cluster # 6496

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Anopheles gambiae
cluster # 6496 cluster # 6496 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6496#0 length = 682 sequences # 1

consensus_6496#1 length = 652 sequences # 4

consensusID : consensus_6496#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 682
fasta sequence

                              [TCCTCAGCCAGCAATCCCGCGGTTTAAAGCANCGTATCACAAGCTTAATTGTATGTGCTTTCGAAACGATACTTTCCATATTTGTTAACAACCTGTACTTGCTCTACAATGTGCCCGTTATTTCAAGGAACCAAGATATTGATGAGTTTCGCGAGTGTTNTNAACTTGTTTTGCCCGTTCGGGTCACATTACTACGTTGGATGAGCTGACGGTTAAATAATGCGTACGCTGGGACATATAACTCCCACATTACAAGAGTTGACCCAGGTTATCTGAAGNAGNAAACANTGGCCGTCATGAGCTTCGCAGACTTACTTGAACGTACATGCATCAGCATTCACGAGTGGAAAATCTTCCCGACGAGGTAATAACAGGCGTTCNAAATGCANGGTGACAAAACCAGGTCGANGGTACAATACCACGCTCGGCCAGACTAACGATTCACCCTANCCTATCNAGNAACTACNGCGACGAGNCGAAAACTGTGNCATNAATTCCGTNNANCACNGATCNAANCGGCGTTCGACTACAACTAATAATAACCCNGATTGAAANGCCCAAACTTGGTCAATACNACAGACCAAAATCAGGGNGACCAACTAGATTGACAGCGAGTACAAGCCAGCATAAAACAGTNACGCCGGACACATNANACCAAATTGCAGCNCTCCCGGGTCACCCC]

[+] EMBL AL695122             [TCCTCAGCCAGCAATCCCGCGGTTTAAAGCANCGTATCACAAGCTTAATTGTATGTGCTTTCGAAACGATACTTTCCATATTTGTTAACAACCTGTACTTGCTCTACAATGTGCCCGTTATTTCAAGGAACCAAGATATTGATGAGTTTCGCGAGTGTTNTNAACTTGTTTTGCCCGTTCGGGTCACATTACTACGTTGGATGAGCTGACGGTTAAATAATGCGTACGCTGGGACATATAACTCCCACATTACAAGAGTTGACCCAGGTTATCTGAAGNAGNAAACANTGGCCGTCATGAGCTTCGCAGACTTACTTGAACGTACATGCATCAGCATTCACGAGTGGAAAATCTTCCCGACGAGGTAATAACAGGCGTTCNAAATGCANGGTGACAAAACCAGGTCGANGGTACAATACCACGCTCGGCCAGACTAACGATTCACCCTANCCTATCNAGNAACTACNGCGACGAGNCGAAAACTGTGNCATNAATTCCGTNNANCACNGATCNAANCGGCGTTCGACTACAACTAATAATAACCCNGATTGAAANGCCCAAACTTGGTCAATACNACAGACCAAAATCAGGGNGACCAACTAGATTGACAGCGAGTACAAGCCAGCATAAAACAGTNACGCCGGACACATNANACCAAATTGCAGCNCTCCCGGGTCACCCC]




>consensus_6496#0
TCCTCAGCCAGCAATCCCGCGGTTTAAAGCANCGTATCACAAGCTTAATTGTATGTGCTT
TCGAAACGATACTTTCCATATTTGTTAACAACCTGTACTTGCTCTACAATGTGCCCGTTA
TTTCAAGGAACCAAGATATTGATGAGTTTCGCGAGTGTTNTNAACTTGTTTTGCCCGTTC
GGGTCACATTACTACGTTGGATGAGCTGACGGTTAAATAATGCGTACGCTGGGACATATA
ACTCCCACATTACAAGAGTTGACCCAGGTTATCTGAAGNAGNAAACANTGGCCGTCATGA
GCTTCGCAGACTTACTTGAACGTACATGCATCAGCATTCACGAGTGGAAAATCTTCCCGA
CGAGGTAATAACAGGCGTTCNAAATGCANGGTGACAAAACCAGGTCGANGGTACAATACC
ACGCTCGGCCAGACTAACGATTCACCCTANCCTATCNAGNAACTACNGCGACGAGNCGAA
AACTGTGNCATNAATTCCGTNNANCACNGATCNAANCGGCGTTCGACTACAACTAATAAT
AACCCNGATTGAAANGCCCAAACTTGGTCAATACNACAGACCAAAATCAGGGNGACCAAC
TAGATTGACAGCGAGTACAAGCCAGCATAAAACAGTNACGCCGGACACATNANACCAAAT
TGCAGCNCTCCCGGGTCACCCC

consensusID : consensus_6496#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 652
fasta sequence

                              [CCGCCCACTCGCCCGAGGNT--CGTATCAACAAGTTAATTGTAG-GCTTTCGAAACGATACTTTCCATATTTGTTAACAACCGTACTTGCTCTACAATGGCCCGTTATTTC-AAGGAACAAGATATTGATGAGTTTCGCGAGTGTTTTTACTTGTTTGCCCGTTCGGGTCACATTACTACGTTGGATGAGCTGACGGTAATAATGCGTTCGCTGGGACTTTCT-CCCACCATTCAAGAGTTGACCCAGTATCTGA-AG-AA-GAAAAATGGCCGTATGAGCTTCGCAGACTTTCTTGAAGTCATGCATCAGCATTCACGAGTGGAAAATCTTCCCGACGAGGTAATACAGGCGTTCAAAGCAGGTGACAAAACAGGTCGAGGTACAATACCAGCTCGGCAGCTACGTCACCTTCTTCAGAATT-GGGGCGAAGGGCTATCGTTTCGTGAGGTTGATAATATATTTCGTGAAGCAAATGTTTCAAGCAACGGCCATGTGCGGTACACCGATTTCGTCCGAGTAGCATGCGCTCCGGTTCCCGATTATTATTGATGTATTGTGGAAAGATGAGCAGTTAATA-TTTCAATCAATTT-TTAAA-AGTTACAATAATTTATATTCCATTATT-CTCCGT-AA-CAAAATTGATGTTTAGCCTATAAGATTC]

[+] EMBL BM605173             [CCGCCCACGCGTCCGAG     CGTATCAACAAGTTAATTGTAG GCTTTCGAAACGATACTTTCCATATTTGTTAACAACCGTACTTGCTCTACAATGGCCCGTTATTTC AAGGAACAAGATATTGATGAGTTTCGCGAGTGTTTTTACTTGTTTGCCCGTTCGGGTCACATTACTACGTTGGATGAGCTGACGGTAATAATGCGTTCGCTGGGACTTTCT CCCACCATTCAAGAGTTGACCCAGTATCTGA AG AA GAAAAATGGCCGTATGAGCTTCGCAGACTTTCTTGAAGTCATGCATCAGCATTCACGAGTGGAAAATCTTCCCGACGAGGTAATACAGGCGTTCAAAGCAGGTGACAAAACAGGTCGAGGTACAATACCAGCTCGGCAGCTACGTCACCTTCTTCAGAATT GGGGCGAAGGGCTATCGTTTCGTGAGGTTGATAATATATTTCGTGAAGCAAATGTTTCAAGCAACGGCCATGTGCGGTACACCGATTTCGTCCGAGTAGCATGCGCTCCGGTTCCCGATTATTATTGATGTATTGTGGAAAGATGAGCAGTTAATA TTTCAATCAATTT TTAAA AGTTACAATAATTTATATTCCATTATT CTCCGT AA CAAAATTGATGTT               ]
[+] EMBL AL932960             [        TCGCCCGAGGNTAACGTATC ACAAGTT ATTGTAG GC TTCGAAACGATACTTTCCATATTTGTTAACAACCGTACTTGCTCTACAATGGCCCGTTATTTCAAAGGAACAAGATATTGATGAGTTTCGCGAGTGTTTTTACTTGTTCGCCCGTTCGGGACACATTACTACGTTGGATGAGCTGACGGTAATAATGCGTTCGCTGGGACTTTCT CCCACCATTCAAGAGTTGACCCAGTATCTGA AG AA GAAAAATGGCCGTATGAGTTTCGCAGACTTTCTTGAAGTCATGCATCAGCATTCACGAGTGGAAAATCTTCCCGACGAGGTAATACAGGCGTTCAAAGCAGGTGACAAAACAGGTCGAGGTACAATACCAGCTCGGCAGCTACGTCACCTTCTTCAGAATTCGGGGCGAAGGGCTATCGTTTCGTGAGGTTGATAATATATTTCGTGAAGCAAATGTTTCAAGCAACGGCCATGTGCGGTACACCGATTTCGTCCGAGTAGCATGCGCTCCGGTTCCCGATTATTATTGATGTATTGTGGAAAGATGAGCAGTTAATATTTTCAATCAATTTCTCAAACANTTACAATAATTNATATTCCATTATTCCTCCGTCAACCAAAATTGATGGTTAGCCTATAAGATTC]
[+] EMBL AL695735             [        tnGCCCGAGGNT  NGTATC ACAAGTTAATTGTAGNGCTTTCGAAACGATACTTTCCATATTTGTTAACAACCGTACTTGCTCTACAATGGCCCGTTATTTC AAGGAACAAGATATTGATGAGTTTCGCGAGTGTTTTTACTTGTTTGCCCGTTCGGGTCACATTACTACGTTGGATGAGCTGACGGTAATAATGCGTTCGCTGGGACTTTCTACCCACCATTCAAGAGTTGACCCAGTATCTGACAGCAACGAAAAATGGCCGTATGAGCTTCGCAGACTTTCTTGAAGTCATGCATCAGCATTCACGAGTGGAAAATCTTCCCGACGAGGTAATACAGGCGTTCAAAGCAGGTGACAAAACAGGTCGAGGTACAATACCAGCTCGGCAGCTACGTCACCTTCTTCAGAATT GGGGCGAAGGGCTATCGTTTCGTGAGGTTGATAATATATTTCGTGAAGCAAATGTTTCAAGCAACG                                                                                                                                                                                 ]
[+] EMBL BM594674             [            ccgcgaag  CGTATCAACAAGTTAATTGTAG GCTTTCGAAACGATACTTTCCATATTTGTTAACAACCGTACTTGCTCTACAATGGCCCGTTATTTC AAGGAACAAGATATTGATGAGTTTCGCGAGTGTTTTTACTTGTTCGCCCGTTCGGGACACATTACTACGTTGGATGAGCTGACGGTAATAATGCGTTCGCTGGGACTTTCT CCCACCATTCAAGAGTTGACCCAGTATCTGA AG AA GAAAAATGGCCGTATGAGCTTCGCAGACTTTCTTGAAGTCATGCATCAGCATTCACGAGTGGAAAATCTTCCCGACGAGGTAATACAGGCGTTCAAAGCAGGTGACAAAACAGGTCGAGGTACAATACCAGCTCGGCAGCTACGTCACCTTCTTCAGAATT GGGGCGAAGGGCTATCGTTTCGTGAGGTTGATAATATATTTCGTGAAGCAAATGTTTCAAGCAACGGCCATGTGCGGTACACCGATTTCGTCCGAGTAGCATGCGCTCCGGTTCCCGATTATTATTGATGTATTGTGGAAAGATGAGCAGTTAATA TTTCAATCAATTT TTAAA AGTTACAATAATTTATATTCCATTATT CTCCGT AA CAAAATTGATGT                ]




>consensus_6496#1
CCGCCCACTCGCCCGAGGNTCGTATCAACAAGTTAATTGTAGGCTTTCGAAACGATACTT
TCCATATTTGTTAACAACCGTACTTGCTCTACAATGGCCCGTTATTTCAAGGAACAAGAT
ATTGATGAGTTTCGCGAGTGTTTTTACTTGTTTGCCCGTTCGGGTCACATTACTACGTTG
GATGAGCTGACGGTAATAATGCGTTCGCTGGGACTTTCTCCCACCATTCAAGAGTTGACC
CAGTATCTGAAGAAGAAAAATGGCCGTATGAGCTTCGCAGACTTTCTTGAAGTCATGCAT
CAGCATTCACGAGTGGAAAATCTTCCCGACGAGGTAATACAGGCGTTCAAAGCAGGTGAC
AAAACAGGTCGAGGTACAATACCAGCTCGGCAGCTACGTCACCTTCTTCAGAATTGGGGC
GAAGGGCTATCGTTTCGTGAGGTTGATAATATATTTCGTGAAGCAAATGTTTCAAGCAAC
GGCCATGTGCGGTACACCGATTTCGTCCGAGTAGCATGCGCTCCGGTTCCCGATTATTAT
TGATGTATTGTGGAAAGATGAGCAGTTAATATTTCAATCAATTTTTAAAAGTTACAATAA
TTTATATTCCATTATTCTCCGTAACAAAATTGATGTTTAGCCTATAAGATTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6496#0      TCCTCAGCCAGCAATCCCGCGGTTTAAAGCANCGTATCACAAGCTTAATTGTATGTGCTT 60
consensus_6496#1      -----------CCGCCCACTCGCCCGAGGN-TCGTATCAACAAGTTAATTGTAGG--CTT 46
                                 *   **    *    * *   *******  *  ********* *  ***

consensus_6496#0      TCGAAACGATACTTTCCATATTTGTTAACAACCTGTACTTGCTCTACAATGTGCCCGTTA 120
consensus_6496#1      TCGAAACGATACTTTCCATATTTGTTAACAACC-GTACTTGCTCTACAATG-GCCCGTTA 104
                      ********************************* ***************** ********

consensus_6496#0      TTTCAAGGAACCAAGATATTGATGAGTTTCGCGAGTGTTNTNAACTTGTTTTGCCCGTTC 180
consensus_6496#1      TTTCAAGGAAC-AAGATATTGATGAGTTTCGCGAGTGTTTTTA-CTTGTTT-GCCCGTTC 161
                      *********** *************************** * * ******* ********

consensus_6496#0      GGGTCACATTACTACGTTGGATGAGCTGACGGTTAAATAATGCGTACGCTGGGACATATA 240
consensus_6496#1      GGGTCACATTACTACGTTGGATGAGCTGACGGT--AATAATGCGTTCGCTGGGACTTT-- 217
                      *********************************  ********** ********* *   

consensus_6496#0      ACTCCCACATTACAAGAGTTGACCCAGGTTATCTGAAGNAGNAAACANTGGCCGTCATGA 300
consensus_6496#1      -CTCCCACCATTCAAGAGTTGACCCAG--TATCTGAAGAAGAAAA--ATGGCCGT-ATGA 271
                       *******  * ***************  ********* ** ***   ******* ****

consensus_6496#0      GCTTCGCAGACTTACTTGAACGTACATGCATCAGCATTCACGAGTGGAAAATCTTCCCGA 360
consensus_6496#1      GCTTCGCAGACTTTCTTGAA-GT-CATGCATCAGCATTCACGAGTGGAAAATCTTCCCGA 329
                      ************* ****** ** ************************************

consensus_6496#0      CGAGGTAATAACAGGCGTTCNAAATGCANGGTGACAAAACCAGGTCGANGGTACAATACC 420
consensus_6496#1      CGAGGTAATA-CAGGCGTTCAAAGC---AGGTGACAAAAC-AGGTCGAGG-TACAATACC 383
                      ********** ********* **      *********** ******* * *********

consensus_6496#0      ACGCTCGGCCAGACTAACGATTCACCCTANCCTATCNAGNAACTACNGCGACGAGNCGAA 480
consensus_6496#1      A-GCTCGGC---AGCTACGTCACCTTCTTCAGAATTGGGGCGAAGGGCTATCGTTTCGTG 439
                      * *******   *   ***   *   **     **   *            **   **  

consensus_6496#0      AACTGTGNCATNAATTCCGTNNANCACN-GATCNAANCGGCGTTCGACTACA----ACTA 535
consensus_6496#1      AGGTTGATAATATATTTCGTGAAGCAAATGTTTCAAGCAACGGCCATGTGCGGTACACCG 499
                      *  *     **  *** ***  * **   * *  ** *  **  *   * *     **  

consensus_6496#0      ATAATAACCCNGATTGAAANGCCCAAACTT--GGTCAATACNACAGACCAAAATCAGGGN 593
consensus_6496#1      ATTTCGTCCGAGTAGCATGCGCTCCGGTTCCCGATTATTATTGATGTATTGTGGAAAGAT 559
                      **     **  *    *   ** *    *   * * * **     *         * *  

consensus_6496#0      GACCAACTAGATTGACAGCGAGT----ACAAGCCAGCATAAAACAGTNACGCCGGACACA 649
consensus_6496#1      GAGCAGTTAATATTTCAATCAATTTTTAAAAGTTACAATAATTTATATTCCATTATTCTC 619
                      ** **  **   *  **   * *    * ***  *  ****   *    *          

consensus_6496#0      TNANACCAAATTGCAGCNCTCCCGGGTCACCCC 682
consensus_6496#1      CGTAACAAAATTGATGTTTAGCCTATAAGATTC 652
                          ** ******  *     **         *