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Anopheles gambiae
cluster # 6500 cluster # 6500       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6500#0 length = 1407 sequences # 4  
consensus_6500#1 length = 494 sequences # 1  

consensusID : consensus_6500#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1407
fasta sequence
                              [CTGGGGTAAAAGCAAATGTACCACAGATACCACCGTTCCACAGAAGCGTGGCTGTGCGCCGGTCAAGATGGACAAAAAGAAGGTAGTGAAAAAGACGAGCGAAAAGGCAAAAGATAGACTGAAATCCGTCTGGAGCAAGCTGGAGGGCAGGGAGTGTGGCGTTGCGACCGATCTGCTGATCGATGGGCCGGTCAAAAGTGGCACCAAGCTGCGCTTCCACACACGAACGATCGATCTGATCAACGATAATGCCGTTTAGTGGATCGCACGGGACAACAAACACTCACCCGTTGCTTCGTCCCCGGATCCTATACTACTAGTGCACTGCTAACGCGACTACCAGAAGATTTAAACGTTAGTTTTGTACCACACCACACATATACTCTCTCGCTCTCTTTAGCATAGCCCTGCGAGAGAGGAGAGATAGTGAAAGCGGAATAGAAAGGCAGGCAGTGTGCAGCAGTTCTGGCCGGAATGCAAACGGAATTCGAATGCATTACTAGTGGCCCTAGACGCACACTCACCCTATACGCCTGGTCGTTTCCGCTGTGCAATTAATCGATAGTTAGGTAAATG--TTTTTTTTTGTGTTTTGTAGTATTCGTATTTTGGGCGACGTGTTTGAAGCGTTCGCAACACTCCATCCCCCGCCCATTTGCTAGACAAAGCAGATCTCACAACCGATTATAACCCACCTGCCCGAACTCTGTTGTACACCGCACCGGGCAGTGATTGTGCGATTGATGGTGTGCGTGTGTGCGTGCGTGTGTTGACGTGCTTGTATGTGTGTATTTT-CCCCCAGATGTTTTTTTTATTACTTCATTTTCCCACATCCTTAAACTGTGCATCGCGTGGCGCATACTAACTCATTAGTCAACAGTCAACAGTTCTGTTCAGTGAAGATTAGAATGCGCAACGTGCCACATGCATACATGATGATACAGCTATATTTTAGTAACGATTTCCGTTCAGTAGTAGTACATTGTGTAATAGTGTGATTTTAAAAGCAAAA-TGCAAAAAAAAACGACGGAACGAGAATCATCCAACACCACTACCATGTGCGTGAGATGACGCACGTGGAGCTACCAAAGCGCGGGAAACAGAACAGGCCAGAACAGGGGCACTGCATCCATTGGCAGCTGGAAAAAGGGGGGAAGAGGGGGCAGCCCGTCTGATGTGAAGGAGACTAAAAAGAAATTATGGTTTATAATGTATTTAAAAAGACGATTCGTTTTGAGCTTAAGTAGCGTACCCTCGTGAATACTATTGGCGCCAATTCGGGTACAATTCGGGGTGGGCGGGGTAGGTAGCAGTAGAAGGTAGAGAGTGCGCCGAGTAGAGTCGAAAGAGTGTCCTCGAATTCGGTGATGCCTAGCAATAAATATAATCTTTTTACGTTCTACCAACAA]

[+] EMBL CNS09DQV             [CTGGGGTAAAAGCAAATGTACCACAGATACCACCGTTCCACAGAAGCGTGGCTGTGCGCCGGTCAAGATGGACAAAAAGAAGGTAGTGAAAAAGACGAGCGAAAAGGCAAAAGATAGACTGAAATCCGTCTGGAGCAAGCTGGAGGGCAGGGAGTGTGGCGTTGCGACCGATCTGCTGATCGATGGGCCGGTCAAAAGTGGCACCAAGCTGCGCTTCCACACACGAACGATCGATCTGATCAACGATAATGCCGTTTAGTGGATCGCACGGGACAACAAACACTCACCCGTTGCTTCGTCCCCGGATCCTATACTACTAGTGCACTGCTAACGCGACTACCAGAAGATTTAAACGTTAGTTTTGTACCACACCACACATATACTCTCTCGCTCTCTTTAGCATAGCCCTGCGAGAGAGGAGAGATAGTGAAAGCGGAATAGAAAGGCAGGCAGTGTGCAGCAGTTCTGGCCGGAATGCAAACGGAATTCGAATGCATTACTAGTGGCCCTAGACGCACACTCACCCTATACGCCTGGTCGTTTCCGCTGTGCAATTAATCGATAGTTAGGTAAATG  TTTTTTTTTGTGTTTTGTAGTATTCGTATTTTGGGCGACGTGTTTGAAGCGTTCGCAACACTCCATCCCCCGCCCATTTGCTAGACAAAGCAGATCTCACAACCGATTATAACCCACCTGCCCGAACTCTGTTGTACACCGCACCGGGCAGTGATTGTGCGATTGATGGTGTGCGTGTGTGCGTGCGTGTGTTGACGTGCTTGTATGTGTGTATTTT CCCCCAGATGTTTTTTTTATTACTTCATTTTCCCACATCCTTAAACTGTGCATCGCGTGGCGCATACTAACTCATTAGTCAACAGTCAACAGTTCTGTTCAGTGAAGATTAGAATGCGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BX608072             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AATGCAAACGCAATTCGAATGCATTACTAGTGGCCCTAGACGCACACTCACCCTATACGCCTGGCCGTTTCTGCTGTGCAATTAATCGATAGTTTGGTAAATGTTTTTTTTTTTGTGTTTTGTAGTATTCGTATTTTGGGCGACGTGTTTGAAGCGTTCGCGACACTCCATCCCCCGCCCGTTTGCTAGACAAAGCAGATCTCACAACGGATTATAACCCACCTGCCCGAACTCTGTTGTACACCGCACCGGGCAGTGATTGTGCGATTGATGGTGT  GTGTGTGCGTGCGTGTGTTGACGTGCTTGTATGTGTGTATTTT CCCCCAGATG  TTTTTTATTACCTTATTTTCCCACATCCTTAAACTGTGCATCGCGTAGCGCATACTAACTCATTAGTCAACAGACAATAGTTCTGTTCAGTGAAGATTAGAATGCGCAACGTGCCACATGCAGACATGATGATACAGCTATATTTTAGTAACGATTTCCGTTCAGTAGTAGTACATTGTGAAATAGTCTGATTTTAAAAGCAAAA                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CNS09DQW             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TAGTGGCCCTAGACGCACACTCACCCTATACGCCTGGTCGTTTCCGCTGTGCAATTAATCGATAGTTAGGTAAATG  TTTTTTTTTGTGTTTTGTAGTATTCGTATTTTGGGCGACGTGTTTGAAGCGTTCGCAAAACTCCATCCCCCGCCCATTTGCTAGACAAAGCAGATCTCACAACCGATTATAACCCACCTGCCCGAACTCTGTTGTACACCGCACCGGGCAGTGATTGTGCGATTGATGGTGTGCGTGTGTGCGTGCGTGTGTTGACGTGCTTGTATGTGTGTATTTT CCCCCAGATGTTTTTTTTATTACTTCATTTTCCCACATCCTTAAACTGTGCATCGCGTGGCGCATACTAACTCATTAGTCAACAGTCAACAGTTCTGTTCAGTGAAGATTAGAATGCGCAACGTGCCACATGCATACATGATGATACAGCTATATTTTAGTAACGATTTCCGTTCAGTAGTAGTACATTGTGTAATAGTGTGATTTTAAAAGCAAAA TGCAAAAAAAAACGACGGAACGAGAATCATCCAACACCACTACCATGTGCGTGAGATGACGCACGTGGAGCTACCAAAGCGCGGGAAACAGAACAGGCCAGAACAGGGGCACTGCATCCATTGGCAGCTGGAAAAAGGGGGGAAGAGGGGGCAGCCCGTCTGATGTGAAGGAGACTAAAAAGAAATTATGGTTTATAATGTATTTAAAAAGACGATTCGTTTTGAGCTTAAGTAGCGTACCCTCGTGAATACTATTGGCGCCAATTCGGGTACAATTCGGGGTGGGCGGGGTAGGTAGCAGTAGAAGGTAGAGAGTGCGCCGAGTAGAGTCGAAAGAGTGTCCTCGAATTCGGTGATGCCTAGCAATAAATATAATCTTTTTACGTTCTACCAACAA]
[-] EMBL CNS08DNK             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ACCCTATACGCCTGGTCGTTTCCGCTGTGCAATTAATCGATAGTTAGGTAAATG  TTTTTTTTTGTGTTTTGTAGTATTCGTATTTTGGGCGACGTGTTTGAAGCGTTCGCAACACTCCATCCCCCGCCCATTTGCTAGACAAAGCAGATCTCACAACCGATTATAACCCACCTGCCCGGACTAAGTTGTACACCGCCCCGGGCGGTGATTGTGCGATTGATGGTGTGCGTGTGTGCGTGCGTGTGTTGGGAAACTTGTATGTGTGTATTTTCCCCCCAGATGTTTTTTTTATTACTTCATTTTCCCACATCCTTAAACTGTGCATCGCGTAGCGCATACTAACTCATTAGTCAACAGTCAACAGTTCTGTTCAGTGAAGATTAGAATGCGCAACGTGCCACATGCATACATGATGATACAGCTATATTTTAGTAACGATTTCCGTTCAGTAGTAGTACATTGTGTAATAGTGTGATTTTAAAAGCAAAAGTGCAAAAAAAAACGACGGAACGAGAATCATCCAACACCACTACCATGTGCGTGAGATAACGCACGTGGAGCTACCAAAGCGCGGGAAACAGAACAGGCCAGAACAGGGGCACTGCATCCATTGGCAGCTGGAAAAAGGGGGGAAGAGGGGGCAGCCCGTCTGATGTGAAGGAGACTAAAAAGAAATTATGGTTTATAATGTATTTAAAAAGACGATTCGTTTTGAGCTTAAGTAGCGTACCCTCGTGAATACTATTGGCGCCAATTCGGGTACAATTCGGGGTGGGCGGGGTAGGTAGCAGTAGAAGGTAGAGAGTGCGCCGAGTAGAGTCGAAAGAGTGTCCTCGAATTCGGTGATGCCTAGCAATAAATATA                       ]


>consensus_6500#0 CTGGGGTAAAAGCAAATGTACCACAGATACCACCGTTCCACAGAAGCGTGGCTGTGCGCC GGTCAAGATGGACAAAAAGAAGGTAGTGAAAAAGACGAGCGAAAAGGCAAAAGATAGACT GAAATCCGTCTGGAGCAAGCTGGAGGGCAGGGAGTGTGGCGTTGCGACCGATCTGCTGAT CGATGGGCCGGTCAAAAGTGGCACCAAGCTGCGCTTCCACACACGAACGATCGATCTGAT CAACGATAATGCCGTTTAGTGGATCGCACGGGACAACAAACACTCACCCGTTGCTTCGTC CCCGGATCCTATACTACTAGTGCACTGCTAACGCGACTACCAGAAGATTTAAACGTTAGT TTTGTACCACACCACACATATACTCTCTCGCTCTCTTTAGCATAGCCCTGCGAGAGAGGA GAGATAGTGAAAGCGGAATAGAAAGGCAGGCAGTGTGCAGCAGTTCTGGCCGGAATGCAA ACGGAATTCGAATGCATTACTAGTGGCCCTAGACGCACACTCACCCTATACGCCTGGTCG TTTCCGCTGTGCAATTAATCGATAGTTAGGTAAATGTTTTTTTTTGTGTTTTGTAGTATT CGTATTTTGGGCGACGTGTTTGAAGCGTTCGCAACACTCCATCCCCCGCCCATTTGCTAG ACAAAGCAGATCTCACAACCGATTATAACCCACCTGCCCGAACTCTGTTGTACACCGCAC CGGGCAGTGATTGTGCGATTGATGGTGTGCGTGTGTGCGTGCGTGTGTTGACGTGCTTGT ATGTGTGTATTTTCCCCCAGATGTTTTTTTTATTACTTCATTTTCCCACATCCTTAAACT GTGCATCGCGTGGCGCATACTAACTCATTAGTCAACAGTCAACAGTTCTGTTCAGTGAAG ATTAGAATGCGCAACGTGCCACATGCATACATGATGATACAGCTATATTTTAGTAACGAT TTCCGTTCAGTAGTAGTACATTGTGTAATAGTGTGATTTTAAAAGCAAAATGCAAAAAAA AACGACGGAACGAGAATCATCCAACACCACTACCATGTGCGTGAGATGACGCACGTGGAG CTACCAAAGCGCGGGAAACAGAACAGGCCAGAACAGGGGCACTGCATCCATTGGCAGCTG GAAAAAGGGGGGAAGAGGGGGCAGCCCGTCTGATGTGAAGGAGACTAAAAAGAAATTATG GTTTATAATGTATTTAAAAAGACGATTCGTTTTGAGCTTAAGTAGCGTACCCTCGTGAAT ACTATTGGCGCCAATTCGGGTACAATTCGGGGTGGGCGGGGTAGGTAGCAGTAGAAGGTA GAGAGTGCGCCGAGTAGAGTCGAAAGAGTGTCCTCGAATTCGGTGATGCCTAGCAATAAA TATAATCTTTTTACGTTCTACCAACAA



consensusID : consensus_6500#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 494
fasta sequence
                              [GCAGAATNGCCCCGAGGTTNTCACCCGTTGCTTCGTCCCCGGATCTATACTACTAGTGCACTGCTAACGCGACTACCGGAAGGTTTAAACGTTAGTTTTGTACCACACCACACATATACTCTCTCGCTCTCTTTAGCATAGCCTTGCGAGAGAGGAGAGATAGTGAAAGCGGAATAGAAAGGCAGGCAGTGTGCAGCAGTTCTGGCCGGAATGCAAACGCAATTCGAATGCATTACTAGTGGCCCTAGACGCACACTCACCCTATACGCCTGGCCGTTTCTGCTGTGCAATTAATCGATAGTTAGGTAAATGTTTTTTTTCTTTTTTTGTAGTATTCGTATTTTTGGGCTGACTGTGTTTGAAGCGTTCGCGACACTCCATCCCCCGCCGTTTTGCTAGACAAAGCAGATCTCACAACTGGATTATAACCCACTGCCCGAACTCTGTTGTACACCGACCGGGCAGTGATTGTGCGATTGATGGTGTGTGTGTGC]

[+] EMBL AL931516             [GCAGAATNGCCCCGAGGTTNTCACCCGTTGCTTCGTCCCCGGATCTATACTACTAGTGCACTGCTAACGCGACTACCGGAAGGTTTAAACGTTAGTTTTGTACCACACCACACATATACTCTCTCGCTCTCTTTAGCATAGCCTTGCGAGAGAGGAGAGATAGTGAAAGCGGAATAGAAAGGCAGGCAGTGTGCAGCAGTTCTGGCCGGAATGCAAACGCAATTCGAATGCATTACTAGTGGCCCTAGACGCACACTCACCCTATACGCCTGGCCGTTTCTGCTGTGCAATTAATCGATAGTTAGGTAAATGTTTTTTTTCTTTTTTTGTAGTATTCGTATTTTTGGGCTGACTGTGTTTGAAGCGTTCGCGACACTCCATCCCCCGCCGTTTTGCTAGACAAAGCAGATCTCACAACTGGATTATAACCCACTGCCCGAACTCTGTTGTACACCGACCGGGCAGTGATTGTGCGATTGATGGTGTGTGTGTGC]


>consensus_6500#1 GCAGAATNGCCCCGAGGTTNTCACCCGTTGCTTCGTCCCCGGATCTATACTACTAGTGCA CTGCTAACGCGACTACCGGAAGGTTTAAACGTTAGTTTTGTACCACACCACACATATACT CTCTCGCTCTCTTTAGCATAGCCTTGCGAGAGAGGAGAGATAGTGAAAGCGGAATAGAAA GGCAGGCAGTGTGCAGCAGTTCTGGCCGGAATGCAAACGCAATTCGAATGCATTACTAGT GGCCCTAGACGCACACTCACCCTATACGCCTGGCCGTTTCTGCTGTGCAATTAATCGATA GTTAGGTAAATGTTTTTTTTCTTTTTTTGTAGTATTCGTATTTTTGGGCTGACTGTGTTT GAAGCGTTCGCGACACTCCATCCCCCGCCGTTTTGCTAGACAAAGCAGATCTCACAACTG GATTATAACCCACTGCCCGAACTCTGTTGTACACCGACCGGGCAGTGATTGTGCGATTGA TGGTGTGTGTGTGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6500#0      CTGGGGTAAAAGCAAATGTACCACAGATACCACCGTTCCACAGAAGCGTGGCTGTGCGCC 60
consensus_6500#1      ------------------------------------------------------------
                                                                                  

consensus_6500#0      GGTCAAGATGGACAAAAAGAAGGTAGTGAAAAAGACGAGCGAAAAGGCAAAAGATAGACT 120
consensus_6500#1      ------------------------------------------------------------
                                                                                  

consensus_6500#0      GAAATCCGTCTGGAGCAAGCTGGAGGGCAGGGAGTGTGGCGTTGCGACCGATCTGCTGAT 180
consensus_6500#1      ------------------------------------------------------------
                                                                                  

consensus_6500#0      CGATGGGCCGGTCAAAAGTGGCACCAAGCTGCGCTTCCACACACGAACGATCGATCTGAT 240
consensus_6500#1      ------------------------------------------------------------
                                                                                  

consensus_6500#0      CAACGATAATGCCGTTTAGTGGATCGCACGGGACAACAAACACTCACCCGTTGCTTCGTC 300
consensus_6500#1      -----------------------GCAGAATNGCCCCGAGGTTNTCACCCGTTGCTTCGTC 37
                                              *  *   * *   *     *****************

consensus_6500#0      CCCGGATCCTATACTACTAGTGCACTGCTAACGCGACTACCAGAAGATTTAAACGTTAGT 360
consensus_6500#1      CCCGGATC-TATACTACTAGTGCACTGCTAACGCGACTACCGGAAGGTTTAAACGTTAGT 96
                      ******** ******************************** **** *************

consensus_6500#0      TTTGTACCACACCACACATATACTCTCTCGCTCTCTTTAGCATAGCCCTGCGAGAGAGGA 420
consensus_6500#1      TTTGTACCACACCACACATATACTCTCTCGCTCTCTTTAGCATAGCCTTGCGAGAGAGGA 156
                      *********************************************** ************

consensus_6500#0      GAGATAGTGAAAGCGGAATAGAAAGGCAGGCAGTGTGCAGCAGTTCTGGCCGGAATGCAA 480
consensus_6500#1      GAGATAGTGAAAGCGGAATAGAAAGGCAGGCAGTGTGCAGCAGTTCTGGCCGGAATGCAA 216
                      ************************************************************

consensus_6500#0      ACGGAATTCGAATGCATTACTAGTGGCCCTAGACGCACACTCACCCTATACGCCTGGTCG 540
consensus_6500#1      ACGCAATTCGAATGCATTACTAGTGGCCCTAGACGCACACTCACCCTATACGCCTGGCCG 276
                      *** ***************************************************** **

consensus_6500#0      TTTCCGCTGTGCAATTAATCGATAGTTAGGTAAATGTTTTTTTTTGTGTTTTGTAGTATT 600
consensus_6500#1      TTTCTGCTGTGCAATTAATCGATAGTTAGGTAAATGTTTTTTTTCTTTTTTTGTAGTATT 336
                      **** ***************************************  * ************

consensus_6500#0      CGTATTTTGGG--CGAC-GTGTTTGAAGCGTTCGCAACACTCCATCCCCCGCCCATTTGC 657
consensus_6500#1      CGTATTTTTGGGCTGACTGTGTTTGAAGCGTTCGCGACACTCCATCCCCCGCCGTTTTGC 396
                      ******** **   *** ***************** *****************  *****

consensus_6500#0      TAGACAAAGCAGATCTCACAACCG-ATTATAACCCACCTGCCCGAACTCTGTTGTACACC 716
consensus_6500#1      TAGACAAAGCAGATCTCACAACTGGATTATAACCCAC-TGCCCGAACTCTGTTGTACACC 455
                      ********************** * ************ **********************

consensus_6500#0      GCACCGGGCAGTGATTGTGCGATTGATGGTGTGCGTGTGTGCGTGCGTGTGTTGACGTGC 776
consensus_6500#1      G-ACCGGGCAGTGATTGTGCGATTGATGGTGTGTGTGTGC-------------------- 494
                      * ******************************* *****                     

consensus_6500#0      TTGTATGTGTGTATTTTCCCCCAGATGTTTTTTTTATTACTTCATTTTCCCACATCCTTA 836
consensus_6500#1      ------------------------------------------------------------
                                                                                  

consensus_6500#0      AACTGTGCATCGCGTGGCGCATACTAACTCATTAGTCAACAGTCAACAGTTCTGTTCAGT 896
consensus_6500#1      ------------------------------------------------------------
                                                                                  

consensus_6500#0      GAAGATTAGAATGCGCAACGTGCCACATGCATACATGATGATACAGCTATATTTTAGTAA 956
consensus_6500#1      ------------------------------------------------------------
                                                                                  

consensus_6500#0      CGATTTCCGTTCAGTAGTAGTACATTGTGTAATAGTGTGATTTTAAAAGCAAAATGCAAA 1016
consensus_6500#1      ------------------------------------------------------------
                                                                                  

consensus_6500#0      AAAAAACGACGGAACGAGAATCATCCAACACCACTACCATGTGCGTGAGATGACGCACGT 1076
consensus_6500#1      ------------------------------------------------------------
                                                                                  

consensus_6500#0      GGAGCTACCAAAGCGCGGGAAACAGAACAGGCCAGAACAGGGGCACTGCATCCATTGGCA 1136
consensus_6500#1      ------------------------------------------------------------
                                                                                  

consensus_6500#0      GCTGGAAAAAGGGGGGAAGAGGGGGCAGCCCGTCTGATGTGAAGGAGACTAAAAAGAAAT 1196
consensus_6500#1      ------------------------------------------------------------
                                                                                  

consensus_6500#0      TATGGTTTATAATGTATTTAAAAAGACGATTCGTTTTGAGCTTAAGTAGCGTACCCTCGT 1256
consensus_6500#1      ------------------------------------------------------------
                                                                                  

consensus_6500#0      GAATACTATTGGCGCCAATTCGGGTACAATTCGGGGTGGGCGGGGTAGGTAGCAGTAGAA 1316
consensus_6500#1      ------------------------------------------------------------
                                                                                  

consensus_6500#0      GGTAGAGAGTGCGCCGAGTAGAGTCGAAAGAGTGTCCTCGAATTCGGTGATGCCTAGCAA 1376
consensus_6500#1      ------------------------------------------------------------
                                                                                  

consensus_6500#0      TAAATATAATCTTTTTACGTTCTACCAACAA 1407
consensus_6500#1      -------------------------------
                                                     




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)