These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6478#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 967 fasta sequence [TTTTGATAAGAGGATTAGTGCCTTCAGCTACGTTTCTCTGTCGTTCCTTT-AACGTTTTTAAATGCACTTTTGTGTAAAAAAAAAAATAAAACTTCACAAAAACACGCCCATTTAACACACGAAAACGAGGTCAGGCAAAACCACACGCGATTCCAAAACGTTCAATTGGGTTGTGTATTGTAAAGTTGATTGATTTTAATTTCATCTTGCAGCGGAGATCGGTAGACTTTTAAGAAGCACACATACACACTTTCGTTTGCATCACACAAACACACAGACACCAAAATATATTTGAAAAAGGTTAGAAAACCAGAGGTTGAATCCGTAGGAACAAGGCAAGCACAGGGAGAAGTCCGGTGCACGCATTATTTATCGGGAGCTCTGTGGCGCTCTGTGTGGAANAGTGTCGTAGGAAAATAAGGACGTAGTGCTATCGTTACTTATGGATTTAGCCACTA-CAGCCAGCAGCAGCAGCAGCAGTAGCCAGG-CAACCCACACCAACGACCCGCGAAACGGCAACAATAGCTTTACAGTTAATCTTCGCGAAAAGATTATGCCGGAGATTTAAGGAACAAACCG-CGTATCTCTCCTGTTTCTCCCTTGACATGTTCGG-GCACAAATACATTAAACGTGATTAGATGGGGCATACGATAAGGTTGTGTTAAACAAAGACCCCGTAGCAAGGAGCTCCTTCTGCGTGGTTCCTCAATAATT-CCGAACCCCTATATTGGGCGACATGG-CGCGTA-GTCG-TACGCCAAG-AGAAGAAGAAG-AGAAGGTGTTAAAAGTGTGCGTTGTAAAATTACGCCAAAATGTTGCTGGTGGCCACCGCCACCGTCTCCCCAAAAAAAAAGCCACCCCTCTTATCCATCCTCTATACTATACTATCCTTAGTAGTAGAACTATCGTGCGGTAATCAGTACGCAAATCCTGTTGTCCACGTACCGTTGGTGTAGTGATTTAGTTAGCA] [-] EMBL AGESTS1T7 [TTTTGATAAGAGGATTAGTGCCTTCAGCTACGTTTCTCTGTCGTTCCTTT AACGTTTTTAAATGCACTTTTGTGTAAA ] [+] EMBL AL693699 [ ccgagGCTTTCAGCTACGTTTCTCTGTCGTTCCTTTAAATGTTTTTAAATGCACTTTTGTGTAAAAAAAAAAATAAAACTTCACAAAAACACGCCCATTTAACACACGAAAACGAGGTCAGGCAAAACCACACGCGATTCCAAAACGTTCAATTGGGTTGTGTATTGTAAAGTTGATTGATTTTAATTTCATCTTGCAGCGGAGATCGGTAGACTTTTAAGAAGCACACATACACACTTTCGTTTGCATCACACAAACACACAGACACCAAAATATATTTGAAAAAGGTTAGAAAACCAGAGGTTGAATCCGTAGGAACAAGGCAAGCACAGGGAGAAGTCCGGTGCACGCATTATTTATCGGGAGCTCTGTGGCGCTCTGTGTGGAANAGTGTCGTAGGAAAATAAGGACGTAGTGCTATCGTTACTTATGGATTTAGCCACTA CAGCCAGCAGCAGCAGCAGCAGTAGCCAGG CAACCCACACCAACGACCCGCGAAACGGCAACAATAGCTTTACAGTTAATCTTCGCGAAAAGATTATGCCGGAGATTTAAGGAACAAACCG CGTATCTCTCCTGTTTCTCCCTTGACATGTTCGG GCACAAATACATTAAACGTGATTAGATGGGGCATACGATAAGGTTGTGTTAAACAAAGACCCCGTAGCAAGGAGCTCCTTCTGCGTGGTTCCTCAATAATT CCGAACCCCTATATTGGGCGACATGG CGCGTA GTCG TACGCCAAG AGAAGAAGAAG AGAAGGTGTT ] [+] EMBL BX626259 [ AAGCACAGGGAGAAGTCCGGTGCACGCATTATTTATCGGGAGCTCTGTGGCGCTCTGTGTGGAA AGTGTCGTAGGAAAATAAGGACGTAGTGCTATCGTTACTTATGGATTTAGCCACTAGCAG CAGCAGCAGCAGCAGCAGTAGCCAGGCCACCCCACACCAACGACCCGCGAAACGGCAACAATAGCTTTACAGTTAATCTTCGCGAAAAGATTATGCCGGAGATTTAAGGAAC AACCGCCGTATCTCTCCTG TTCTCCCTTGACATGTTCGGCGCAC AATA ATTAAACGTGATTAG TGGG ATACGATAAGG TGTGTTAA AAAGACCCCGTAGCAAGGA CTCCTTCTGCGTGGTT CTCAATAATTCCCGAACCCCTATATTGGCCGACATGGCCGCGTAGGTCGTTACGCCAAGAAGAAGAAGAAGAAGAAGGTGTTAAAAGTGTGCGTTGTAAAATTACGCCAAAATGTTGCTGGTGGCCACCGCCACCGTCTCCCCAAAAAAAAAGCCACCCCTCTTATCCATCCTCTATACTATACTATCCTTAGTAGTAGAACTATCGTGCGGTAATCAGTACGCAAATCCTGTTGTCCACGTACCGTTGGTGTAGTGATTTAGTTAGCA] consensusID : consensus_6478#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 847 fasta sequence [AGAATCGCCCGAGGNTTTTTAAAGCACTTTTGTGTACAAAAAAGAAAACTTCACTAAAACACGCCCATTTAACACACGAAAACGAGGTCAGGCAAAACCACACGCGATTCCAAAACGTTTCATATGGGTTGTGTATTGTAAAGTTGATTGATTTTAATTTCATCTTGCACCGGAGATCGGTAGACTCTTTCACAGAAGCACACATACACACTTTCGTTTGCATCACACAAACACACAGACACCAAAATATATTTGAAAAAGGTTAGAAAACCACGAGGTTGAATCCGTAGGAACAAGGCAAGCACAGGGAGAAGTCCGGTGCACGTATTATTTATCGGGAGCTCTGTGGCGCTCTGTGTGGAAAGTGTCGTAGGAACAATAAGGACGTAGAGCTATCGTTACTTATGGATTTAGCCACTAGCAGCAGCATCAGCAGCAGCAGTAGCCAGGCCACCCACACAACGACCCGGCAAAACGGNAACAATAGCTTTACAGTAAATCTTCGCGAAAAGATTATACCGGGAGATTTAAGGAACAACGCCGTATCTCTCCTGTTCTCCCTTGACTTGTTCGGCGCCACCAAAATGANTTAAAACGGTGGAATTAAGCTGGGGAATACACGAAATAAAGGTGGTGNTTAANAAAGAGCCCCGTAAGNCAAGGAACTCCCGTTCTGCGGTGGTTCCTCACATAAATTCCCGGAAACCCCTATAATTGGGCCGGCGATGGCCGACGGTAGGGTCGGTCAANCGNCCCCAGTACGCACGCACGACAGCNAGTCAGGTGGTAACAAGTGTGTGTTGTAAAATAACGCCAAAATTTGGTTGATTGGCACCCGCACGAGACC] [+] EMBL AL932699 [AGAATCGCCCGAGGNTTTTTAAAGCACTTTTGTGTACAAAAAAGAAAACTTCACTAAAACACGCCCATTTAACACACGAAAACGAGGTCAGGCAAAACCACACGCGATTCCAAAACGTTTCATATGGGTTGTGTATTGTAAAGTTGATTGATTTTAATTTCATCTTGCACCGGAGATCGGTAGACTCTTTCACAGAAGCACACATACACACTTTCGTTTGCATCACACAAACACACAGACACCAAAATATATTTGAAAAAGGTTAGAAAACCACGAGGTTGAATCCGTAGGAACAAGGCAAGCACAGGGAGAAGTCCGGTGCACGTATTATTTATCGGGAGCTCTGTGGCGCTCTGTGTGGAAAGTGTCGTAGGAACAATAAGGACGTAGAGCTATCGTTACTTATGGATTTAGCCACTAGCAGCAGCATCAGCAGCAGCAGTAGCCAGGCCACCCACACAACGACCCGGCAAAACGGNAACAATAGCTTTACAGTAAATCTTCGCGAAAAGATTATACCGGGAGATTTAAGGAACAACGCCGTATCTCTCCTGTTCTCCCTTGACTTGTTCGGCGCCACCAAAATGANTTAAAACGGTGGAATTAAGCTGGGGAATACACGAAATAAAGGTGGTGNTTAANAAAGAGCCCCGTAAGNCAAGGAACTCCCGTTCTGCGGTGGTTCCTCACATAAATTCCCGGAAACCCCTATAATTGGGCCGGCGATGGCCGACGGTAGGGTCGGTCAANCGNCCCCAGTACGCACGCACGACAGCNAGTCAGGTGGTAACAAGTGTGTGTTGTAAAATAACGCCAAAATTTGGTTGATTGGCACCCGCACGAGACC] consensusID : consensus_6478#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 432 fasta sequence [CCGGATTTAAGGAACAACCGCCGTATCTCTCCTGTTCTCCCTTGACTTGTTCGGCGCACAATAATTAAACGTGATTAGTGGGATACGATGAAGTGTGTTAAAAAGACCCCGTAGAAAGGACTCCTTCTGCGTGGTACTCAATAATTCCCGAACCCCTGTATTGGCCGGCATGGCCACGTAGGTTGTTACGCAAACAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGTGTTAAAAGTGTGCGTTGTAAAATTACGCCAAAATGTTGCTGGTGGCAACCGCCACCGTCCCCCCCCCCCCCCCAAAAAAAAAAGCCACCCCTCTTATCCATCCTCTATACTATACTATCCTTAGTAGTAGAACTATCGTGCGGTAATCAGTACGCAAATCCTGTTGTCCACGTACCGTTGGTGTAGTGATTTAGTTAGTAAC] [+] EMBL BM651332 [CCGGATTTAAGGAACAACCGCCGTATCTCTCCTGTTCTCCCTTGACTTGTTCGGCGCACAATAATTAAACGTGATTAGTGGGATACGATGAAGTGTGTTAAAAAGACCCCGTAGAAAGGACTCCTTCTGCGTGGTACTCAATAATTCCCGAACCCCTGTATTGGCCGGCATGGCCACGTAGGTTGTTACGCAAACAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGTGTTAAAAGTGTGCGTTGTAAAATTACGCCAAAATGTTGCTGGTGGCAACCGCCACCGTCCCCCCCCCCCCCCCAAAAAAAAAAGCCACCCCTCTTATCCATCCTCTATACTATACTATCCTTAGTAGTAGAACTATCGTGCGGTAATCAGTACGCAAATCCTGTTGTCCACGTACCGTTGGTGTAGTGATTTAGTTAGTAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6478#0 TTTTGATAAGAGGATTAGTGCCTTCAGCTACGTTTCTCTGTCGTTCCTTTAACGTTTTTA 60 consensus_6478#2 ------------------------------------------------------------ consensus_6478#1 ------------------------------------------------------------ consensus_6478#0 AATGCACTTTTGTGTAAAAAAAAAAATAAAACTTCACAAAAACACGCCCATTTAACACAC 120 consensus_6478#2 ------------------------------------------------------------ consensus_6478#1 ------------------------------------------------------------ consensus_6478#0 GAAAACGAGGTCAGGCAAAACCACACGCGATTCCAAAACGTTCAATTGGGTTGTGTATTG 180 consensus_6478#2 ------------------------------------------------------------ consensus_6478#1 ------------------------------------------------------------ consensus_6478#0 TAAAGTTGATTGATTTTAATTTCATCTTGCAGCGGAGATCGGTAGACTTTTAAGAAGCAC 240 consensus_6478#2 ------------------------------------------------------------ consensus_6478#1 ------AGAATCGCCCGAGGNTTTTTAAAGCACTTTTGTGTACAAAAAAGAAAACTTCAC 54 consensus_6478#0 ACATACACACTTTCGTTTGCATCACACAAACACACAGACACCAAAATATATTTGAAAAAG 300 consensus_6478#2 ------------------------------------------------------------ consensus_6478#1 TAAAACACGCCCATTTAACACACGAAAACGAGGTCAGGCAAAACCACACGCGATTCCAAA 114 consensus_6478#0 GTTAGAAAACCAGAGGTTGAATCCGTAGGAACAAGGCAAGCACAGGGAGAAGTCCGGTGC 360 consensus_6478#2 ------------------------------------------------------------ consensus_6478#1 ACGTTTCATATGGGTTGTGTATTGTAAAGTTGATTGATTTTAATTTCATCTTGCACCGGA 174 consensus_6478#0 ACGCATTATTTATCGGGAGCTCTGTGGCGCTCTGTGTGGAANAGTGTCGTAGGAAAATAA 420 consensus_6478#2 ------------------------------------------------------------ consensus_6478#1 GATCGGTAGACTCTTTCACAGAAGCACACATACACACTTTCGTTTGCATCACACAAACAC 234 consensus_6478#0 GGACGTAGTGCTATCGTTACTTATGGATTTAGCCACTACAGCCAGCAGCAGCAGCAGCAG 480 consensus_6478#2 ------------------------------------------------------------ consensus_6478#1 ACAGACACCAAAATATATTTGAAAAAGGTTAGAAAACCACGAGGTTGAATCCGTAGGAAC 294 consensus_6478#0 TAGCCAGGCAACCCACACCAACGACCCGCGAAACGGCAACAATAGCTTTACAGTTAATCT 540 consensus_6478#2 ------------------------------------------------------------ consensus_6478#1 AAGGCAAGCACAGGGAGAAGTCCGGTGCACGTATTATTTATCGGGAGCTCTGTGGCGCTC 354 consensus_6478#0 TCGCGAAAAGATTATGCCGGAGATTTAAGGA---ACAAACCGCGTATCTCTCCTGTTTCT 597 consensus_6478#2 ----------------CCGGA--TTTAAGGA---ACAACCGCCGTATCTCTCCTGTT-CT 38 consensus_6478#1 TGTGTGGAAAGTGTCGTAGGAACAATAAGGACGTAGAGCTATCGTTACTTATGGATTTAG 414 *** ****** * * *** ** ** consensus_6478#0 CCCTTGAC--ATGT-TCGGGCACA-AATACATTAA-------ACGTGATTAGATGGGGCA 646 consensus_6478#2 CCCTTGAC--TTGT-TCGG-CGCA-CAATAATTAA-------ACGTGATTAG-TGGG--A 83 consensus_6478#1 CCACTAGCAGCAGCATCAGCAGCAGCAGTAGCCAGGCCACCCACACAACGAC-CCGGCAA 473 ** * * * ** * ** * * ** * * ** * consensus_6478#0 TACGATAA-GGTTGTGTTAAACAAAGACCCCGTAGCAAGGAGCTCCT------TCTGCGT 699 consensus_6478#2 TACGATGA-AGT-GTGTTAA--AAAGACCCCGTAGAAAGGA-CTCCT------TCTGCGT 132 consensus_6478#1 AACGGNAACAATAGCTTTACAGTAAATCTTCGCGAAAAGATTATACCGGGAGATTTAAGG 533 *** * * * *** ** * ** *** * * * * * consensus_6478#0 GGTTCCTCAATAATTCC-GAA----CCCCTATATTGGGCGACATGGC--GCGTAGT---- 748 consensus_6478#2 GGTAC-TCAATAATTCCCGAA----CCCCTGTATTGGCCGGCATGGCC-ACGTAGGTTGT 186 consensus_6478#1 AACAACGCCGTATCTCTCCTGTTCTCCCTTGACTTGTTCGGCGCCACCAAAATGANTTAA 593 * ** ** *** * *** ** * * * consensus_6478#0 --CGTACGCCAAGAGAAGAAGAAGA-------------GAAGGTGTTAAAAGTGTGCGTT 793 consensus_6478#2 TACGCAAACAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGTGTTAAAAGTGTGCGTT 246 consensus_6478#1 AACGGTGGAATTAAGCTGGGGAATAC-ACGAAATAAAGGTGGTGNTTAANAAAGAGCCCC 652 ** ** * *** * * * **** * * ** consensus_6478#0 GTAAAATTACGCCAAAATGTTGC-TGGTGGCCACCGCCACCGTCTCCCC----------A 842 consensus_6478#2 GTAAAATTACGCCAAAATGTTGC-TGGTGGCAACCGCCACCGTCCCCCCCCCCCCCCCAA 305 consensus_6478#1 GTAAGNCAAGGAACTCCCGTTCTGCGGTGGTTCCTCACATAAATTCCCGGAAACCCCT-- 710 **** * * *** ***** * ** *** consensus_6478#0 AAAAAAAAGCCACCCCTCTTATCCATCCTCTATACTATACTATCCTTAGTA-GTA-GAAC 900 consensus_6478#2 AAAAAAAAGCCACCCCTCTTATCCATCCTCTATACTATACTATCCTTAGTA-GTA-GAAC 363 consensus_6478#1 ATAATTGGGCCGGCGATGGCCGACGGTAGGGTCGGTCAANCGNCCCCAGTACGCACGCAC 770 * ** *** * * * * * ** **** * * * ** consensus_6478#0 TATCGTGCGGTAATCAGTACGCAAATCCTGTTGTCCACGTACCGTTGGTGTAGTGATTTA 960 consensus_6478#2 TATCGTGCGGTAATCAGTACGCAAATCCTGTTGTCCACGTACCGTTGGTGTAGTGATTTA 423 consensus_6478#1 GACAGCNAGTCAGGTGGTAACAAGTGTGTGTTGTAAA-ATAACGCCAAAAT--TTGGTTG 827 * * * * *** * ****** * ** ** * * ** consensus_6478#0 GTTAGCA------------- 967 consensus_6478#2 GTTAGTAAC----------- 432 consensus_6478#1 ATTGGCACCCGCACGAGACC 847 ** * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||