These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6496#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence [TCCTCAGCCAGCAATCCCGCGGTTTAAAGCANCGTATCACAAGCTTAATTGTATGTGCTTTCGAAACGATACTTTCCATATTTGTTAACAACCTGTACTTGCTCTACAATGTGCCCGTTATTTCAAGGAACCAAGATATTGATGAGTTTCGCGAGTGTTNTNAACTTGTTTTGCCCGTTCGGGTCACATTACTACGTTGGATGAGCTGACGGTTAAATAATGCGTACGCTGGGACATATAACTCCCACATTACAAGAGTTGACCCAGGTTATCTGAAGNAGNAAACANTGGCCGTCATGAGCTTCGCAGACTTACTTGAACGTACATGCATCAGCATTCACGAGTGGAAAATCTTCCCGACGAGGTAATAACAGGCGTTCNAAATGCANGGTGACAAAACCAGGTCGANGGTACAATACCACGCTCGGCCAGACTAACGATTCACCCTANCCTATCNAGNAACTACNGCGACGAGNCGAAAACTGTGNCATNAATTCCGTNNANCACNGATCNAANCGGCGTTCGACTACAACTAATAATAACCCNGATTGAAANGCCCAAACTTGGTCAATACNACAGACCAAAATCAGGGNGACCAACTAGATTGACAGCGAGTACAAGCCAGCATAAAACAGTNACGCCGGACACATNANACCAAATTGCAGCNCTCCCGGGTCACCCC] [+] EMBL AL695122 [TCCTCAGCCAGCAATCCCGCGGTTTAAAGCANCGTATCACAAGCTTAATTGTATGTGCTTTCGAAACGATACTTTCCATATTTGTTAACAACCTGTACTTGCTCTACAATGTGCCCGTTATTTCAAGGAACCAAGATATTGATGAGTTTCGCGAGTGTTNTNAACTTGTTTTGCCCGTTCGGGTCACATTACTACGTTGGATGAGCTGACGGTTAAATAATGCGTACGCTGGGACATATAACTCCCACATTACAAGAGTTGACCCAGGTTATCTGAAGNAGNAAACANTGGCCGTCATGAGCTTCGCAGACTTACTTGAACGTACATGCATCAGCATTCACGAGTGGAAAATCTTCCCGACGAGGTAATAACAGGCGTTCNAAATGCANGGTGACAAAACCAGGTCGANGGTACAATACCACGCTCGGCCAGACTAACGATTCACCCTANCCTATCNAGNAACTACNGCGACGAGNCGAAAACTGTGNCATNAATTCCGTNNANCACNGATCNAANCGGCGTTCGACTACAACTAATAATAACCCNGATTGAAANGCCCAAACTTGGTCAATACNACAGACCAAAATCAGGGNGACCAACTAGATTGACAGCGAGTACAAGCCAGCATAAAACAGTNACGCCGGACACATNANACCAAATTGCAGCNCTCCCGGGTCACCCC] consensusID : consensus_6496#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 652 fasta sequence [CCGCCCACTCGCCCGAGGNT--CGTATCAACAAGTTAATTGTAG-GCTTTCGAAACGATACTTTCCATATTTGTTAACAACCGTACTTGCTCTACAATGGCCCGTTATTTC-AAGGAACAAGATATTGATGAGTTTCGCGAGTGTTTTTACTTGTTTGCCCGTTCGGGTCACATTACTACGTTGGATGAGCTGACGGTAATAATGCGTTCGCTGGGACTTTCT-CCCACCATTCAAGAGTTGACCCAGTATCTGA-AG-AA-GAAAAATGGCCGTATGAGCTTCGCAGACTTTCTTGAAGTCATGCATCAGCATTCACGAGTGGAAAATCTTCCCGACGAGGTAATACAGGCGTTCAAAGCAGGTGACAAAACAGGTCGAGGTACAATACCAGCTCGGCAGCTACGTCACCTTCTTCAGAATT-GGGGCGAAGGGCTATCGTTTCGTGAGGTTGATAATATATTTCGTGAAGCAAATGTTTCAAGCAACGGCCATGTGCGGTACACCGATTTCGTCCGAGTAGCATGCGCTCCGGTTCCCGATTATTATTGATGTATTGTGGAAAGATGAGCAGTTAATA-TTTCAATCAATTT-TTAAA-AGTTACAATAATTTATATTCCATTATT-CTCCGT-AA-CAAAATTGATGTTTAGCCTATAAGATTC] [+] EMBL BM605173 [CCGCCCACGCGTCCGAG CGTATCAACAAGTTAATTGTAG GCTTTCGAAACGATACTTTCCATATTTGTTAACAACCGTACTTGCTCTACAATGGCCCGTTATTTC AAGGAACAAGATATTGATGAGTTTCGCGAGTGTTTTTACTTGTTTGCCCGTTCGGGTCACATTACTACGTTGGATGAGCTGACGGTAATAATGCGTTCGCTGGGACTTTCT CCCACCATTCAAGAGTTGACCCAGTATCTGA AG AA GAAAAATGGCCGTATGAGCTTCGCAGACTTTCTTGAAGTCATGCATCAGCATTCACGAGTGGAAAATCTTCCCGACGAGGTAATACAGGCGTTCAAAGCAGGTGACAAAACAGGTCGAGGTACAATACCAGCTCGGCAGCTACGTCACCTTCTTCAGAATT GGGGCGAAGGGCTATCGTTTCGTGAGGTTGATAATATATTTCGTGAAGCAAATGTTTCAAGCAACGGCCATGTGCGGTACACCGATTTCGTCCGAGTAGCATGCGCTCCGGTTCCCGATTATTATTGATGTATTGTGGAAAGATGAGCAGTTAATA TTTCAATCAATTT TTAAA AGTTACAATAATTTATATTCCATTATT CTCCGT AA CAAAATTGATGTT ] [+] EMBL AL932960 [ TCGCCCGAGGNTAACGTATC ACAAGTT ATTGTAG GC TTCGAAACGATACTTTCCATATTTGTTAACAACCGTACTTGCTCTACAATGGCCCGTTATTTCAAAGGAACAAGATATTGATGAGTTTCGCGAGTGTTTTTACTTGTTCGCCCGTTCGGGACACATTACTACGTTGGATGAGCTGACGGTAATAATGCGTTCGCTGGGACTTTCT CCCACCATTCAAGAGTTGACCCAGTATCTGA AG AA GAAAAATGGCCGTATGAGTTTCGCAGACTTTCTTGAAGTCATGCATCAGCATTCACGAGTGGAAAATCTTCCCGACGAGGTAATACAGGCGTTCAAAGCAGGTGACAAAACAGGTCGAGGTACAATACCAGCTCGGCAGCTACGTCACCTTCTTCAGAATTCGGGGCGAAGGGCTATCGTTTCGTGAGGTTGATAATATATTTCGTGAAGCAAATGTTTCAAGCAACGGCCATGTGCGGTACACCGATTTCGTCCGAGTAGCATGCGCTCCGGTTCCCGATTATTATTGATGTATTGTGGAAAGATGAGCAGTTAATATTTTCAATCAATTTCTCAAACANTTACAATAATTNATATTCCATTATTCCTCCGTCAACCAAAATTGATGGTTAGCCTATAAGATTC] [+] EMBL AL695735 [ tnGCCCGAGGNT NGTATC ACAAGTTAATTGTAGNGCTTTCGAAACGATACTTTCCATATTTGTTAACAACCGTACTTGCTCTACAATGGCCCGTTATTTC AAGGAACAAGATATTGATGAGTTTCGCGAGTGTTTTTACTTGTTTGCCCGTTCGGGTCACATTACTACGTTGGATGAGCTGACGGTAATAATGCGTTCGCTGGGACTTTCTACCCACCATTCAAGAGTTGACCCAGTATCTGACAGCAACGAAAAATGGCCGTATGAGCTTCGCAGACTTTCTTGAAGTCATGCATCAGCATTCACGAGTGGAAAATCTTCCCGACGAGGTAATACAGGCGTTCAAAGCAGGTGACAAAACAGGTCGAGGTACAATACCAGCTCGGCAGCTACGTCACCTTCTTCAGAATT GGGGCGAAGGGCTATCGTTTCGTGAGGTTGATAATATATTTCGTGAAGCAAATGTTTCAAGCAACG ] [+] EMBL BM594674 [ ccgcgaag CGTATCAACAAGTTAATTGTAG GCTTTCGAAACGATACTTTCCATATTTGTTAACAACCGTACTTGCTCTACAATGGCCCGTTATTTC AAGGAACAAGATATTGATGAGTTTCGCGAGTGTTTTTACTTGTTCGCCCGTTCGGGACACATTACTACGTTGGATGAGCTGACGGTAATAATGCGTTCGCTGGGACTTTCT CCCACCATTCAAGAGTTGACCCAGTATCTGA AG AA GAAAAATGGCCGTATGAGCTTCGCAGACTTTCTTGAAGTCATGCATCAGCATTCACGAGTGGAAAATCTTCCCGACGAGGTAATACAGGCGTTCAAAGCAGGTGACAAAACAGGTCGAGGTACAATACCAGCTCGGCAGCTACGTCACCTTCTTCAGAATT GGGGCGAAGGGCTATCGTTTCGTGAGGTTGATAATATATTTCGTGAAGCAAATGTTTCAAGCAACGGCCATGTGCGGTACACCGATTTCGTCCGAGTAGCATGCGCTCCGGTTCCCGATTATTATTGATGTATTGTGGAAAGATGAGCAGTTAATA TTTCAATCAATTT TTAAA AGTTACAATAATTTATATTCCATTATT CTCCGT AA CAAAATTGATGT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6496#0 TCCTCAGCCAGCAATCCCGCGGTTTAAAGCANCGTATCACAAGCTTAATTGTATGTGCTT 60 consensus_6496#1 -----------CCGCCCACTCGCCCGAGGN-TCGTATCAACAAGTTAATTGTAGG--CTT 46 * ** * * * ******* * ********* * *** consensus_6496#0 TCGAAACGATACTTTCCATATTTGTTAACAACCTGTACTTGCTCTACAATGTGCCCGTTA 120 consensus_6496#1 TCGAAACGATACTTTCCATATTTGTTAACAACC-GTACTTGCTCTACAATG-GCCCGTTA 104 ********************************* ***************** ******** consensus_6496#0 TTTCAAGGAACCAAGATATTGATGAGTTTCGCGAGTGTTNTNAACTTGTTTTGCCCGTTC 180 consensus_6496#1 TTTCAAGGAAC-AAGATATTGATGAGTTTCGCGAGTGTTTTTA-CTTGTTT-GCCCGTTC 161 *********** *************************** * * ******* ******** consensus_6496#0 GGGTCACATTACTACGTTGGATGAGCTGACGGTTAAATAATGCGTACGCTGGGACATATA 240 consensus_6496#1 GGGTCACATTACTACGTTGGATGAGCTGACGGT--AATAATGCGTTCGCTGGGACTTT-- 217 ********************************* ********** ********* * consensus_6496#0 ACTCCCACATTACAAGAGTTGACCCAGGTTATCTGAAGNAGNAAACANTGGCCGTCATGA 300 consensus_6496#1 -CTCCCACCATTCAAGAGTTGACCCAG--TATCTGAAGAAGAAAA--ATGGCCGT-ATGA 271 ******* * *************** ********* ** *** ******* **** consensus_6496#0 GCTTCGCAGACTTACTTGAACGTACATGCATCAGCATTCACGAGTGGAAAATCTTCCCGA 360 consensus_6496#1 GCTTCGCAGACTTTCTTGAA-GT-CATGCATCAGCATTCACGAGTGGAAAATCTTCCCGA 329 ************* ****** ** ************************************ consensus_6496#0 CGAGGTAATAACAGGCGTTCNAAATGCANGGTGACAAAACCAGGTCGANGGTACAATACC 420 consensus_6496#1 CGAGGTAATA-CAGGCGTTCAAAGC---AGGTGACAAAAC-AGGTCGAGG-TACAATACC 383 ********** ********* ** *********** ******* * ********* consensus_6496#0 ACGCTCGGCCAGACTAACGATTCACCCTANCCTATCNAGNAACTACNGCGACGAGNCGAA 480 consensus_6496#1 A-GCTCGGC---AGCTACGTCACCTTCTTCAGAATTGGGGCGAAGGGCTATCGTTTCGTG 439 * ******* * *** * ** ** * ** ** consensus_6496#0 AACTGTGNCATNAATTCCGTNNANCACN-GATCNAANCGGCGTTCGACTACA----ACTA 535 consensus_6496#1 AGGTTGATAATATATTTCGTGAAGCAAATGTTTCAAGCAACGGCCATGTGCGGTACACCG 499 * * ** *** *** * ** * * ** * ** * * * ** consensus_6496#0 ATAATAACCCNGATTGAAANGCCCAAACTT--GGTCAATACNACAGACCAAAATCAGGGN 593 consensus_6496#1 ATTTCGTCCGAGTAGCATGCGCTCCGGTTCCCGATTATTATTGATGTATTGTGGAAAGAT 559 ** ** * * ** * * * * * ** * * * consensus_6496#0 GACCAACTAGATTGACAGCGAGT----ACAAGCCAGCATAAAACAGTNACGCCGGACACA 649 consensus_6496#1 GAGCAGTTAATATTTCAATCAATTTTTAAAAGTTACAATAATTTATATTCCATTATTCTC 619 ** ** ** * ** * * * *** * **** * * consensus_6496#0 TNANACCAAATTGCAGCNCTCCCGGGTCACCCC 682 consensus_6496#1 CGTAACAAAATTGATGTTTAGCCTATAAGATTC 652 ** ****** * ** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||