTGACTTGTTCGGCGCACAATAATTAAACGTGATTAGTGGGATACGATGAAGTGTGTTAAAAAGACCCCGTAGAAAGGACTCCTTCTGCGTGGTACTCAATAATTCCCGAACCCCTGTATTGGCCGGCATGGCCACGTAGGTTGTTACGCAAACAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGTGTTAAAAGTGTGCGTTGTAAAATTACGCCAAAATGTTGCTGGTGGCAACCGCCACCGTCCCCCCCCCCCCCCCAAAAAAAAAAGCCACCCCTCTTATCCATCCTCTATACTATACTATCCTTAGTAGTAGAACTATCGTGCGGTAATCAGTACGCAAATCCTGTTGTCCACGTACCGTTGGTGTAGTGATTTAGTTAGTAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6478#0 TTTTGATAAGAGGATTAGTGCCTTCAGCTACGTTTCTCTGTCGTTCCTTTAACGTTTTTA 60
consensus_6478#2 ------------------------------------------------------------
consensus_6478#1 ------------------------------------------------------------
consensus_6478#0 AATGCACTTTTGTGTAAAAAAAAAAATAAAACTTCACAAAAACACGCCCATTTAACACAC 120
consensus_6478#2 ------------------------------------------------------------
consensus_6478#1 ------------------------------------------------------------
consensus_6478#0 GAAAACGAGGTCAGGCAAAACCACACGCGATTCCAAAACGTTCAATTGGGTTGTGTATTG 180
consensus_6478#2 ------------------------------------------------------------
consensus_6478#1 ------------------------------------------------------------
consensus_6478#0 TAAAGTTGATTGATTTTAATTTCATCTTGCAGCGGAGATCGGTAGACTTTTAAGAAGCAC 240
consensus_6478#2 ------------------------------------------------------------
consensus_6478#1 ------AGAATCGCCCGAGGNTTTTTAAAGCACTTTTGTGTACAAAAAAGAAAACTTCAC 54
consensus_6478#0 ACATACACACTTTCGTTTGCATCACACAAACACACAGACACCAAAATATATTTGAAAAAG 300
consensus_6478#2 ------------------------------------------------------------
consensus_6478#1 TAAAACACGCCCATTTAACACACGAAAACGAGGTCAGGCAAAACCACACGCGATTCCAAA 114
consensus_6478#0 GTTAGAAAACCAGAGGTTGAATCCGTAGGAACAAGGCAAGCACAGGGAGAAGTCCGGTGC 360
consensus_6478#2 ------------------------------------------------------------
consensus_6478#1 ACGTTTCATATGGGTTGTGTATTGTAAAGTTGATTGATTTTAATTTCATCTTGCACCGGA 174
consensus_6478#0 ACGCATTATTTATCGGGAGCTCTGTGGCGCTCTGTGTGGAANAGTGTCGTAGGAAAATAA 420
consensus_6478#2 ------------------------------------------------------------
consensus_6478#1 GATCGGTAGACTCTTTCACAGAAGCACACATACACACTTTCGTTTGCATCACACAAACAC 234
consensus_6478#0 GGACGTAGTGCTATCGTTACTTATGGATTTAGCCACTACAGCCAGCAGCAGCAGCAGCAG 480
consensus_6478#2 ------------------------------------------------------------
consensus_6478#1 ACAGACACCAAAATATATTTGAAAAAGGTTAGAAAACCACGAGGTTGAATCCGTAGGAAC 294
consensus_6478#0 TAGCCAGGCAACCCACACCAACGACCCGCGAAACGGCAACAATAGCTTTACAGTTAATCT 540
consensus_6478#2 ------------------------------------------------------------
consensus_6478#1 AAGGCAAGCACAGGGAGAAGTCCGGTGCACGTATTATTTATCGGGAGCTCTGTGGCGCTC 354
consensus_6478#0 TCGCGAAAAGATTATGCCGGAGATTTAAGGA---ACAAACCGCGTATCTCTCCTGTTTCT 597
consensus_6478#2 ----------------CCGGA--TTTAAGGA---ACAACCGCCGTATCTCTCCTGTT-CT 38
consensus_6478#1 TGTGTGGAAAGTGTCGTAGGAACAATAAGGACGTAGAGCTATCGTTACTTATGGATTTAG 414
*** ****** * * *** ** **
consensus_6478#0 CCCTTGAC--ATGT-TCGGGCACA-AATACATTAA-------ACGTGATTAGATGGGGCA 646
consensus_6478#2 CCCTTGAC--TTGT-TCGG-CGCA-CAATAATTAA-------ACGTGATTAG-TGGG--A 83
consensus_6478#1 CCACTAGCAGCAGCATCAGCAGCAGCAGTAGCCAGGCCACCCACACAACGAC-CCGGCAA 473
** * * * ** * ** * * ** * * ** *
consensus_6478#0 TACGATAA-GGTTGTGTTAAACAAAGACCCCGTAGCAAGGAGCTCCT------TCTGCGT 699
consensus_6478#2 TACGATGA-AGT-GTGTTAA--AAAGACCCCGTAGAAAGGA-CTCCT------TCTGCGT 132
consensus_6478#1 AACGGNAACAATAGCTTTACAGTAAATCTTCGCGAAAAGATTATACCGGGAGATTTAAGG 533
*** * * * *** ** * ** *** * * * * *
consensus_6478#0 GGTTCCTCAATAATTCC-GAA----CCCCTATATTGGGCGACATGGC--GCGTAGT---- 748
consensus_6478#2 GGTAC-TCAATAATTCCCGAA----CCCCTGTATTGGCCGGCATGGCC-ACGTAGGTTGT 186
consensus_6478#1 AACAACGCCGTATCTCTCCTGTTCTCCCTTGACTTGTTCGGCGCCACCAAAATGANTTAA 593
* ** ** *** * *** ** * * *
consensus_6478#0 --CGTACGCCAAGAGAAGAAGAAGA-------------GAAGGTGTTAAAAGTGTGCGTT 793
consensus_6478#2 TACGCAAACAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGTGTTAAAAGTGTGCGTT 246
consensus_6478#1 AACGGTGGAATTAAGCTGGGGAATAC-ACGAAATAAAGGTGGTGNTTAANAAAGAGCCCC 652
** ** * *** * * * **** * * **
consensus_6478#0 GTAAAATTACGCCAAAATGTTGC-TGGTGGCCACCGCCACCGTCTCCCC----------A 842
consensus_6478#2 GTAAAATTACGCCAAAATGTTGC-TGGTGGCAACCGCCACCGTCCCCCCCCCCCCCCCAA 305
consensus_6478#1 GTAAGNCAAGGAACTCCCGTTCTGCGGTGGTTCCTCACATAAATTCCCGGAAACCCCT-- 710
**** * * *** ***** * ** ***
consensus_6478#0 AAAAAAAAGCCACCCCTCTTATCCATCCTCTATACTATACTATCCTTAGTA-GTA-GAAC 900
consensus_6478#2 AAAAAAAAGCCACCCCTCTTATCCATCCTCTATACTATACTATCCTTAGTA-GTA-GAAC 363
consensus_6478#1 ATAATTGGGCCGGCGATGGCCGACGGTAGGGTCGGTCAANCGNCCCCAGTACGCACGCAC 770
* ** *** * * * * * ** **** * * * **
consensus_6478#0 TATCGTGCGGTAATCAGTACGCAAATCCTGTTGTCCACGTACCGTTGGTGTAGTGATTTA 960
consensus_6478#2 TATCGTGCGGTAATCAGTACGCAAATCCTGTTGTCCACGTACCGTTGGTGTAGTGATTTA 423
consensus_6478#1 GACAGCNAGTCAGGTGGTAACAAGTGTGTGTTGTAAA-ATAACGCCAAAAT--TTGGTTG 827
* * * * *** * ****** * ** ** * * **
consensus_6478#0 GTTAGCA------------- 967
consensus_6478#2 GTTAGTAAC----------- 432
consensus_6478#1 ATTGGCACCCGCACGAGACC 847
** * *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||