These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6500#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1407 fasta sequence [CTGGGGTAAAAGCAAATGTACCACAGATACCACCGTTCCACAGAAGCGTGGCTGTGCGCCGGTCAAGATGGACAAAAAGAAGGTAGTGAAAAAGACGAGCGAAAAGGCAAAAGATAGACTGAAATCCGTCTGGAGCAAGCTGGAGGGCAGGGAGTGTGGCGTTGCGACCGATCTGCTGATCGATGGGCCGGTCAAAAGTGGCACCAAGCTGCGCTTCCACACACGAACGATCGATCTGATCAACGATAATGCCGTTTAGTGGATCGCACGGGACAACAAACACTCACCCGTTGCTTCGTCCCCGGATCCTATACTACTAGTGCACTGCTAACGCGACTACCAGAAGATTTAAACGTTAGTTTTGTACCACACCACACATATACTCTCTCGCTCTCTTTAGCATAGCCCTGCGAGAGAGGAGAGATAGTGAAAGCGGAATAGAAAGGCAGGCAGTGTGCAGCAGTTCTGGCCGGAATGCAAACGGAATTCGAATGCATTACTAGTGGCCCTAGACGCACACTCACCCTATACGCCTGGTCGTTTCCGCTGTGCAATTAATCGATAGTTAGGTAAATG--TTTTTTTTTGTGTTTTGTAGTATTCGTATTTTGGGCGACGTGTTTGAAGCGTTCGCAACACTCCATCCCCCGCCCATTTGCTAGACAAAGCAGATCTCACAACCGATTATAACCCACCTGCCCGAACTCTGTTGTACACCGCACCGGGCAGTGATTGTGCGATTGATGGTGTGCGTGTGTGCGTGCGTGTGTTGACGTGCTTGTATGTGTGTATTTT-CCCCCAGATGTTTTTTTTATTACTTCATTTTCCCACATCCTTAAACTGTGCATCGCGTGGCGCATACTAACTCATTAGTCAACAGTCAACAGTTCTGTTCAGTGAAGATTAGAATGCGCAACGTGCCACATGCATACATGATGATACAGCTATATTTTAGTAACGATTTCCGTTCAGTAGTAGTACATTGTGTAATAGTGTGATTTTAAAAGCAAAA-TGCAAAAAAAAACGACGGAACGAGAATCATCCAACACCACTACCATGTGCGTGAGATGACGCACGTGGAGCTACCAAAGCGCGGGAAACAGAACAGGCCAGAACAGGGGCACTGCATCCATTGGCAGCTGGAAAAAGGGGGGAAGAGGGGGCAGCCCGTCTGATGTGAAGGAGACTAAAAAGAAATTATGGTTTATAATGTATTTAAAAAGACGATTCGTTTTGAGCTTAAGTAGCGTACCCTCGTGAATACTATTGGCGCCAATTCGGGTACAATTCGGGGTGGGCGGGGTAGGTAGCAGTAGAAGGTAGAGAGTGCGCCGAGTAGAGTCGAAAGAGTGTCCTCGAATTCGGTGATGCCTAGCAATAAATATAATCTTTTTACGTTCTACCAACAA] [+] EMBL CNS09DQV [CTGGGGTAAAAGCAAATGTACCACAGATACCACCGTTCCACAGAAGCGTGGCTGTGCGCCGGTCAAGATGGACAAAAAGAAGGTAGTGAAAAAGACGAGCGAAAAGGCAAAAGATAGACTGAAATCCGTCTGGAGCAAGCTGGAGGGCAGGGAGTGTGGCGTTGCGACCGATCTGCTGATCGATGGGCCGGTCAAAAGTGGCACCAAGCTGCGCTTCCACACACGAACGATCGATCTGATCAACGATAATGCCGTTTAGTGGATCGCACGGGACAACAAACACTCACCCGTTGCTTCGTCCCCGGATCCTATACTACTAGTGCACTGCTAACGCGACTACCAGAAGATTTAAACGTTAGTTTTGTACCACACCACACATATACTCTCTCGCTCTCTTTAGCATAGCCCTGCGAGAGAGGAGAGATAGTGAAAGCGGAATAGAAAGGCAGGCAGTGTGCAGCAGTTCTGGCCGGAATGCAAACGGAATTCGAATGCATTACTAGTGGCCCTAGACGCACACTCACCCTATACGCCTGGTCGTTTCCGCTGTGCAATTAATCGATAGTTAGGTAAATG TTTTTTTTTGTGTTTTGTAGTATTCGTATTTTGGGCGACGTGTTTGAAGCGTTCGCAACACTCCATCCCCCGCCCATTTGCTAGACAAAGCAGATCTCACAACCGATTATAACCCACCTGCCCGAACTCTGTTGTACACCGCACCGGGCAGTGATTGTGCGATTGATGGTGTGCGTGTGTGCGTGCGTGTGTTGACGTGCTTGTATGTGTGTATTTT CCCCCAGATGTTTTTTTTATTACTTCATTTTCCCACATCCTTAAACTGTGCATCGCGTGGCGCATACTAACTCATTAGTCAACAGTCAACAGTTCTGTTCAGTGAAGATTAGAATGCGC ] [+] EMBL BX608072 [ AATGCAAACGCAATTCGAATGCATTACTAGTGGCCCTAGACGCACACTCACCCTATACGCCTGGCCGTTTCTGCTGTGCAATTAATCGATAGTTTGGTAAATGTTTTTTTTTTTGTGTTTTGTAGTATTCGTATTTTGGGCGACGTGTTTGAAGCGTTCGCGACACTCCATCCCCCGCCCGTTTGCTAGACAAAGCAGATCTCACAACGGATTATAACCCACCTGCCCGAACTCTGTTGTACACCGCACCGGGCAGTGATTGTGCGATTGATGGTGT GTGTGTGCGTGCGTGTGTTGACGTGCTTGTATGTGTGTATTTT CCCCCAGATG TTTTTTATTACCTTATTTTCCCACATCCTTAAACTGTGCATCGCGTAGCGCATACTAACTCATTAGTCAACAGACAATAGTTCTGTTCAGTGAAGATTAGAATGCGCAACGTGCCACATGCAGACATGATGATACAGCTATATTTTAGTAACGATTTCCGTTCAGTAGTAGTACATTGTGAAATAGTCTGATTTTAAAAGCAAAA ] [-] EMBL CNS09DQW [ TAGTGGCCCTAGACGCACACTCACCCTATACGCCTGGTCGTTTCCGCTGTGCAATTAATCGATAGTTAGGTAAATG TTTTTTTTTGTGTTTTGTAGTATTCGTATTTTGGGCGACGTGTTTGAAGCGTTCGCAAAACTCCATCCCCCGCCCATTTGCTAGACAAAGCAGATCTCACAACCGATTATAACCCACCTGCCCGAACTCTGTTGTACACCGCACCGGGCAGTGATTGTGCGATTGATGGTGTGCGTGTGTGCGTGCGTGTGTTGACGTGCTTGTATGTGTGTATTTT CCCCCAGATGTTTTTTTTATTACTTCATTTTCCCACATCCTTAAACTGTGCATCGCGTGGCGCATACTAACTCATTAGTCAACAGTCAACAGTTCTGTTCAGTGAAGATTAGAATGCGCAACGTGCCACATGCATACATGATGATACAGCTATATTTTAGTAACGATTTCCGTTCAGTAGTAGTACATTGTGTAATAGTGTGATTTTAAAAGCAAAA TGCAAAAAAAAACGACGGAACGAGAATCATCCAACACCACTACCATGTGCGTGAGATGACGCACGTGGAGCTACCAAAGCGCGGGAAACAGAACAGGCCAGAACAGGGGCACTGCATCCATTGGCAGCTGGAAAAAGGGGGGAAGAGGGGGCAGCCCGTCTGATGTGAAGGAGACTAAAAAGAAATTATGGTTTATAATGTATTTAAAAAGACGATTCGTTTTGAGCTTAAGTAGCGTACCCTCGTGAATACTATTGGCGCCAATTCGGGTACAATTCGGGGTGGGCGGGGTAGGTAGCAGTAGAAGGTAGAGAGTGCGCCGAGTAGAGTCGAAAGAGTGTCCTCGAATTCGGTGATGCCTAGCAATAAATATAATCTTTTTACGTTCTACCAACAA] [-] EMBL CNS08DNK [ ACCCTATACGCCTGGTCGTTTCCGCTGTGCAATTAATCGATAGTTAGGTAAATG TTTTTTTTTGTGTTTTGTAGTATTCGTATTTTGGGCGACGTGTTTGAAGCGTTCGCAACACTCCATCCCCCGCCCATTTGCTAGACAAAGCAGATCTCACAACCGATTATAACCCACCTGCCCGGACTAAGTTGTACACCGCCCCGGGCGGTGATTGTGCGATTGATGGTGTGCGTGTGTGCGTGCGTGTGTTGGGAAACTTGTATGTGTGTATTTTCCCCCCAGATGTTTTTTTTATTACTTCATTTTCCCACATCCTTAAACTGTGCATCGCGTAGCGCATACTAACTCATTAGTCAACAGTCAACAGTTCTGTTCAGTGAAGATTAGAATGCGCAACGTGCCACATGCATACATGATGATACAGCTATATTTTAGTAACGATTTCCGTTCAGTAGTAGTACATTGTGTAATAGTGTGATTTTAAAAGCAAAAGTGCAAAAAAAAACGACGGAACGAGAATCATCCAACACCACTACCATGTGCGTGAGATAACGCACGTGGAGCTACCAAAGCGCGGGAAACAGAACAGGCCAGAACAGGGGCACTGCATCCATTGGCAGCTGGAAAAAGGGGGGAAGAGGGGGCAGCCCGTCTGATGTGAAGGAGACTAAAAAGAAATTATGGTTTATAATGTATTTAAAAAGACGATTCGTTTTGAGCTTAAGTAGCGTACCCTCGTGAATACTATTGGCGCCAATTCGGGTACAATTCGGGGTGGGCGGGGTAGGTAGCAGTAGAAGGTAGAGAGTGCGCCGAGTAGAGTCGAAAGAGTGTCCTCGAATTCGGTGATGCCTAGCAATAAATATA ] consensusID : consensus_6500#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 494 fasta sequence [GCAGAATNGCCCCGAGGTTNTCACCCGTTGCTTCGTCCCCGGATCTATACTACTAGTGCACTGCTAACGCGACTACCGGAAGGTTTAAACGTTAGTTTTGTACCACACCACACATATACTCTCTCGCTCTCTTTAGCATAGCCTTGCGAGAGAGGAGAGATAGTGAAAGCGGAATAGAAAGGCAGGCAGTGTGCAGCAGTTCTGGCCGGAATGCAAACGCAATTCGAATGCATTACTAGTGGCCCTAGACGCACACTCACCCTATACGCCTGGCCGTTTCTGCTGTGCAATTAATCGATAGTTAGGTAAATGTTTTTTTTCTTTTTTTGTAGTATTCGTATTTTTGGGCTGACTGTGTTTGAAGCGTTCGCGACACTCCATCCCCCGCCGTTTTGCTAGACAAAGCAGATCTCACAACTGGATTATAACCCACTGCCCGAACTCTGTTGTACACCGACCGGGCAGTGATTGTGCGATTGATGGTGTGTGTGTGC] [+] EMBL AL931516 [GCAGAATNGCCCCGAGGTTNTCACCCGTTGCTTCGTCCCCGGATCTATACTACTAGTGCACTGCTAACGCGACTACCGGAAGGTTTAAACGTTAGTTTTGTACCACACCACACATATACTCTCTCGCTCTCTTTAGCATAGCCTTGCGAGAGAGGAGAGATAGTGAAAGCGGAATAGAAAGGCAGGCAGTGTGCAGCAGTTCTGGCCGGAATGCAAACGCAATTCGAATGCATTACTAGTGGCCCTAGACGCACACTCACCCTATACGCCTGGCCGTTTCTGCTGTGCAATTAATCGATAGTTAGGTAAATGTTTTTTTTCTTTTTTTGTAGTATTCGTATTTTTGGGCTGACTGTGTTTGAAGCGTTCGCGACACTCCATCCCCCGCCGTTTTGCTAGACAAAGCAGATCTCACAACTGGATTATAACCCACTGCCCGAACTCTGTTGTACACCGACCGGGCAGTGATTGTGCGATTGATGGTGTGTGTGTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6500#0 CTGGGGTAAAAGCAAATGTACCACAGATACCACCGTTCCACAGAAGCGTGGCTGTGCGCC 60 consensus_6500#1 ------------------------------------------------------------ consensus_6500#0 GGTCAAGATGGACAAAAAGAAGGTAGTGAAAAAGACGAGCGAAAAGGCAAAAGATAGACT 120 consensus_6500#1 ------------------------------------------------------------ consensus_6500#0 GAAATCCGTCTGGAGCAAGCTGGAGGGCAGGGAGTGTGGCGTTGCGACCGATCTGCTGAT 180 consensus_6500#1 ------------------------------------------------------------ consensus_6500#0 CGATGGGCCGGTCAAAAGTGGCACCAAGCTGCGCTTCCACACACGAACGATCGATCTGAT 240 consensus_6500#1 ------------------------------------------------------------ consensus_6500#0 CAACGATAATGCCGTTTAGTGGATCGCACGGGACAACAAACACTCACCCGTTGCTTCGTC 300 consensus_6500#1 -----------------------GCAGAATNGCCCCGAGGTTNTCACCCGTTGCTTCGTC 37 * * * * * ***************** consensus_6500#0 CCCGGATCCTATACTACTAGTGCACTGCTAACGCGACTACCAGAAGATTTAAACGTTAGT 360 consensus_6500#1 CCCGGATC-TATACTACTAGTGCACTGCTAACGCGACTACCGGAAGGTTTAAACGTTAGT 96 ******** ******************************** **** ************* consensus_6500#0 TTTGTACCACACCACACATATACTCTCTCGCTCTCTTTAGCATAGCCCTGCGAGAGAGGA 420 consensus_6500#1 TTTGTACCACACCACACATATACTCTCTCGCTCTCTTTAGCATAGCCTTGCGAGAGAGGA 156 *********************************************** ************ consensus_6500#0 GAGATAGTGAAAGCGGAATAGAAAGGCAGGCAGTGTGCAGCAGTTCTGGCCGGAATGCAA 480 consensus_6500#1 GAGATAGTGAAAGCGGAATAGAAAGGCAGGCAGTGTGCAGCAGTTCTGGCCGGAATGCAA 216 ************************************************************ consensus_6500#0 ACGGAATTCGAATGCATTACTAGTGGCCCTAGACGCACACTCACCCTATACGCCTGGTCG 540 consensus_6500#1 ACGCAATTCGAATGCATTACTAGTGGCCCTAGACGCACACTCACCCTATACGCCTGGCCG 276 *** ***************************************************** ** consensus_6500#0 TTTCCGCTGTGCAATTAATCGATAGTTAGGTAAATGTTTTTTTTTGTGTTTTGTAGTATT 600 consensus_6500#1 TTTCTGCTGTGCAATTAATCGATAGTTAGGTAAATGTTTTTTTTCTTTTTTTGTAGTATT 336 **** *************************************** * ************ consensus_6500#0 CGTATTTTGGG--CGAC-GTGTTTGAAGCGTTCGCAACACTCCATCCCCCGCCCATTTGC 657 consensus_6500#1 CGTATTTTTGGGCTGACTGTGTTTGAAGCGTTCGCGACACTCCATCCCCCGCCGTTTTGC 396 ******** ** *** ***************** ***************** ***** consensus_6500#0 TAGACAAAGCAGATCTCACAACCG-ATTATAACCCACCTGCCCGAACTCTGTTGTACACC 716 consensus_6500#1 TAGACAAAGCAGATCTCACAACTGGATTATAACCCAC-TGCCCGAACTCTGTTGTACACC 455 ********************** * ************ ********************** consensus_6500#0 GCACCGGGCAGTGATTGTGCGATTGATGGTGTGCGTGTGTGCGTGCGTGTGTTGACGTGC 776 consensus_6500#1 G-ACCGGGCAGTGATTGTGCGATTGATGGTGTGTGTGTGC-------------------- 494 * ******************************* ***** consensus_6500#0 TTGTATGTGTGTATTTTCCCCCAGATGTTTTTTTTATTACTTCATTTTCCCACATCCTTA 836 consensus_6500#1 ------------------------------------------------------------ consensus_6500#0 AACTGTGCATCGCGTGGCGCATACTAACTCATTAGTCAACAGTCAACAGTTCTGTTCAGT 896 consensus_6500#1 ------------------------------------------------------------ consensus_6500#0 GAAGATTAGAATGCGCAACGTGCCACATGCATACATGATGATACAGCTATATTTTAGTAA 956 consensus_6500#1 ------------------------------------------------------------ consensus_6500#0 CGATTTCCGTTCAGTAGTAGTACATTGTGTAATAGTGTGATTTTAAAAGCAAAATGCAAA 1016 consensus_6500#1 ------------------------------------------------------------ consensus_6500#0 AAAAAACGACGGAACGAGAATCATCCAACACCACTACCATGTGCGTGAGATGACGCACGT 1076 consensus_6500#1 ------------------------------------------------------------ consensus_6500#0 GGAGCTACCAAAGCGCGGGAAACAGAACAGGCCAGAACAGGGGCACTGCATCCATTGGCA 1136 consensus_6500#1 ------------------------------------------------------------ consensus_6500#0 GCTGGAAAAAGGGGGGAAGAGGGGGCAGCCCGTCTGATGTGAAGGAGACTAAAAAGAAAT 1196 consensus_6500#1 ------------------------------------------------------------ consensus_6500#0 TATGGTTTATAATGTATTTAAAAAGACGATTCGTTTTGAGCTTAAGTAGCGTACCCTCGT 1256 consensus_6500#1 ------------------------------------------------------------ consensus_6500#0 GAATACTATTGGCGCCAATTCGGGTACAATTCGGGGTGGGCGGGGTAGGTAGCAGTAGAA 1316 consensus_6500#1 ------------------------------------------------------------ consensus_6500#0 GGTAGAGAGTGCGCCGAGTAGAGTCGAAAGAGTGTCCTCGAATTCGGTGATGCCTAGCAA 1376 consensus_6500#1 ------------------------------------------------------------ consensus_6500#0 TAAATATAATCTTTTTACGTTCTACCAACAA 1407 consensus_6500#1 ------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||