cluster # 6482

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Anopheles gambiae
cluster # 6482 cluster # 6482 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6482#0 length = 839 sequences # 4

consensus_6482#1 length = 706 sequences # 1

consensusID : consensus_6482#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 839
fasta sequence

                              [GGCAAGAAATCGGCACGATGAGAAATGCTGATTTGACGAGCACTTCGACAAATTGAAAGAGCTGAACAGCAAGCTGGAAGACCAGAGCCTGCGCATGTCGGACGACACGCTGAACGATATTGTGCGGTACGCGGGCGAGGTAATGACGTGCGGCGAGCAAAACTCCGCCTGCCTGACCGCGCTCAAGTTCCTCTACACGACCTGGCCGACGGAGAAGCTGTTCCCGATCATGGACATTACGCGGCTGAT-CGTGCGC-GAACCGCGCGCCTGCCAGGAGCTGTTCGAGGACGCCTCCTTCATGGGTACGTTCCTGC-AGCACACGAACCATCT-GCCCGC-GAACCAGCTCATGTCGGCCCGGTGCTTCACGAACATGCTGGCCCACCAGCCCGGCCGCAACGTGGTGGTGGAGCACATTCGCGCCATCGTCGATCGGTTCGCGGTGCTGCGCGGCAGCGCCTGCAGCCCGAACCTGCAGATCGCGCTGGCCAGCTTCTATCTCAACCTGACGATGACGCAGCTGGACAAACTGTCCTCGGTCGATTTTTGTAAGGTGCTTGCCGGAACTATCGGCGAGCTGCTGTGCTGGCTGACGGACAATGAGGCGACGTACCGCGGGTATCAGGCGCTGGGCAATCTGCTGAGCATGCCGGGCCCGGGCATGGGTGCGATCGCCGACACGCTCAAGGGGAACAGTGCCCTCACGGACAAGATACTGTTCAACATTAGCAGCGAGCTGCCGAACTTCGGGAAGCTAAACGAATGTGCCAGCTACCTGTACGAGCTGTTGGTGTGAGGCGGCGAGAGCGTTCAACTCATGGACTGCTTTGAACTGCGGAAGG]

[+] EMBL BX468136             [GGCAAGAAATCGGCACGATGAGAAATGCTGATTTGACGAGCACTTCGACAAATTGAAAGAGCTGAACAGCAAGCTGGAAGACCAGAGCCTGCGCATGTCGGACGACACGCTGAACGATATTGTGCGGTACGCGGGCGAGGTAATGACGTGCGGCGAGCAAAACTCCGCCTGCCTGACCGCGCTCAAGTTCCTCTACACGACCTGGCCGACGGAGAAGCTGTTCCCGATCATGGACATTACGCGGCTGATACGTGCGCGGAACCGGGCGCCTGCCAGGAGCTGTTCGAGGACGCCTCCTTCATGGGTACGTTCCTGCNAGNACACGAACCATCTGGCCCGCGGAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BM576531             [                                                                                               ccgCGGACGACACGCTGAACGATATTGTGCGGTACGCGGGCGAGGTAATGACGTGCGGCGAGCAAAACTCCGCCTGCCTGACCGCGCTCAAGTTCCTCTACACGACCTGGCCGACGGAGAAGCTGTTCCCGATCATGGACATTACGCGGCTGAT CGTGCGC GAACCGCGCGCCTGCCAGGAGCTGTTCGAGGACGCCTCCTTCATGGGTACGTTCCTGC AGCACACGAACCATCT GCCCGC GAACCAGCTCATGTCGGCCCGGTGCTTCACGAACATGCTGGCCCACCAGCCCGGCCGCAACGTGGTGGTGGAGCACATTCGCGCCATCGTCGATCGGTTCGCGGTGCTGCGCGGCAGCGCCTGCAGCCCGAACCTGCAGATCGCGCTGGCCAGCTTCTATCTCAACCTGACGATGACGCAGCTGGACAAACTGTCCTCGGTCGATTTTTGTAAGGTGCTTGCCGGAACTATCGGCGAGCTGCTGTGCTGGCTGACGGACAATGAGGCGACGTACCGCGGGTATCAGGCGCTGGGCAATCTGCTGAGCATGCCGGGCCCGGGCATGGGTGCGATCGCCGACACGCTCAAGGGGAACAGTGCCCTCACGGACAAGATACTGTTCAACATTAGCAGCGAGCTG                                                                                                       ]
[+] EMBL BX618516             [                                                                                                       GACACGCTGAACGATATTGTGCGGTACGCGGGCGAGGTAATGACGTGCGGCGAGCAAAACTCCGCCTGCCTGACCGCGCTCAAGTTCCTCTACACGACCTGGCCGACGGAGAAGCTGTTCCCGATCATGGACATTACGCGGCTGAT CGTGCGC GAACCGCGCGCCTGCCAGGAGCTGTTCGAGGACGCCTCCTTCATGGGTACGTTCCTGC AGCACACGAACCATCT GCCCGC GAACCAGCTCATGTCGGCCCGGTGCTTCACGAACATGCTGGCCCACCAGCCCGGCCGCAACGTGGTGGTGGAGCACATTCGCGCCATCGTCGATCGGTTCGCGGTGCTGCGCGGCAGCGCCTGCAGCCCGAACCTGCAGATCGCGCTGGCCAGCTTCTATCTCAACCTGACGATGACGCAGCTGGACAAACTGTCCTCGGTCGATTTT                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BX610909             [                                                                                                                                                                                                   CACGACCTGGCCGACGGAGAAGCTGTTCCCGATCATGGACATTACGCGGCTGAT CGTGCGC GAACCGCGCGCCTGCCAGGAGCTGTTCGAGGACGCCTCCTTCATGGGTACGTTCCTGC AGCACACGAACCATCT GCCCGC GAACCAGCTCATGTCGGCCCGGTGCTTCACGAACATGCTGGCCCACCAGCCCGGCCGCAACGTTGTGGTGGAGCACATTCGCGCCATCGTCGATCGGTTCGCGGTGCTGCGCGGCAGCGCCTGCAGCCCGAACCTGCAGATCGCGCTGGCCAGCTTCTATCTCAACCTGACGATGACGCAGCTGGACAAACTGTCCTCGGTCGATTTTTGTAAGGTGCTTGCCGGAACGATCGGCGAGCTGCTGTGCTGGCTGACGGACAATGAGGCGACGTACCGCGGGTATCAGGCGCTGGGCAATCTGCTGAGCATGCCGGGCCCGGGCATGGGTGCGATCGCCGACACGCTCAAGGGGAACAGTGCCCTCACGGATAAGATACTGTTCAACATTAGCAGCGAGCTGCCGAACTTCGGGAAGCTAAACGAATGTGCCAGCTACCTGTACGAGCTGTTGGTGTGAGGCGGCGAGAGCGTTCAACTCATGGACTGCTTTGAACTGCGGAAGG]




>consensus_6482#0
GGCAAGAAATCGGCACGATGAGAAATGCTGATTTGACGAGCACTTCGACAAATTGAAAGA
GCTGAACAGCAAGCTGGAAGACCAGAGCCTGCGCATGTCGGACGACACGCTGAACGATAT
TGTGCGGTACGCGGGCGAGGTAATGACGTGCGGCGAGCAAAACTCCGCCTGCCTGACCGC
GCTCAAGTTCCTCTACACGACCTGGCCGACGGAGAAGCTGTTCCCGATCATGGACATTAC
GCGGCTGATCGTGCGCGAACCGCGCGCCTGCCAGGAGCTGTTCGAGGACGCCTCCTTCAT
GGGTACGTTCCTGCAGCACACGAACCATCTGCCCGCGAACCAGCTCATGTCGGCCCGGTG
CTTCACGAACATGCTGGCCCACCAGCCCGGCCGCAACGTGGTGGTGGAGCACATTCGCGC
CATCGTCGATCGGTTCGCGGTGCTGCGCGGCAGCGCCTGCAGCCCGAACCTGCAGATCGC
GCTGGCCAGCTTCTATCTCAACCTGACGATGACGCAGCTGGACAAACTGTCCTCGGTCGA
TTTTTGTAAGGTGCTTGCCGGAACTATCGGCGAGCTGCTGTGCTGGCTGACGGACAATGA
GGCGACGTACCGCGGGTATCAGGCGCTGGGCAATCTGCTGAGCATGCCGGGCCCGGGCAT
GGGTGCGATCGCCGACACGCTCAAGGGGAACAGTGCCCTCACGGACAAGATACTGTTCAA
CATTAGCAGCGAGCTGCCGAACTTCGGGAAGCTAAACGAATGTGCCAGCTACCTGTACGA
GCTGTTGGTGTGAGGCGGCGAGAGCGTTCAACTCATGGACTGCTTTGAACTGCGGAAGG

consensusID : consensus_6482#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 706
fasta sequence

                              [AGCAGATCGCCCGAGGTTAACATGGACATTACGCGGCTGATCGTGCGCGAACCGCNGCGCCTGCCAAGAGCTGTTCGAGGACGCCTCCTTCATAGGGTACGTTCCTGCAGCACACGAACCATCTGNCCGCGAACCAGCTCATGTCGGCCGGTGCTTCACGAAACATGCTGGGCCACCAGACCGGGCGCAACGTTGGTGGTGGAGCACATTCGCGCCATCGTCGATCTGGTTCGCGGTGCTGACTGGCGGCAGACGCCTGTCTAGGACCGGAACTGTCTAGATCGCCGCTTGTGCCACGGACTATCTATACTCACACTTGATCGGATGACGGCAAGGCCTGGGACCAAAAACTTGGTGCTTCCGCGTCGGATANNTTTTTGCCANACGTGTTGCCTTGGGCCCGGAAACGGATTCCGGTGCGGAGCTGCTGTGCTGGCTGACGGACCAATGAGGCGACGTACCGCGGGTATCATGGCGCTAGGGGCAATCTGCTGAGGCATGCCGGGCCCGGGCACTGGGTGCGATCGCCGACACGCTCAAGGGGAACAGTGCCCTCACGGACAAGATACTGTTCAACATTAGCAGCGAGCTGCCGAACTTCGGGAAGCTAAACGAATGTGCCAGCTACCTGTACGAGCTGTTGGTGTGAGGTGGCGAGAGCGTTTAACTCGTGGCCTGCTTTGAACTGCGGAAGGCGTACTTCTTC]

[+] EMBL AL696955             [AGCAGATCGCCCGAGGTTAACATGGACATTACGCGGCTGATCGTGCGCGAACCGCNGCGCCTGCCAAGAGCTGTTCGAGGACGCCTCCTTCATAGGGTACGTTCCTGCAGCACACGAACCATCTGNCCGCGAACCAGCTCATGTCGGCCGGTGCTTCACGAAACATGCTGGGCCACCAGACCGGGCGCAACGTTGGTGGTGGAGCACATTCGCGCCATCGTCGATCTGGTTCGCGGTGCTGACTGGCGGCAGACGCCTGTCTAGGACCGGAACTGTCTAGATCGCCGCTTGTGCCACGGACTATCTATACTCACACTTGATCGGATGACGGCAAGGCCTGGGACCAAAAACTTGGTGCTTCCGCGTCGGATANNTTTTTGCCANACGTGTTGCCTTGGGCCCGGAAACGGATTCCGGTGCGGAGCTGCTGTGCTGGCTGACGGACCAATGAGGCGACGTACCGCGGGTATCATGGCGCTAGGGGCAATCTGCTGAGGCATGCCGGGCCCGGGCACTGGGTGCGATCGCCGACACGCTCAAGGGGAACAGTGCCCTCACGGACAAGATACTGTTCAACATTAGCAGCGAGCTGCCGAACTTCGGGAAGCTAAACGAATGTGCCAGCTACCTGTACGAGCTGTTGGTGTGAGGTGGCGAGAGCGTTTAACTCGTGGCCTGCTTTGAACTGCGGAAGGCGTACTTCTTC]




>consensus_6482#1
AGCAGATCGCCCGAGGTTAACATGGACATTACGCGGCTGATCGTGCGCGAACCGCNGCGC
CTGCCAAGAGCTGTTCGAGGACGCCTCCTTCATAGGGTACGTTCCTGCAGCACACGAACC
ATCTGNCCGCGAACCAGCTCATGTCGGCCGGTGCTTCACGAAACATGCTGGGCCACCAGA
CCGGGCGCAACGTTGGTGGTGGAGCACATTCGCGCCATCGTCGATCTGGTTCGCGGTGCT
GACTGGCGGCAGACGCCTGTCTAGGACCGGAACTGTCTAGATCGCCGCTTGTGCCACGGA
CTATCTATACTCACACTTGATCGGATGACGGCAAGGCCTGGGACCAAAAACTTGGTGCTT
CCGCGTCGGATANNTTTTTGCCANACGTGTTGCCTTGGGCCCGGAAACGGATTCCGGTGC
GGAGCTGCTGTGCTGGCTGACGGACCAATGAGGCGACGTACCGCGGGTATCATGGCGCTA
GGGGCAATCTGCTGAGGCATGCCGGGCCCGGGCACTGGGTGCGATCGCCGACACGCTCAA
GGGGAACAGTGCCCTCACGGACAAGATACTGTTCAACATTAGCAGCGAGCTGCCGAACTT
CGGGAAGCTAAACGAATGTGCCAGCTACCTGTACGAGCTGTTGGTGTGAGGTGGCGAGAG
CGTTTAACTCGTGGCCTGCTTTGAACTGCGGAAGGCGTACTTCTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6482#0      GGCAAGAAATCGGCACGATGAGAAATGCTGATTTGACGAGCACTTCGACAAATTGAAAGA 60
consensus_6482#1      ------------------------------------------------------------
                                                                                  

consensus_6482#0      GCTGAACAGCAAGCTGGAAGACCAGAGCCTGCGCATGTCGGACGACACGCTGAACGATAT 120
consensus_6482#1      ------------------------------------------------------------
                                                                                  

consensus_6482#0      TGTGCGGTACGCGGGCGAGGTAATGACGTGCGGCGAGCAAAACTCCGCCTGCCTGACCGC 180
consensus_6482#1      ------------------------------------------------------------
                                                                                  

consensus_6482#0      GCTCAAGTTCCTCTACACGACCTGGCCGACGGAGAAGCTGTTCCCGATCATGGACATTAC 240
consensus_6482#1      ---------------------------AGCAGATCGCCCGAGGTTAA-CATGGACATTAC 32
                                                   * **    * *      * ************

consensus_6482#0      GCGGCTGATCGTGCGCGAACCGCG-CGCCTGCCAGGAGCTGTTCGAGGACGCCTCCTTCA 299
consensus_6482#1      GCGGCTGATCGTGCGCGAACCGCNGCGCCTGCCAAGAGCTGTTCGAGGACGCCTCCTTCA 92
                      ***********************  ********* *************************

consensus_6482#0      T-GGGTACGTTCCTGCAGCACACGAACCATCTGCCCGCGAACCAGCTCATGTCGGCCCGG 358
consensus_6482#1      TAGGGTACGTTCCTGCAGCACACGAACCATCTGNCCGCGAACCAGCTCATGTCGGCC-GG 151
                      * ******************************* *********************** **

consensus_6482#0      TGCTTCACGAA-CATGCTGGCCCACCAGCCCGGCCGCAACGT-GGTGGTGGAGCACATTC 416
consensus_6482#1      TGCTTCACGAAACATGCTGGGCCACCAGACCGGGCGCAACGTTGGTGGTGGAGCACATTC 211
                      *********** ******** ******* **** ******** *****************

consensus_6482#0      GCGCCATCGTCGATC-GGTTCGCGGTGCTGC---GCGGCAG-CGCCTGC---AGCCCGAA 468
consensus_6482#1      GCGCCATCGTCGATCTGGTTCGCGGTGCTGACTGGCGGCAGACGCCTGTCTAGGACCGGA 271
                      *************** **************    ******* ******     * *** *

consensus_6482#0      CCTGC--AGATCGC-GCTGG-----CCAGCT-TCTAT-------CTCAACCTGACGATGA 512
consensus_6482#1      ACTGTCTAGATCGCCGCTTGTGCCACGGACTATCTATACTCACACTTGATCGGATGACGG 331
                       ***   ******* *** *     *   ** *****       **  * * ** ** * 

consensus_6482#0      CGCAGCT--GGAC---AAACT--GTCCTC--------GGTCGATTTTTGTAAGGTG---- 553
consensus_6482#1      CAAGGCCTGGGACCAAAAACTTGGTGCTTCCGCGTCGGATANNTTTTTGCCANACGTGTT 391
                      *   **   ****   *****  ** **         * *   ******  *   *    

consensus_6482#0      --CTTG---CCGGAA-------CTATCGGCGAGCTGCTGTGCTGGCTGACGGAC-AATGA 600
consensus_6482#1      GCCTTGGGCCCGGAAACGGATTCCGGTGCGGAGCTGCTGTGCTGGCTGACGGACCAATGA 451
                        ****   ******       *    *  ************************ *****

consensus_6482#0      GGCGACGTACCGCGGGTATCA-GGCGCT--GGGCAATCTGCTGAG-CATGCCGGGCCCGG 656
consensus_6482#1      GGCGACGTACCGCGGGTATCATGGCGCTAGGGGCAATCTGCTGAGGCATGCCGGGCCCGG 511
                      ********************* ******  *************** **************

consensus_6482#0      GCA-TGGGTGCGATCGCCGACACGCTCAAGGGGAACAGTGCCCTCACGGACAAGATACTG 715
consensus_6482#1      GCACTGGGTGCGATCGCCGACACGCTCAAGGGGAACAGTGCCCTCACGGACAAGATACTG 571
                      *** ********************************************************

consensus_6482#0      TTCAACATTAGCAGCGAGCTGCCGAACTTCGGGAAGCTAAACGAATGTGCCAGCTACCTG 775
consensus_6482#1      TTCAACATTAGCAGCGAGCTGCCGAACTTCGGGAAGCTAAACGAATGTGCCAGCTACCTG 631
                      ************************************************************

consensus_6482#0      TACGAGCTGTTGGTGTGAGGCGGCGAGAGCGTTCAACTCATGGACTGCTTTGAACTGCGG 835
consensus_6482#1      TACGAGCTGTTGGTGTGAGGTGGCGAGAGCGTTTAACTCGTGGCCTGCTTTGAACTGCGG 691
                      ******************** ************ ***** *** ****************

consensus_6482#0      AAGG----------- 839
consensus_6482#1      AAGGCGTACTTCTTC 706
                      ****