cluster # 6480

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Anopheles gambiae
cluster # 6480 cluster # 6480 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6480#0 length = 764 sequences # 1

consensus_6480#1 length = 611 sequences # 3
consensus_6480#2 length = 488 sequences # 1

consensusID : consensus_6480#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 764
fasta sequence

                              [CGATTTATTTAGTGATCAAAATAATACTTGAAACCACGCAATAAACACATCGGAGGAATTATCTATATATTGCACCGCGTTTTTTTGGGGCTGAGATTCCGGTCCGGTAGTGTTTGTGTGTTTTGTGCAGCAATTGGTATCACAGATCGGTTCTAAAGATCGGTCTCGTAAGTTTTGTGAGGGAATGGTTCTCGATGATGTAAAATAATAAGCTTTAGCTAACTAAATCTACTTGTAAGTCTTGCACTACTAATACTAATACATCTCTCTCTCTCTCTCTCTGTCGCTCTCTTAGTGTAAGAGGGATTAAAAATTAATGGCAGTATCGTTTGTGTGATCGTGCACATGATTAAGGACGGATGTGTGTAAAAAATGTGTCTTTTTCCCCCACTAAAATGGCAATGATAGTATGGTAAGGGAGGAAAGGTAGTTCGTTGTTTCGTTCGTTGGCACATGTTAGTGGATGGAGGGGGTTATTTATATCGGTTTGGTAACTATTCCCGTACCCTTAGCTTACCATTACCATACTACTTTCTCAGCTTCATCTGACTGATCATGGCCGTACCGTGGTCGGGCTGGATCTGCTGCTTGTACTCGGCAACGCACGTCGCGGTGAGCGATTTCGCCCGGGGGCCGCTGGTAGCACGCATTGTCGTAGCACCGTTCCAGCTCCTGGATGAACTCCATGATCAGCTTCCCATTGCCACCGTTCGGGCCGACGTATAGTCGCACTGGTACGAGTATCGCTTCATGTCCCGGATGCA]

[+] EMBL CNS08QTV             [CGATTTATTTAGTGATCAAAATAATACTTGAAACCACGCAATAAACACATCGGAGGAATTATCTATATATTGCACCGCGTTTTTTTGGGGCTGAGATTCCGGTCCGGTAGTGTTTGTGTGTTTTGTGCAGCAATTGGTATCACAGATCGGTTCTAAAGATCGGTCTCGTAAGTTTTGTGAGGGAATGGTTCTCGATGATGTAAAATAATAAGCTTTAGCTAACTAAATCTACTTGTAAGTCTTGCACTACTAATACTAATACATCTCTCTCTCTCTCTCTCTGTCGCTCTCTTAGTGTAAGAGGGATTAAAAATTAATGGCAGTATCGTTTGTGTGATCGTGCACATGATTAAGGACGGATGTGTGTAAAAAATGTGTCTTTTTCCCCCACTAAAATGGCAATGATAGTATGGTAAGGGAGGAAAGGTAGTTCGTTGTTTCGTTCGTTGGCACATGTTAGTGGATGGAGGGGGTTATTTATATCGGTTTGGTAACTATTCCCGTACCCTTAGCTTACCATTACCATACTACTTTCTCAGCTTCATCTGACTGATCATGGCCGTACCGTGGTCGGGCTGGATCTGCTGCTTGTACTCGGCAACGCACGTCGCGGTGAGCGATTTCGCCCGGGGGCCGCTGGTAGCACGCATTGTCGTAGCACCGTTCCAGCTCCTGGATGAACTCCATGATCAGCTTCCCATTGCCACCGTTCGGGCCGACGTATAGTCGCACTGGTACGAGTATCGCTTCATGTCCCGGATGCA]




>consensus_6480#0
CGATTTATTTAGTGATCAAAATAATACTTGAAACCACGCAATAAACACATCGGAGGAATT
ATCTATATATTGCACCGCGTTTTTTTGGGGCTGAGATTCCGGTCCGGTAGTGTTTGTGTG
TTTTGTGCAGCAATTGGTATCACAGATCGGTTCTAAAGATCGGTCTCGTAAGTTTTGTGA
GGGAATGGTTCTCGATGATGTAAAATAATAAGCTTTAGCTAACTAAATCTACTTGTAAGT
CTTGCACTACTAATACTAATACATCTCTCTCTCTCTCTCTCTGTCGCTCTCTTAGTGTAA
GAGGGATTAAAAATTAATGGCAGTATCGTTTGTGTGATCGTGCACATGATTAAGGACGGA
TGTGTGTAAAAAATGTGTCTTTTTCCCCCACTAAAATGGCAATGATAGTATGGTAAGGGA
GGAAAGGTAGTTCGTTGTTTCGTTCGTTGGCACATGTTAGTGGATGGAGGGGGTTATTTA
TATCGGTTTGGTAACTATTCCCGTACCCTTAGCTTACCATTACCATACTACTTTCTCAGC
TTCATCTGACTGATCATGGCCGTACCGTGGTCGGGCTGGATCTGCTGCTTGTACTCGGCA
ACGCACGTCGCGGTGAGCGATTTCGCCCGGGGGCCGCTGGTAGCACGCATTGTCGTAGCA
CCGTTCCAGCTCCTGGATGAACTCCATGATCAGCTTCCCATTGCCACCGTTCGGGCCGAC
GTATAGTCGCACTGGTACGAGTATCGCTTCATGTCCCGGATGCA

consensusID : consensus_6480#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 611
fasta sequence

                              [GCACATGCCTGCCTTTTTTTTANTTTTTTTTATAGGTAATTCCTCCGATGTGTTTATTGCGTGGTTTCAAGTATTATTTTGATCACTAAATAAATCGCTTGCATAGTAGCAATCTGAACAACGGCAAGGAGTTTCATATTTGGTAGTGGCAAAAGATAGGATAAAAATGGAAAAATATAACGCATTATGGTGTTTGTGCGTGCGTATGCGCTTTAAAGGAGATTCGCTTCCGCCTCAGCGCTGCCGCTGCTCTTCGCACGCAAACGCTCCTGCTCGTCCCGCTCCAGCAACTGTTTGTACGGCAAATGTTCGTCCTTAATGATGGTGAAGGAATCGATGACAGCACCCTCCTTGTCGACGGAAATTTGCTCAAAGTACAGATGCGATCCATTGATCGCCTTCATGCGCGTGTAGCCATAGTCGCGGCTTGTGAATTTTCCGGGCACTCCAGGGTCGGGGGGTTCATTTTGTTAGATGAACGGCTCTCGCCCCTCCTTGCACCCAGCCGAACCGGTGACGAGGTGTACGGGGGCACGGGGATTACGGTACGGTTCCTCGTACGAACCATTGTACACCTTGTAGTCGTAGATCGGAAACAGCCGCTCGTACGA]

[+] EMBL BX466705             [GCACATGCCTGCCTTTTTTTTANTTTTTTTTATAGGTAATTCCTCCGATGTGTTTATTGCGTGGTTTCAAGTATTATTTTGATCACTAAATAAATCGCTTGCATAGTAGCAATCTGAACAACGGCAAGGAGTTTCATATTTGGTAGTGGCAAAAGATAGGATAAAAATGGAAAAATATAACGCATTATGGTGTTTGTGCGTGCGTATGCGCTTTAAAGGAGATTCGCTTCCGCCTCAGCGCTGCCGCTGCTCTTCGCACGCAAACGCTCCTGCTCGTCCCGCTCCAGCAACTGTTTGTACGGCAAATGTTCGTCCTTAATGATGGTGAAGGAATCGATGACAGCACCCTCCTTGTCGACGGAAATTTGCTCAAAGTACAGATGCGATCCATTGATCGCCTTCATGCGCGTGTAGCCATAGTCGCGGCTTGTGAATTTTCCGGGCACTCCAGGGTCGGGGGGTTCATTTTGTTAGATGAACGGCTCTCGCCCCTCCTTGCACCCAGCCGAACCGGTGACGAGGTGTACGGGGGCACGGGGATTACGGTACGGTTCCTCGTACGAACCATTGTACACCTTGTAGTCGTAGATCGGAAACAGCCGCTCGTACGA]
[-] EMBL BX623038             [                                   GTAATTCCTCCGATGTGTTTATTGCGTGGTTTCAAGTATTATTTTGATCACTAAATAAATCGCTTGCATAGTAGCAATCTGAACAACGGCAAGGAGTTTCATATTTGGTAGTGGCAAAAGATAGGATAAAAATGGAAAAATATAACGCATTATGGTGTTTGTGCGTGCGTATGCGCTTTAAAGGAGATTCGCTTCCGCCTCAGCGCTGCCGCTGCTCTTCGCACGCAAACGCTCCTGCTCGTCCCGCTCCAGCAACTGTTTGTACGGCAAATGTTCGTCCTTAATGATGGTGAAGGAATCGATGACAGCACCCTCCTTGTCGACGGAAATTTGCTCAAAGTACAGATGCGATCCATTGATCGCCTTCATGCGCGTGTAGC                                                                                                                                                                                                    ]
[+] EMBL AGA283447            [                                                                                                                                     tttttTTTGGTAGTGGCAAAAGATAGGATAAAAATGGAAAAATATAACGCATTATGGTGTTTGTGCGTGCGTATGCGCTTTAAAGGAGATTCGCTTCCGCCTCAGCGCTGCCGCTGCTCTTCGCACGCAAACGCTCCTGCTCGTCCCGCTCCAGCAACTGTTTGTACGGCAAATGTTCGTCCTTAATGATGGTGAAGGAATCGATGACAGCACCCTCCTTGTCGACGGAAATTTGCTCAAAGTACAGATGCGATTCATTGATCGCCTTCATGCGCG                                                                                                                                                                                                          ]




>consensus_6480#1
GCACATGCCTGCCTTTTTTTTANTTTTTTTTATAGGTAATTCCTCCGATGTGTTTATTGC
GTGGTTTCAAGTATTATTTTGATCACTAAATAAATCGCTTGCATAGTAGCAATCTGAACA
ACGGCAAGGAGTTTCATATTTGGTAGTGGCAAAAGATAGGATAAAAATGGAAAAATATAA
CGCATTATGGTGTTTGTGCGTGCGTATGCGCTTTAAAGGAGATTCGCTTCCGCCTCAGCG
CTGCCGCTGCTCTTCGCACGCAAACGCTCCTGCTCGTCCCGCTCCAGCAACTGTTTGTAC
GGCAAATGTTCGTCCTTAATGATGGTGAAGGAATCGATGACAGCACCCTCCTTGTCGACG
GAAATTTGCTCAAAGTACAGATGCGATCCATTGATCGCCTTCATGCGCGTGTAGCCATAG
TCGCGGCTTGTGAATTTTCCGGGCACTCCAGGGTCGGGGGGTTCATTTTGTTAGATGAAC
GGCTCTCGCCCCTCCTTGCACCCAGCCGAACCGGTGACGAGGTGTACGGGGGCACGGGGA
TTACGGTACGGTTCCTCGTACGAACCATTGTACACCTTGTAGTCGTAGATCGGAAACAGC
CGCTCGTACGA

consensusID : consensus_6480#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 488
fasta sequence

                              [TGGTTTCAAGTATTATTTTGATCACTAAATAAATCGCTTGCATAGTAGCAATCTGAACATCGGCCAGGAATTTCATATTTGGTAGTGGCAAAAGATAGGATAAAAGTGGAAAAATATAACGCATGATGGTGTTTGTGTGTGCGTATGCGCTTTAAAGGAGATTCGCTTCCGCCTCAGCGCCGCCGCTGCTCTTCGCACGCAAACGCTCTTGCTCGTCCCGCTCCAGCAACTGTTTGTACGGCAAATGTTCGTCCTTTATGATGGTGAAGGAATCGATGACCGCACCCTCCTTGTCGACGGAAATTTGCTCAAAGTACAGATGCGATCCATTGATCGCCTTCATGCGCGTGTAGCCATAGTCGCGGCTGTGAATCGCACTCCAGGTTGGTATTTTGTTGATGAACGGCTCCCGTCCCTCCTTGCACCCAGCCGAACCGGTGACGAGGTGTACGGGGGCACGGGGATTACGGTACGGTTCCTCGTACCGG]

[-] EMBL BM646249             [TGGTTTCAAGTATTATTTTGATCACTAAATAAATCGCTTGCATAGTAGCAATCTGAACATCGGCCAGGAATTTCATATTTGGTAGTGGCAAAAGATAGGATAAAAGTGGAAAAATATAACGCATGATGGTGTTTGTGTGTGCGTATGCGCTTTAAAGGAGATTCGCTTCCGCCTCAGCGCCGCCGCTGCTCTTCGCACGCAAACGCTCTTGCTCGTCCCGCTCCAGCAACTGTTTGTACGGCAAATGTTCGTCCTTTATGATGGTGAAGGAATCGATGACCGCACCCTCCTTGTCGACGGAAATTTGCTCAAAGTACAGATGCGATCCATTGATCGCCTTCATGCGCGTGTAGCCATAGTCGCGGCTGTGAATCGCACTCCAGGTTGGTATTTTGTTGATGAACGGCTCCCGTCCCTCCTTGCACCCAGCCGAACCGGTGACGAGGTGTACGGGGGCACGGGGATTACGGTACGGTTCCTCGTACCGG]




>consensus_6480#2
TGGTTTCAAGTATTATTTTGATCACTAAATAAATCGCTTGCATAGTAGCAATCTGAACAT
CGGCCAGGAATTTCATATTTGGTAGTGGCAAAAGATAGGATAAAAGTGGAAAAATATAAC
GCATGATGGTGTTTGTGTGTGCGTATGCGCTTTAAAGGAGATTCGCTTCCGCCTCAGCGC
CGCCGCTGCTCTTCGCACGCAAACGCTCTTGCTCGTCCCGCTCCAGCAACTGTTTGTACG
GCAAATGTTCGTCCTTTATGATGGTGAAGGAATCGATGACCGCACCCTCCTTGTCGACGG
AAATTTGCTCAAAGTACAGATGCGATCCATTGATCGCCTTCATGCGCGTGTAGCCATAGT
CGCGGCTGTGAATCGCACTCCAGGTTGGTATTTTGTTGATGAACGGCTCCCGTCCCTCCT
TGCACCCAGCCGAACCGGTGACGAGGTGTACGGGGGCACGGGGATTACGGTACGGTTCCT
CGTACCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6480#1      --------------------------------------GCACATGCCTGCCTTTTTTTTA 22
consensus_6480#2      ------------------------------------------------------------
consensus_6480#0      CGATTTATTTAGTGATCAAAATAATACTTGAAACCACGCAATAAACACATCGGAGGAATT 60
                                                                                  

consensus_6480#1      NTTTTTTTTATAGGTAATTCCTCCGATGTGTTTATTGCGTGGTTTCA-AGTATTATTTTG 81
consensus_6480#2      ---------------------------------------TGGTTTCA-AGTATTATTTTG 20
consensus_6480#0      ATCTATATATTGCACCGCGTTTTTTTGGGGCTGAGATTCCGGTCCGGTAGTGTTTGTGTG 120
                                                              ***     *** **  * **

consensus_6480#1      ATCACTAAATAAATCGCTTGCATAGTAGCAATCTGAACAACGGCAAGGAGTTTCATATTT 141
consensus_6480#2      ATCACTAAATAAATCGCTTGCATAGTAGCAATCTGAACATCGGCCAGGAATTTCATATTT 80
consensus_6480#0      TTTTGTGCAGCAATTGGTATCACAGATCGGTTCTAAAGATCGGTCTCGTAAGTTTTGTGA 180
                       *   *  *  *** * *  ** **      *** ** * ***    *    *  * *  

consensus_6480#1      GGTAGTGGCAAAAGATAGGATAAAAATGGAAAAATATAACGCATTATGGTGTTTGTGCGT 201
consensus_6480#2      GGTAGTGGCAAAAGATAGGATAAAAGTGGAAAAATATAACGCATGATGGTGTTTGTGTGT 140
consensus_6480#0      GGGAATGGTTCTCGATGATGTAAAA-TAATAAGCTTTAGCTAACTA-AATCTACTTGTAA 238
                      ** * ***     ***    ***** *   **  * ** *  *  *   * *   **   

consensus_6480#1      GCGTATGCGCT-TTAAAGGAGATTCGCTTCCGCCTCAGCGCTGCCGCTGCTCTTCGCACG 260
consensus_6480#2      GCGTATGCGCT-TTAAAGGAGATTCGCTTCCGCCTCAGCGCCGCCGCTGCTCTTCGCACG 199
consensus_6480#0      GTCT-TGCACTACTAATACTAATACATCTCTCTCTCTCTCTCTCTGTCGCTCTCTTAGTG 297
                      *  * *** **  ***     ** *   **   ***       * *  *****      *

consensus_6480#1      CAAACGCTCCTGCTCGTC--CCGCTCCAGCAACTGTTTGTACG-GCAAATGTTCGTCCTT 317
consensus_6480#2      CAAACGCTCTTGCTCGTC--CCGCTCCAGCAACTGTTTGTACG-GCAAATGTTCGTCCTT 256
consensus_6480#0      TAAGAGGGATTAAAAATTAATGGCAGTATCGTTTGTGTGATCGTGCACATGATTAAGGAC 357
                       **  *    *     *     **   * *   *** **  ** *** *** *       

consensus_6480#1      AATGATGGTGAAGGAATCGATGACAGCACCCTCCT----TGTCGACGGAAATTTGCTCAA 373
consensus_6480#2      TATGATGGTGAAGGAATCGATGACCGCACCCTCCT----TGTCGACGGAAATTTGCTCAA 312
consensus_6480#0      GGATGTGTGTAAAAAATGTGTCTTTTTCCCCCACTAAAATGGCAATGATAGTATGGTAAG 417
                           **   **  ***   *       ***  **    ** * * *  * * ** * * 

consensus_6480#1      AGTACAGATGCGATCCATTGAT-----CGCCTTCATGCGCGTGTAGCCATAGTCG----- 423
consensus_6480#2      AGTACAGATGCGATCCATTGAT-----CGCCTTCATGCGCGTGTAGCCATAGTCG----- 362
consensus_6480#0      GGAGGAAAGGTAGTTCGTTGTTTCGTTCGTTGGCACATGTTAGTGGATGGAGGGGGTTAT 477
                       *   * * *   * * *** *     **    **   *   ** *    **  *     

consensus_6480#1      ------CGGCTTGTGAATTTTCCGGGCACTCCAGGGTCGGGGGGTTCATTTTGTTAGATG 477
consensus_6480#2      ------CGGCT-GTGAATC------GCACTCCAGGTTGG-------TATTTTGTT-GATG 401
consensus_6480#0      TTATATCGGTTTGGTAACTATTCCCGTACCCTTAGCTTACCATTACCATACTACTTTCTC 537
                            *** * *  **        * ** *   * *          **  *  *   * 

consensus_6480#1      AACGGCTCTCGCCCCTCCTTG----CACC-CAGCCGAACCGGTGACGAGG--TGTACGGG 530
consensus_6480#2      AACGGCTCCCGTCCCTCCTTG----CACC-CAGCCGAACCGGTGACGAGG--TGTACGGG 454
consensus_6480#0      AGCTTCATCTGACTGATCATGGCCGTACCGTGGTCGGGCTGGATCTGCTGCTTGTACTCG 597
                      * *  *    * *    * **     ***   * **  * **    *  *  *****  *

consensus_6480#1      GGCACGGGGATTACGGTA--CGGTTCCTCGTACGAACCATTG-TACACCTTGTAGTCGTA 587
consensus_6480#2      GGCACGGGGATTACGGTA--CGGTTCCTCGTACCGG------------------------ 488
consensus_6480#0      GCAACGCACGTCGCGGTGAGCGATTTCGCCCGGGGGCCGCTGGTAGCACGCATTGTCGTA 657
                      *  ***    *  ****   ** ** * *                               

consensus_6480#1      GATCGGAAACAGCCGCTCGTACGA------------------------------------ 611
consensus_6480#2      ------------------------------------------------------------
consensus_6480#0      GCACCGTTCCAGCTCCTGGATGAACTCCATGATCAGCTTCCCATTGCCACCGTTCGGGCC 717
                                                                                  

consensus_6480#1      -----------------------------------------------
consensus_6480#2      -----------------------------------------------
consensus_6480#0      GACGTATAGTCGCACTGGTACGAGTATCGCTTCATGTCCCGGATGCA 764