These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6486#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1331 fasta sequence [CCGCACGGTCCCAAAATCGAAGTCGAATTCCTTCGGTGCGATAAAAAAAAAGAAGCCCCCTTGTTGTATATCGAGAGCCGTCACTACGCACACACAGCAGAAGTTGGAACGGGCAAAGGCGAAAACCTACCAAATAGTGCTGTGGTGCTGAACCGTTCGGCAGACGAAAAGTGCGTGCGTGCGTGCGTGCTTGCGTTACTGAGTGTGTCCGGCGGAGGAGGTACTCCGCACAGGTGGTGAAAAAGAAACAAAGCCGTGAAAGTTTGCGAAGGGTGCTTGGATTTGTCGACCGAAGACGGCGGCGACCCGTTCAACGACAGGAAGAGGAATTGTGTGTGCGTGTGTGCGTGTGTGTGCACTTGTAAGAAAGGCACAGACGGTACAGAACAAAGTGTGTTGTGCGGGGTGTGAAAGCGTTTGCGCTGTTCTACAGCGTTTTGTGCGTGCAAACTAAACAGTTGACCAGCGGCAGCCCATCAACAGCACCAGCATGGAGTCACTGATTCCGATCGTGAACAAGCTGCAGGATGCGTTCACGCAGATGGGGGTGCATATGCAGCTTGACCTGCCACAGATCGCGGTGGTCGGCGGCCAGTCGGCAGGAAAATCGTCCGTGCTGGAAAATTTCGTCGGAAGAGATTTCCTCCCCCGAGGATCCGGCATCGTAACGCGACGACCATTGATTTTACAGCTAATCAATGGAACTGTGGAATTTGGAGAGTTCCTTCATCAGAAGGGTAAGAAGTTCTCCAACTTTGAGGAGATTCGGCAGGAGATCGAAGCGGAAACCGATCGCATCACCGGTAGCAACAAGGGTATCTCAAACATACCGATTAATCTTCGCGTGTACTCGCCGCATGTACTCAACTTGACGCTTATCGATTTGCCCGGTTTGACGAAAGTACCGATCGGCGATCAGCCAGCCGACATTGAGAACCAGATCAAGGGCATGATCTTTCAGTTCATCCGCAAGGAAACGTGTCTGATTTTGGCCGTCACGCCCGCCAACACCGATTTGGCCAACAGTGATGCGCTCAAGCTGGCCAAAGAGGTCGACCCGCAGGGCGTCCGGACGATCGGTGTCATCACCAAGCTCGATCTGATGGACGAGGGAACGGATGCGCGCGATATTCTCGAGAACAAGCTGCTGCCGTTGCGCCGTGGCTACATCGGCGTGGTGAACCGGTCGCAGAAGGATATCGAGGGCAGAAAGGACATCCATGCGGCCCTGGCCGCGGAGCGCAAGTTCTTCCTGAGCCATCCGAGCTATCGGCACATTGCCGATCGGCTCGGCACGCCGTATCTGCAGAAGGTGCTCAATCAGCAGCTGA] [+] EMBL BM648618 [CCGCACGGTCCCAAAATCGAAGTCGAATTCCTTCGGTGCGATAAAAAAAAAGAAGCCCCCTTGTTGTATATCGAGAGCCGTCACTACGCACACACAGCAGAAGTTGGAACGGGCAAAGGCGAAAACCTACCAAATAGTGCTGTGGTGCTGAACCGTTCGGCAGACGAAAAGTGCGTGCGTGCGTGCGTGCTTGCGTTACTGAGTGTGTCCGGCGGAGGAGGTACTCCGCACAGGTGGTGAAAAAGAAACAAAGCCGTGAAAGTTTGCGAAGGGTGCTTGGATTTGTCGACCGAAGACGGCGGCGACCCGTTCAACGACAGGAAGAGGAATTGTGTGTGCGTGTGTGCGTGTGTGTGCACTTGTAAGAAAGGCACAGACGGTACAGAACAAAGTGTGTTGTGCGGGGTGTGAAAGCGTTTGCGCTGTTCTACAGCGTTTTGTGCGTGCAAACTAAACAGTTGACCAGCGGCAGCCCATCAACAGCACCAGCATGGAGTCACTGATTCCGATCGTGAACAAGCTGCAGGATGCGTTCACGCAGATGGGGGTGCATATGCAGCTTGACCTGCCACAGATCGCGGTGGTCGGCGGCCAGTCGGCAGGAAAATCGTCCGTGCTGGAAAATTTCGTCGGAAGAGATTTCCTCCCCCGAGGATCCGGCATCGTAACGCGACGAC ] [+] EMBL BM593760 [ ccGCTTGGATTTGTCGACCGAAGACGGCGGGGACCCGTTCAACGACAGGAAGAGGAATTGTGTGTGCGTGTGTGCGTGTGTGTGCACTTGTAAGAAAGGCACAGACGGTACAGAACAAAGTGTGTTGTGCGGGGTGTGAAAGCGTTTGCGCTGTTCTACAGCGTTTTGTGCGTGCAAACTAAACAGTTGACCAGGGGCAGCCCATCAACAGCACCAGCATGGAGTCACTGATTCCGATCGTGAACAAGCTGCAGGATGCGTTCACGCAGATGGGGGTGCATATGCAGCTTGACCTGCCACAGATCGCGGTGGTCGGCGGCCAGTCGGCAGGAAAATCGTCCGTGCTGGAAAATTTCGTCGGAAGAGATTTCCTCCCCCGAGGATCCGGCATCGTAACGCGACGACCATTGATTTTACAGCTAATCAATGGAACTGTGGAATTTGGAGAGTTCCTTCATCAGAAGGGTAAGAAGTTCTCCAACTTTGAGGAGATTCGGCAGGAGATCGAAGCGGAAACCGATCGCATCACCGGTAGCAACAAGGGTATCTCAAACATACCGATTAATCTTCGCGTGTACTCGCCGCATGTACTCAACTTGACGCTTATCGATTTGCCCGGTTTGACGAAAGTACCGATCGGCGATCAGCCAGCCGACATTGAGAACCAGATCA ] [+] EMBL BM636163 [ ccgGTCGGAAGAGATTTCCTCCCCCGAGGATCCGGCATCGTAACGCGACGACCATTGATTTTACAGCTAATCAATGGAACTGTGGAATTTGGAGAGTTCCTTCATCAGAAGGGTAAGAAGTTCTCCAACTTTGAGGAGATTCGGCAGGAGATCGAAGCGGAAACCGATCGCATCACCGGTAGCAACAAGGGTATCTCAAACATACCGATTAATCTTCGCGTGTACTCGCCGCATGTACTCAACTTGACGCTTATCGATTTGCCCGGTTTGACGAAGGTACCGATCGGCGATCAGCCAGCCGACATTGAGAACCAGATCAAGGGCATGATCTTTCAGTTCATCCGCAAGGAAACGTGTCTGATTTTGGCCGTCACGCCCGCCAACACCGATTTGGCCAACAGTGATGCGCTCAAGCTGGCCAAAGAGGTCGACCCGCAGGGCGTCCGGACGATCGGTGTCATCACCAAGCTCGATCTGATGGACGAGGGAACGGATGCGCGCGATATTCTCGAGAACAAGCTGCTGCCGTTGCGCCGTGGCTACATCGGCGTGGTGAACCGGTCGCAGAAGGATATCGAGGGCAGAAAGGACATCCATGCGGCCCTGGCCGCGGAGCGCAAGTTCTTCCTGAGCCATCCGAGCTATCGGCACATTGCCGATCGGCTCGGCACGCCGTATCTGCAGAAGGTGCTCAATCAGCAGCTGA] consensusID : consensus_6486#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 617 fasta sequence [GAGTTCCTTCATCAGAAGGGTAAGAAGTTCTCCAACTTTGAGGAGATTCGGCAGGAGATCGAAGCGGGAACCGATCGCATCACCGGTAGCAACAAGGGTATCTCAAACATACCGATTAATCTTCGCGTGTACTCGCCGCATGTACTCAACTTGACGCTTATCGATTTGCCCGGTTTGACGAAGGTACCGATCGGCGATCAGCCAGCCGATATTGAGAACCAGATCAAGGGCATGATCTTTCAGTTCATCCGCAGGCGTCCGGACGATCGGTGTCATCACCAAGCTCGATCTGATGGACGAGGGAACGGATGCGCGCGATATTCTCGAGAACAAGCTGCTGCCGTTGCGCCGTGGCTACATCGGCGTGGTGAACCGGTCCCAGAAGGATATCGAGGGCAGAAAGGACATCCATGCGGCCCTGGCCGCGGAGGCAATGTTCTTCCTGAGCCATCCGAGCTATCGGCACATTGCCGATCGGCTCGGCACGCCGTATCTGCAGAAGGTGCTCAATCAGCAGCTGACCAACCATATCCGTGATACGCTGCCGGCGCTGCGCGATCGGCTACAGAAGCAGATGCTAACGCTGGAGAAGCATGTGCATCAGTACAAACATTTCC] [+] EMBL CNS09IYG [GAGTTCCTTCATCAGAAGGGTAAGAAGTTCTCCAACTTTGAGGAGATTCGGCAGGAGATCGAAGCGGGAACCGATCGCATCACCGGTAGCAACAAGGGTATCTCAAACATACCGATTAATCTTCGCGTGTACTCGCCGCATGTACTCAACTTGACGCTTATCGATTTGCCCGGTTTGACGAAGGTACCGATCGGCGATCAGCCAGCCGATATTGAGAACCAGATCAAGGGCATGATCTTTCAGTTCATCCGCAGGCGTCCGGACGATCGGTGTCATCACCAAGCTCGATCTGATGGACGAGGGAACGGATGCGCGCGATATTCTCGAGAACAAGCTGCTGCCGTTGCGCCGTGGCTACATCGGCGTGGTGAACCGGTCCCAGAAGGATATCGAGGGCAGAAAGGACATCCATGCGGCCCTGGCCGCGGAGGCAATGTTCTTCCTGAGCCATCCGAGCTATCGGCACATTGCCGATCGGCTCGGCACGCCGTATCTGCAGAAGGTGCTCAATCAGCAGCTGACCAACCATATCCGTGATACGCTGCCGGCGCTGCGCGATCGGCTACAGAAGCAGATGCTAACGCTGGAGAAGCATGTGCATCAGTACAAACATTTCC] consensusID : consensus_6486#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 571 fasta sequence [CCGCCCACGCGTCCGCATCACCAAGCTCGATCTGATGGACGAGGGAACGGATGCGCGCGATATTCTCGAGAACAAGCTGCTGCCGTTGCGCCGCGGCTACATCGGCGTGGTGAACCGGTCGCAGAAGGATATCGAGGGCAGAAAGGACATCCATGCGGCCCTGGCCGCGGAGCGCAAGTTCTTCCTGAGCCATCCGAGCTATCGGCACATTGCCGATCGGCTCGGCACGCCGTATCTGCAGAAGGTGCTCAATCAGCAGCTGACCAACCATATCCGTGATACGCTGCCGGCGCTGCGCGATCGGCTACAGAAGCAGATGCTAACGCTGGAGAAGGATGTGGATCAGTACAAACATTTCCGCCCGGACGATCCAAGCATCAAGACGAAGGCTATGCTGCAAATGATCCAGCAACTGCAGTCGGATTTCGAGCGCACAATTGAAGGTTCCGGTTCGGCGCTAGTCAACACGAACGAACTTTCTGGCGGTGCCAAGATCAATAGAATATTCCACGAGCGATTGCGTTTCGAGATCGTCAAGATGTCGTGCGACGAGAAGGAGCTGCGGCGTGAA] [+] EMBL BM612430 [CCGCCCACGCGTCCGCATCACCAAGCTCGATCTGATGGACGAGGGAACGGATGCGCGCGATATTCTCGAGAACAAGCTGCTGCCGTTGCGCCGCGGCTACATCGGCGTGGTGAACCGGTCGCAGAAGGATATCGAGGGCAGAAAGGACATCCATGCGGCCCTGGCCGCGGAGCGCAAGTTCTTCCTGAGCCATCCGAGCTATCGGCACATTGCCGATCGGCTCGGCACGCCGTATCTGCAGAAGGTGCTCAATCAGCAGCTGACCAACCATATCCGTGATACGCTGCCGGCGCTGCGCGATCGGCTACAGAAGCAGATGCTAACGCTGGAGAAGGATGTGGATCAGTACAAACATTTCCGCCCGGACGATCCAAGCATCAAGACGAAGGCTATGCTGCAAATGATCCAGCAACTGCAGTCGGATTTCGAGCGCACAATTGAAGGTTCCGGTTCGGCGCTAGTCAACACGAACGAACTTTCTGGCGGTGCCAAGATCAATAGAATATTCCACGAGCGATTGCGTTTCGAGATCGTCAAGATGTCGTGCGACGAGAAGGAGCTGCGGCGTGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6486#0 CCGCACGGTCCCAAAATCGAAGTCGAATTCCTTCGGTGCGATAAAAAAAAAGAAGCCCCC 60 consensus_6486#1 ------------------------------------------------------------ consensus_6486#2 ------------------------------------------------------------ consensus_6486#0 TTGTTGTATATCGAGAGCCGTCACTACGCACACACAGCAGAAGTTGGAACGGGCAAAGGC 120 consensus_6486#1 ------------------------------------------------------------ consensus_6486#2 ------------------------------------------------------------ consensus_6486#0 GAAAACCTACCAAATAGTGCTGTGGTGCTGAACCGTTCGGCAGACGAAAAGTGCGTGCGT 180 consensus_6486#1 ------------------------------------------------------------ consensus_6486#2 ------------------------------------------------------------ consensus_6486#0 GCGTGCGTGCTTGCGTTACTGAGTGTGTCCGGCGGAGGAGGTACTCCGCACAGGTGGTGA 240 consensus_6486#1 ------------------------------------------------------------ consensus_6486#2 ------------------------------------------------------------ consensus_6486#0 AAAAGAAACAAAGCCGTGAAAGTTTGCGAAGGGTGCTTGGATTTGTCGACCGAAGACGGC 300 consensus_6486#1 ------------------------------------------------------------ consensus_6486#2 ------------------------------------------------------------ consensus_6486#0 GGCGACCCGTTCAACGACAGGAAGAGGAATTGTGTGTGCGTGTGTGCGTGTGTGTGCACT 360 consensus_6486#1 ------------------------------------------------------------ consensus_6486#2 ------------------------------------------------------------ consensus_6486#0 TGTAAGAAAGGCACAGACGGTACAGAACAAAGTGTGTTGTGCGGGGTGTGAAAGCGTTTG 420 consensus_6486#1 ------------------------------------------------------------ consensus_6486#2 ------------------------------------------------------------ consensus_6486#0 CGCTGTTCTACAGCGTTTTGTGCGTGCAAACTAAACAGTTGACCAGCGGCAGCCCATCAA 480 consensus_6486#1 ------------------------------------------------------------ consensus_6486#2 ------------------------------------------------------------ consensus_6486#0 CAGCACCAGCATGGAGTCACTGATTCCGATCGTGAACAAGCTGCAGGATGCGTTCACGCA 540 consensus_6486#1 ------------------------------------------------------------ consensus_6486#2 ------------------------------------------------------------ consensus_6486#0 GATGGGGGTGCATATGCAGCTTGACCTGCCACAGATCGCGGTGGTCGGCGGCCAGTCGGC 600 consensus_6486#1 ------------------------------------------------------------ consensus_6486#2 ------------------------------------------------------------ consensus_6486#0 AGGAAAATCGTCCGTGCTGGAAAATTTCGTCGGAAGAGATTTCCTCCCCCGAGGATCCGG 660 consensus_6486#1 ------------------------------------------------------------ consensus_6486#2 ------------------------------------------------------------ consensus_6486#0 CATCGTAACGCGACGACCATTGATTTTACAGCTAATCAATGGAACTGTGGAATTTGGAGA 720 consensus_6486#1 ----------------------------------------------------------GA 2 consensus_6486#2 ------------------------------------------------------------ consensus_6486#0 GTTCCTTCATCAGAAGGGTAAGAAGTTCTCCAACTTTGAGGAGATTCGGCAGGAGATCGA 780 consensus_6486#1 GTTCCTTCATCAGAAGGGTAAGAAGTTCTCCAACTTTGAGGAGATTCGGCAGGAGATCGA 62 consensus_6486#2 ------------------------------------------------------------ consensus_6486#0 AGCGGAAACCGATCGCATCACCGGTAGCAACAAGGGTATCTCAAACATACCGATTAATCT 840 consensus_6486#1 AGCGGGAACCGATCGCATCACCGGTAGCAACAAGGGTATCTCAAACATACCGATTAATCT 122 consensus_6486#2 ------------------------------------------------------------ consensus_6486#0 TCGCGTGTACTCGCCGCATGTACTCAACTTGACGCTTATCGATTTGCCCGGTTTGACGAA 900 consensus_6486#1 TCGCGTGTACTCGCCGCATGTACTCAACTTGACGCTTATCGATTTGCCCGGTTTGACGAA 182 consensus_6486#2 ------------------------------------------------------------ consensus_6486#0 AGTACCGATCGGCGATCAGCCAGCCGACATTGAGAACCAGATCAAGGGCATGATCTTTCA 960 consensus_6486#1 GGTACCGATCGGCGATCAGCCAGCCGATATTGAGAACCAGATCAAGGGCATGATCTTTCA 242 consensus_6486#2 ------------------------------------------------------------ consensus_6486#0 GTTCATCCGCAAGGAAACGTGTCTGATTTTGGCCGTCACGCCCGCCAACACCGATTTGGC 1020 consensus_6486#1 GTTCATCCGCA------------------------------------------------- 253 consensus_6486#2 ------------------------------------------------------------ consensus_6486#0 CAACAGTGATGCGCTCAAGCTGGCCAAAGAGGTCGACCCGCAGGGCGTCCGGACGATCGG 1080 consensus_6486#1 -------------------------------------------GGCGTCCGGACGATCGG 270 consensus_6486#2 --------------------------------------------CCGCCCACGCGTCCG- 15 ** ** ** ** consensus_6486#0 TGTCATCACCAAGCTCGATCTGATGGACGAGGGAACGGATGCGCGCGATATTCTCGAGAA 1140 consensus_6486#1 TGTCATCACCAAGCTCGATCTGATGGACGAGGGAACGGATGCGCGCGATATTCTCGAGAA 330 consensus_6486#2 ---CATCACCAAGCTCGATCTGATGGACGAGGGAACGGATGCGCGCGATATTCTCGAGAA 72 ********************************************************* consensus_6486#0 CAAGCTGCTGCCGTTGCGCCGTGGCTACATCGGCGTGGTGAACCGGTCGCAGAAGGATAT 1200 consensus_6486#1 CAAGCTGCTGCCGTTGCGCCGTGGCTACATCGGCGTGGTGAACCGGTCCCAGAAGGATAT 390 consensus_6486#2 CAAGCTGCTGCCGTTGCGCCGCGGCTACATCGGCGTGGTGAACCGGTCGCAGAAGGATAT 132 ********************* ************************** *********** consensus_6486#0 CGAGGGCAGAAAGGACATCCATGCGGCCCTGGCCGCGGAGCGCAAGTTCTTCCTGAGCCA 1260 consensus_6486#1 CGAGGGCAGAAAGGACATCCATGCGGCCCTGGCCGCGGAGGCAATGTTCTTCCTGAGCCA 450 consensus_6486#2 CGAGGGCAGAAAGGACATCCATGCGGCCCTGGCCGCGGAGCGCAAGTTCTTCCTGAGCCA 192 **************************************** * *************** consensus_6486#0 TCCGAGCTATCGGCACATTGCCGATCGGCTCGGCACGCCGTATCTGCAGAAGGTGCTCAA 1320 consensus_6486#1 TCCGAGCTATCGGCACATTGCCGATCGGCTCGGCACGCCGTATCTGCAGAAGGTGCTCAA 510 consensus_6486#2 TCCGAGCTATCGGCACATTGCCGATCGGCTCGGCACGCCGTATCTGCAGAAGGTGCTCAA 252 ************************************************************ consensus_6486#0 TCAGCAGCTGA------------------------------------------------- 1331 consensus_6486#1 TCAGCAGCTGACCAACCATATCCGTGATACGCTGCCGGCGCTGCGCGATCGGCTACAGAA 570 consensus_6486#2 TCAGCAGCTGACCAACCATATCCGTGATACGCTGCCGGCGCTGCGCGATCGGCTACAGAA 312 *********** consensus_6486#0 ------------------------------------------------------------ consensus_6486#1 GCAGATGCTAACGCTGGAGAAGCATGTGCATCAGTACAAACATTTCC------------- 617 consensus_6486#2 GCAGATGCTAACGCTGGAGAAGGATGTGGATCAGTACAAACATTTCCGCCCGGACGATCC 372 consensus_6486#0 ------------------------------------------------------------ consensus_6486#1 ------------------------------------------------------------ consensus_6486#2 AAGCATCAAGACGAAGGCTATGCTGCAAATGATCCAGCAACTGCAGTCGGATTTCGAGCG 432 consensus_6486#0 ------------------------------------------------------------ consensus_6486#1 ------------------------------------------------------------ consensus_6486#2 CACAATTGAAGGTTCCGGTTCGGCGCTAGTCAACACGAACGAACTTTCTGGCGGTGCCAA 492 consensus_6486#0 ------------------------------------------------------------ consensus_6486#1 ------------------------------------------------------------ consensus_6486#2 GATCAATAGAATATTCCACGAGCGATTGCGTTTCGAGATCGTCAAGATGTCGTGCGACGA 552 consensus_6486#0 ------------------- consensus_6486#1 ------------------- consensus_6486#2 GAAGGAGCTGCGGCGTGAA 571 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||