These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6483#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 895 fasta sequence [CCGGCTGTCTGTGCATCCTGTTTTCTTTGCTTTTTAAAATAATGTTTATCGACTTCCAGCGTGAGGAATGTGTTTGTGTTGGTTCGTAATGTCCTTTCCTTCTTGACAAGCGCGGTTTTTTCGCGTATTATTCGTTTCTCCGCATTAATAGCGTATTTCGAGGACAAGCTGTATTGTATCGAGAATGTTTCAAAATAACCAACGAGTTCTCGGTACTTTCTCGGTTGCTATGGAAAATGTGTAAATTTCGCTGCAGTTCTCCTATAGCAAATCGATGCTCGGAAAGGGGAACTTTTTCCTGATATCCCTTCGGCAAAATGTCACACGAATGTCTATGACCATGTCCGCTGGCCAACCCGGTTCTGGTGCGGTGGATCATCCGTCAACGAACGTCGCTCTGGATTGGATAATCAATGTTTTGATTTCATTTCTGCCGTCGCAGCTGGTTCGTCGCACGACTCGCATTAATCGTGAAAATAAAGCCCTGCCCCGAGATGATCCGACAAATTTGGCTGAAAAACGACATTCTCGTTAAGCTGGTGGCCGCCCGCGCTTACAGTGCCCCATCGTCGTCCTCCGCCGGTCCCAAGGGGCCAGCCGCTCCGGCAGCAGCGCCAGCCGATGTTCCTGGGCTAAGCTCGCGGTGCGTTGCGAAGAAGGATGGCCCGGTTGGCCCGGGAGCGGAACGGACCGGAACGTACAAGGTGCCGGAATACTTTAGCTACAACCAGACGAGCTACTTTGAGGCTGAGATTGAAATGTCCAAGTTCCGCATCCCGCAGCCCTCGGCCAAGAACTGAACACCGGGTGGCTTCTGTGAATTGTAAATAAGCGGCAGCGGAAGTCCGTTAAATAAAGTCATTAGTTGGAGGATGTGATCCCGTACCGGAGAACA] [+] EMBL BM602518 [CCGGCTGTCTGTGCATCCTGTTTTCTTTGCTTTTTAAAATAATGTTTATCGACTTCCAGCGTGAGGAATGTGTTTGTGTTGGTTCGTAATGTCCTTTCCTTCTTGACAAGCGCGGTTTTTTCGCGTATTATTCGTTTCTCCGCATTAATAGCGTATTTCGAGGACAAGCTGTATTGTATCGAGAATGTTTCAAAATAACCAACGAGTTCTCGGTACTTTCTCGGTTGCTATGGAAAATGTGTAAATTTCGCTGCAGTTCTCCTATAGCAAATCGATGCTCGGAAAGGGGAACTTTTTCCTGATATCCCTTCGGCAAAATGTCACACGAATGTCTATGACCATGTCCGCTGGCCAACCCGGTTCTGGTGCGGTGGATCATCCGTCAACGAACGTCGCTCTGGATTGGATAATCAATGTTTTGATTTCATTTCTGCCGTCGCAGCTGGTTCGTCGCACGACTCGCATTAATCGTGAAAATAAAACCCTACCCCGAGATGATCCGACAAATTTTGCTAAAAAACGACATTCTCGTTAAGCTGGTGGCCGCCCGCGCTTACAGTGCCCCATCGTCGTCCTCCGCCGGTCCCAAGGGGCCAGCCGCTCCGGCAGCAGC ] [+] EMBL BM655712 [ ccGATCATCCGTCAACGAACGTCGCTCTGGATTGGATAATCAATGTTTTGATTTCATTTCTGCCGTCGCAGCTGGTTCGTCGCACGACTCGCATTAATCGTGAAAATAAAGCCCTGCCCCGAGATGATCCGACAAATTTGGCTGAAAAACGACATTCTCGTTAAGCTGGTGGCCGCCCGCGCTTACAGTGCCCCATCGTCGTCCTCCGCCGGTCCCAAGGGGCCAGCCGCTCCGGCAGCAGCGCCAGCCGATGTTCCTGGGCTAAGCTCGCGGTGCGTTGCGAAGAAGGATGGCCCGGTTGGCCCGGGAGCGGAACGGACCGGAACGTACAAGGTGCCGGAATACTTTAGCTACAACCAGACGAGCTACTTTGAGGCTGAGATTGAAATGTCCAAGTTCCGCATCCCGCAGCCCTCGGCCAAGAACTGAACACCGGGTGGCTTCTGTGAATTGTAAATAAGCGGCAGCGGAAGTCCGTTAAATAAAG ] [+] EMBL BM634267 [ ccgCGTCGCACGACTCGCATTAATCGTGAAAATAAAGCCCTGCCCCGAGATGATCCGACAAATTTGGCTGAAAAACGACATTCTCGTTAAGCTGGTGGCCGCCCGCGCTTACAGTGCCCCATCGTCGTCCTCCGCCGGTCCCAAGGGGCCAGCCGCTCCGGCAGCAGCGCCAGCCGATGTTCCTGGGCTAAGCTCGCGGTGCGTTGCGAAGAAGGATGGCCCGGTTGGCCCGGGAGCGGAACGGACCGGAACGTACAAGGTGCCGGAATACTTTAGCTACAACCAGACGAGCTACTTTGAGGCTGAGATTGAAATGTCCAAGTTCCGCATCCCGCAGCCCTCGGCCAAGAACTGAACACCGGGTGGCTTCTGTGAATTGTAAATAAGCGGCAGCGGAAGTCCGTTAAATAAAGTCATTAGTTGGAGGATGTGATCCCGTACCGGAGAACA] consensusID : consensus_6483#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 491 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGCCGTCGCAGCTGGTTCGTCGCACGACTCGCATTAATCGTGAAAATAAAGCCCTGCCCCGAGATGATCCGACAAATTTTGCTGAAAAACGACATTCTCGTTAAGCTGGTAGCCGCCCGCGCTTACAGTGCCCCATCGTCGTCCTCCGCCGGTCCCAAGGGGCCAGCCGCTCCGGCAGCAGCGCCAGCCGATGTTCCTGGGCTAAGCTCGCGGTGTGTTGCGAAGAAGGATGGCCCAGTTGGCCCGGGAGCGGAACGGACCGGAACGTACAAGGTGCCGGAATACTTTAGCTACAACCAGACGAGCTACTTTGAGGCTGAGATTGAAATGTCCAAGTTCCGCATCCCGCAGCCCTCGGCCAAGAACTGAACACCGGGTGGCTTCTGTGAACTGTAAATAAGCGGCAGCGGAAGTCCGTTAAATAAAGTCATTAGTTGGAGGATGTGATCCCGTACCGGCGAGACT] [+] EMBL BM608038 [CCGCCCACGCGTCCGCCCACGCGTCCGGCCGTCGCAGCTGGTTCGTCGCACGACTCGCATTAATCGTGAAAATAAAGCCCTGCCCCGAGATGATCCGACAAATTTTGCTGAAAAACGACATTCTCGTTAAGCTGGTAGCCGCCCGCGCTTACAGTGCCCCATCGTCGTCCTCCGCCGGTCCCAAGGGGCCAGCCGCTCCGGCAGCAGCGCCAGCCGATGTTCCTGGGCTAAGCTCGCGGTGTGTTGCGAAGAAGGATGGCCCAGTTGGCCCGGGAGCGGAACGGACCGGAACGTACAAGGTGCCGGAATACTTTAGCTACAACCAGACGAGCTACTTTGAGGCTGAGATTGAAATGTCCAAGTTCCGCATCCCGCAGCCCTCGGCCAAGAACTGAACACCGGGTGGCTTCTGTGAACTGTAAATAAGCGGCAGCGGAAGTCCGTTAAATAAAGTCATTAGTTGGAGGATGTGATCCCGTACCGGCGAGACT] consensusID : consensus_6483#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 460 fasta sequence [CCGCGGACGCGTGGGTTTTGATTTCATTTCTGCCGTCGCAGCTGGTTCGTCGCACGACTCGCATTAATCGTGAAAATAAAGCCCTGCCCCGAGATGATCCGACAAATTTGGCTGAAAAACGACATTCTCGTTAAGCTGGTGGCCGCCCGCGCTTACAGTGCCCCATCGTCGTCCTCCGCCGGTCCCAAGGGGCCAGCCGCTCCGGCAGCAGCGCCAGCCGATGTTCCTGGGCTAAGCTCGCGGTGCGTTGCGAAGAAGGATGGCCCGGTTGGCCCGGGAGCGGAACGGACCGGAACGTACAAGGTGCCGGAATACTTTAGCTACAACCAGACGAGCTACTTTGAGGCTGAGATTGAAATGTCCAAGTTCCGCATCCCGCAGCCCTCGGCCAAGAACTGAACACCGGGTGGCTTCTGTGAATTGTAAATAAGCGGCAGCGGAAGTCCGTTAAATAAAGTCA] [+] EMBL BM632146 [CCGCGGACGCGTGGGTTTTGATTTCATTTCTGCCGTCGCAGCTGGTTCGTCGCACGACTCGCATTAATCGTGAAAATAAAGCCCTGCCCCGAGATGATCCGACAAATTTGGCTGAAAAACGACATTCTCGTTAAGCTGGTGGCCGCCCGCGCTTACAGTGCCCCATCGTCGTCCTCCGCCGGTCCCAAGGGGCCAGCCGCTCCGGCAGCAGCGCCAGCCGATGTTCCTGGGCTAAGCTCGCGGTGCGTTGCGAAGAAGGATGGCCCGGTTGGCCCGGGAGCGGAACGGACCGGAACGTACAAGGTGCCGGAATACTTTAGCTACAACCAGACGAGCTACTTTGAGGCTGAGATTGAAATGTCCAAGTTCCGCATCCCGCAGCCCTCGGCCAAGAACTGAACACCGGGTGGCTTCTGTGAATTGTAAATAAGCGGCAGCGGAAGTCCGTTAAATAAAGTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6483#0 CCGGCTGTCTGTGCATCCTGTTTTCTTTGCTTTTTAAAATAATGTTTATCGACTTCCAGC 60 consensus_6483#2 ------------------------------------------------------------ consensus_6483#1 ------------------------------------------------------------ consensus_6483#0 GTGAGGAATGTGTTTGTGTTGGTTCGTAATGTCCTTTCCTTCTTGACAAGCGCGGTTTTT 120 consensus_6483#2 ------------------------------------------------------------ consensus_6483#1 ------------------------------------------------------------ consensus_6483#0 TCGCGTATTATTCGTTTCTCCGCATTAATAGCGTATTTCGAGGACAAGCTGTATTGTATC 180 consensus_6483#2 ------------------------------------------------------------ consensus_6483#1 ------------------------------------------------------------ consensus_6483#0 GAGAATGTTTCAAAATAACCAACGAGTTCTCGGTACTTTCTCGGTTGCTATGGAAAATGT 240 consensus_6483#2 ------------------------------------------------------------ consensus_6483#1 ------------------------------------------------------------ consensus_6483#0 GTAAATTTCGCTGCAGTTCTCCTATAGCAAATCGATGCTCGGAAAGGGGAACTTTTTCCT 300 consensus_6483#2 ------------------------------------------------------------ consensus_6483#1 ------------------------------------------------------------ consensus_6483#0 GATATCCCTTCGGCAAAATGTCACACGAATGTCTATGACCATGTCCGCTGGCCAACCCGG 360 consensus_6483#2 ------------------------------------------------------------ consensus_6483#1 ------------------------------------------------------------ consensus_6483#0 TTCTGGTGCGGTGGATCATCCGTCAACGAACGTCGCTCTGGATTGGATAATCAATGTTTT 420 consensus_6483#2 ----------------------------------------CCGCGGACGCGTGG-GTTTT 19 consensus_6483#1 ----------------------------------------------CCGCCCACGCGTCC 14 * consensus_6483#0 GATTTCATTTCTG-CCGTCGCAGCTGGTTCGTCGCACGACTCGCATTAATCGTGAAAATA 479 consensus_6483#2 GATTTCATTTCTG-CCGTCGCAGCTGGTTCGTCGCACGACTCGCATTAATCGTGAAAATA 78 consensus_6483#1 GCCCACGCGTCCGGCCGTCGCAGCTGGTTCGTCGCACGACTCGCATTAATCGTGAAAATA 74 * * ** * ********************************************** consensus_6483#0 AAGCCCTGCCCCGAGATGATCCGACAAATTTGGCTGAAAAACGACATTCTCGTTAAGCTG 539 consensus_6483#2 AAGCCCTGCCCCGAGATGATCCGACAAATTTGGCTGAAAAACGACATTCTCGTTAAGCTG 138 consensus_6483#1 AAGCCCTGCCCCGAGATGATCCGACAAATTTTGCTGAAAAACGACATTCTCGTTAAGCTG 134 ******************************* **************************** consensus_6483#0 GTGGCCGCCCGCGCTTACAGTGCCCCATCGTCGTCCTCCGCCGGTCCCAAGGGGCCAGCC 599 consensus_6483#2 GTGGCCGCCCGCGCTTACAGTGCCCCATCGTCGTCCTCCGCCGGTCCCAAGGGGCCAGCC 198 consensus_6483#1 GTAGCCGCCCGCGCTTACAGTGCCCCATCGTCGTCCTCCGCCGGTCCCAAGGGGCCAGCC 194 ** ********************************************************* consensus_6483#0 GCTCCGGCAGCAGCGCCAGCCGATGTTCCTGGGCTAAGCTCGCGGTGCGTTGCGAAGAAG 659 consensus_6483#2 GCTCCGGCAGCAGCGCCAGCCGATGTTCCTGGGCTAAGCTCGCGGTGCGTTGCGAAGAAG 258 consensus_6483#1 GCTCCGGCAGCAGCGCCAGCCGATGTTCCTGGGCTAAGCTCGCGGTGTGTTGCGAAGAAG 254 *********************************************** ************ consensus_6483#0 GATGGCCCGGTTGGCCCGGGAGCGGAACGGACCGGAACGTACAAGGTGCCGGAATACTTT 719 consensus_6483#2 GATGGCCCGGTTGGCCCGGGAGCGGAACGGACCGGAACGTACAAGGTGCCGGAATACTTT 318 consensus_6483#1 GATGGCCCAGTTGGCCCGGGAGCGGAACGGACCGGAACGTACAAGGTGCCGGAATACTTT 314 ******** *************************************************** consensus_6483#0 AGCTACAACCAGACGAGCTACTTTGAGGCTGAGATTGAAATGTCCAAGTTCCGCATCCCG 779 consensus_6483#2 AGCTACAACCAGACGAGCTACTTTGAGGCTGAGATTGAAATGTCCAAGTTCCGCATCCCG 378 consensus_6483#1 AGCTACAACCAGACGAGCTACTTTGAGGCTGAGATTGAAATGTCCAAGTTCCGCATCCCG 374 ************************************************************ consensus_6483#0 CAGCCCTCGGCCAAGAACTGAACACCGGGTGGCTTCTGTGAATTGTAAATAAGCGGCAGC 839 consensus_6483#2 CAGCCCTCGGCCAAGAACTGAACACCGGGTGGCTTCTGTGAATTGTAAATAAGCGGCAGC 438 consensus_6483#1 CAGCCCTCGGCCAAGAACTGAACACCGGGTGGCTTCTGTGAACTGTAAATAAGCGGCAGC 434 ****************************************** ***************** consensus_6483#0 GGAAGTCCGTTAAATAAAGTCATTAGTTGGAGGATGTGATCCCGTACCGGAGAACA- 895 consensus_6483#2 GGAAGTCCGTTAAATAAAGTCA----------------------------------- 460 consensus_6483#1 GGAAGTCCGTTAAATAAAGTCATTAGTTGGAGGATGTGATCCCGTACCGGCGAGACT 491 ********************** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||