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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6503#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 805 fasta sequence
[TTGAGATATAAACAGTGCGCACGGTGCGCGATCGTGTGATCGAGAGCCAGAAAATAG-CAAGCTAGCGCGAAGGAACGAATGGGTTAAAGCAAAGTAAAGTGCGATATAAGGCAGCAAGGGCAAACATCCTTAACACAATGGCAATGAAAGGCGACGAGTGCGTGATAGCGTACGGAGACGAATTGTGCACGGTAGGGCTAGGTATGCATGAGGCTGCGTGATTGTGACACTACTGTGTGTGTTCGTACGGGGAAGTTTGGGATGTTTGGGATGCGAGATTATGATGATACTATACTGCCTACGTATGAATGGGAACGAGCAAACGGAATTAACGCTGAGTAAAAGAGAGAGAGAGAGAGAGAACGTATGTGTGGGTGTGTGTATGTATGTGTGAGAGAGAGATAGAGAGAGAAAGAGAAGGAGCGATTGCGGGGAATTACGTATGAATGTGCTAGGACAAGGCAACGAAAATAGACAAGAAAATATCGTTCCGCCAACACGTGTGCGGAGGAGACTAAAGTATATATAATATAGAGCAAAATGTGAGGAAAATTAAGCAAGAGTTTAGAGAAAGCAACAACAGCAACAACAACAACAAAAAAAAAACAACAAAATCACACAGATAGCTTGACCGAGCAAACCGCTTCGTCGAGTAAGATTAGGTCGAAGTAAGAGAGTGCATGTGAATGAAGAGAAAGCATTATAAGAGCGCGCCCTTCCGTTAGTGTGTGTGCATTTAACGAGTGAATGACTCCCGATGATGATTCCTCTTGTTTAATAAATCTACTGTTTTTACAATGTGAAA]
[+] EMBL CNS09A3Y [TTGAGATATAAACAGTGCGCACGGTGCGCGATCGTGTGATCGAGAGCCAGAAAATAG CAAGCTAGCGCGAAGGAACGAATGGGTTAAAGCAAAGTAAAGTGCGATATAAGGCAGCAAGGGCAAACATCCTTAACACAATGGCAATGAAAGGCGACGAGTGCGTGATAGCGTACGGAGACGAATTGTGCACGGTAGGGCTAGGTATGCATGAGGCTGCGTGATTGTGACACTACTGTGTGTGTTCGTACGGGGAAGTTTGGGATGTTTGGGATGCGAGATTATGATGATACTATACTGCCTACGTATGAATGGGAACGAGCAAACGGAATTAACGCTGAGTAAAAGAGAGAGAGAGAGAGAGAACGTATGTGTGGGTGTGTGTATGTATGTGTGAGAGAGAGATAGAGAGAGAAAGAGAAGGAGCGATTGCGGGGAATTACGTATGAATGTGCTAGGACAAGGCAACGAAAATAGACAAGAAAATATCGTTCCGCCAACACGTGTGCGGAGGAGACTAAAGTATATATAATATAGAGCAAAATGTGAGGAAAATTAAGCAAGAGTTTAGA ]
[-] EMBL CNS09A3Z [ CGCGA CGTGTGATCGAGAGCCAGAAAATAGCCAAG TAGCGCGAAGGAACGAATGGGTTAAAGCAAAGTAAAGTGCGATATAAGGCAGCAAGGGCAAACATCCTTAACACAATGGCAATGAAAGGCGACGAGTGCGTGATAGCGTACGGAGACGAATTGTGCCCGGTAGGGCTAGGTATGCATGAGGCTGCGTGATTGTGACACTACTGTGTGTGTTCGTACGGGGAAGTTTGGGATGTTTGGGATGCGAGATTATGATGATACTATACTGCCTACGTATGAATGGGAACGAGCAAACGGAATTAACGCTGAGTAAAAGAGAGAGAGAGAGAGAGAACGTATGTGTGGGTGTGTGTATGTATGTGTGAGAGAGAGATAGAGAGAGAAAGAGAAGGAGCGATTGC GGGAATTACGTATGAATGTGCTAGGACAAGGCAACGAAAATAGACAAGAAAATATCGTTCCGCCAACACGTGTGCGGAGGAGACTAAAGTATATATAATATAGAGCAAAATGTGAGGAAAATTAAGCAAGAGTTTAGAGAAAGCAACAACAGCAACAACAACAACAAAAAAAAAACAACAAAATCACACAGATAGCTTGACCGAGCAAACCGCTTCGTCGAGTAAGATTAGGTCGAAGTAAGAGAGTGCATGTGAATGAAGAGAAAGCATTATAAGAGCGCGCCCTTCCGTTAGTGTGTGTGCATTTAACGAGTGAATGACTCCCGATGATGATTCCTCTTGTTTAATAAATCTACTGTTTTTACAATGTGAAA]
consensusID : consensus_6503#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 801 fasta sequence
[CAAGAATCGCCCGAGGGAAATCATGGCGGTAAAGAGTATCTGATAAACTGTGTTCTGTTTTTATAAGCTTTTTTTTTTAACAAGAAAACAAAAAAATATGTAAAATAGTTTTTTTTAGTAAAAAAAAAGAAGAAAGATAAACTGATATTGTTGAAACACGTGCATGATTGAGATATAAACAGTGCTGCACTGCTGTGCTGCTGCTGACGTGTGATCTGAGAGCCAGAATATATGCAATGCTAGCGCGAATTGAACGAATGTGGTTAAAGCAAAGTAAAGTGCGATATAATGTGCAGCAATGGGCAAACATCCTTAACACAATGGCAATGAAATGGCGACGAGTGCGTGATAGCTGTACTGGAGACGAATTGTTGCACTGGTAGGGCTAGTGTATTGGATGAGTGCTGCTGTGATTTGTTGACACTACTGTGTTGTTGTTCTGTACGGGGAAGTTTTGGGATTGTTTTGGGATTGCGAGATTATTGATGATACTATACTTGCCTACGTATGAATTGGGAACTGAGCAAACTGGAATTAACTGCTGAGTAAAAGAGAGAGAGAGAGAGAGAACGTATGTGTGGGTGTGTGTATGTATTGTTGGANCAAGANGCAAGCAGAAGACGCATCAGCACGCCACGAGCACACACGCANCACACGTGGACGCCGCATCTTGCTGGTGACATTTACCGGTTATCCANACTTGTTTGCCTCAGTGGACCCACAGTGGCCACACCGAANACANATTAGGACAAATGCAGCACACATATCCGGTATCCCTGGCACCAAANNCAACCGTTGCTT]
[+] EMBL AL931413 [CAAGAATCGCCCGAGGGAAATCATGGCGGTAAAGAGTATCTGATAAACTGTGTTCTGTTTTTATAAGCTTTTTTTTTTAACAAGAAAACAAAAAAATATGTAAAATAGTTTTTTTTAGTAAAAAAAAAGAAGAAAGATAAACTGATATTGTTGAAACACGTGCATGATTGAGATATAAACAGTGCTGCACTGCTGTGCTGCTGCTGACGTGTGATCTGAGAGCCAGAATATATGCAATGCTAGCGCGAATTGAACGAATGTGGTTAAAGCAAAGTAAAGTGCGATATAATGTGCAGCAATGGGCAAACATCCTTAACACAATGGCAATGAAATGGCGACGAGTGCGTGATAGCTGTACTGGAGACGAATTGTTGCACTGGTAGGGCTAGTGTATTGGATGAGTGCTGCTGTGATTTGTTGACACTACTGTGTTGTTGTTCTGTACGGGGAAGTTTTGGGATTGTTTTGGGATTGCGAGATTATTGATGATACTATACTTGCCTACGTATGAATTGGGAACTGAGCAAACTGGAATTAACTGCTGAGTAAAAGAGAGAGAGAGAGAGAGAACGTATGTGTGGGTGTGTGTATGTATTGTTGGANCAAGANGCAAGCAGAAGACGCATCAGCACGCCACGAGCACACACGCANCACACGTGGACGCCGCATCTTGCTGGTGACATTTACCGGTTATCCANACTTGTTTGCCTCAGTGGACCCACAGTGGCCACACCGAANACANATTAGGACAAATGCAGCACACATATCCGGTATCCCTGGCACCAAANNCAACCGTTGCTT]
consensusID : consensus_6503#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 461 fasta sequence
[GGCAAGAATTCGGCACGATGGAGCGATATAAGGCAGCAAGGGGCAAACATCCTTAACACAATGGCAATGAAAGGCGACGAGTGCGTGATAGCGTACGGAGCCGAATTGTGCACGGTAGGGCTAGGTATGCATGAGGCTGCGTGATTGTGACACTACTGTGTGTGTTCGTACGGGGAAGTTTGGGATGTTTGGGATGCGAGATTATGATGATACTATACTGCCTACGTATGAATGGGAACGAGCAAACGGAATTAACGCTGAGTAAAAGAGAGAGAGAGAGAGAACGTATGTGTGGGTGTGTGTATGTATGTGTGAGAGAGAGATAGAGAGAGAAAGAGAAGGAGCGATTGCGGGAATTACGTATGANATGTGCTAGGACAAGGCAACGAAAATAGACNAGGAAAACTATCGTTCCGGCAACAACGTGATGCGGAGGAGACTAAAGTCATAGTATGNATAGT]
[+] EMBL BX468163 [GGCAAGAATTCGGCACGATGGAGCGATATAAGGCAGCAAGGGGCAAACATCCTTAACACAATGGCAATGAAAGGCGACGAGTGCGTGATAGCGTACGGAGCCGAATTGTGCACGGTAGGGCTAGGTATGCATGAGGCTGCGTGATTGTGACACTACTGTGTGTGTTCGTACGGGGAAGTTTGGGATGTTTGGGATGCGAGATTATGATGATACTATACTGCCTACGTATGAATGGGAACGAGCAAACGGAATTAACGCTGAGTAAAAGAGAGAGAGAGAGAGAACGTATGTGTGGGTGTGTGTATGTATGTGTGAGAGAGAGATAGAGAGAGAAAGAGAAGGAGCGATTGCGGGAATTACGTATGANATGTGCTAGGACAAGGCAACGAAAATAGACNAGGAAAACTATCGTTCCGGCAACAACGTGATGCGGAGGAGACTAAAGTCATAGTATGNATAGT]
consensusID : consensus_6503#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 113 fasta sequence
[CCGCCCACGCGTCCGAAGAGCGCGCCCTTCCGTTAGTGTGTGTGCATTTAACGAGTGAATGACTCCCGATGATGATTCCTCTTGTTTAATAAATCTACTGGACTGACAATGTG]
[+] EMBL BM578483 [CCGCCCACGCGTCCGAAGAGCGCGCCCTTCCGTTAGTGTGTGTGCATTTAACGAGTGAATGACTCCCGATGATGATTCCTCTTGTTTAATAAATCTACTGGACTGACAATGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6503#0 TTGAGATATAAACAGTGCGCACGGTGCGCGATCGTGTGATCGAGAGCCAGAAAATAGCAA 60
consensus_6503#3 ------------------------------------------------------------
consensus_6503#1 ------------------------------------------------------------
consensus_6503#2 ------------------------------------------------------------
consensus_6503#0 GCTAGCGCGAAGGAACGAATGGGTTAAAGCAAAGTAAAGTGCGATATAAGGCAGCAAGGG 120
consensus_6503#3 ------------------------------------------------------------
consensus_6503#1 ------------------------------------------------------------
consensus_6503#2 ------------------------------------------------------------
consensus_6503#0 CAAACATCCTTAACACAATGGCAATGAAAGGCGACGAGTGCGTGATAGCGTACGGAGACG 180
consensus_6503#3 ------------------------------------------------------------
consensus_6503#1 ------------------------------------------------------------
consensus_6503#2 ------------------------------------------------------------
consensus_6503#0 AATTGTGCACGGTAGGGCTAGGTATGCATGAGGCTGCGTGATTGTGACACTACTGTGTGT 240
consensus_6503#3 ------------------------------------------------------------
consensus_6503#1 ------------------------------------------------------------
consensus_6503#2 ------------------------------------------------------------
consensus_6503#0 GTTCGTACGGGGAAGTTTGGGATGTTTGGGATGCGAGATTATGATGATACTATACTGCCT 300
consensus_6503#3 ------------------------------------------------------------
consensus_6503#1 ------------------------------------------------------------
consensus_6503#2 ------------------------------------------------------------
consensus_6503#0 ACGTATGAATGGGAACGAGCAAACGGAATTAACGCTGAGTAAAAGAGAGAGAGAGAGAGA 360
consensus_6503#3 ------------------------------------------------------------
consensus_6503#1 ----------------------------------------------------------CA 2
consensus_6503#2 ------------------------------------------------------------
consensus_6503#0 GAACGTATGTGTGGGTGTGTGTATGTATGTGTGAGAGAGAGATAGAGAGAGAAAGAGAAG 420
consensus_6503#3 ------------------------------------------------------------
consensus_6503#1 AGAATCGCCCGAGGGAAATCATGGCGGTAAAGAGTATCTGATAAACTGTGTTCTGTTTTT 62
consensus_6503#2 ------------------------------------------------------------
consensus_6503#0 GAGCGATTGCGGGGAATTACGTATGAATGTGCTAGGACAAGGCAACGAAAATAGACAAGA 480
consensus_6503#3 ------------------------------------------------------------
consensus_6503#1 ATAAGCTTTTTTTTTTAACAAGAAAACAAAAAAATATGTAAAATAGTTTTTTTTAGTAAA 122
consensus_6503#2 ------------------------------------------------------------
consensus_6503#0 AAATATCGTTCCGCCAACACGTGTGCGGAGGAGACTAAAGTATATATAATATAGAGCAAA 540
consensus_6503#3 ------------------------------------------------------------
consensus_6503#1 AAAAAAGAAGAAAGATAAACTGATATTGTTGAAACACGTGCATGATTGAGATATAAACAG 182
consensus_6503#2 ------------------------------------------------------------
consensus_6503#0 ATGTGAGGAAAATTAAGCAAGAGTTTAGAGAAAGCAACAACAGCAACAACAACAACAAAA 600
consensus_6503#3 ------------------------------------------------------------
consensus_6503#1 TGCTGCACTGCTGTGCTGCTGCTGACGTGTGATCTGAGAGCCAGAATATATGCAATGCTA 242
consensus_6503#2 ------------------------------------------------------------
consensus_6503#0 AAAAAACAACAAAATCACACAGATAGCTTGACCGAGCAAACCGCTTCGTCGAGTAAGATT 660
consensus_6503#3 ------------------------------------------------------------
consensus_6503#1 GCGCGAATTGAACGAATGTGGTTAAAGCAAAGTAAAGTGCGATATAATGTGCAGCAATGG 302
consensus_6503#2 --------------GGCAAGAATTCGGCACGATGGAG--CGATATAAGG--CAGCAAGGG 42
consensus_6503#0 AGGTCGAAGTAAGAGAGTGCATGTGAATGAAGAGAAAGCATTATAAGAGCGCGCCCTTCC 720
consensus_6503#3 -----------------------------CCGCCCACGCGTCCGAAGAGCGCGCCCTTCC 31
consensus_6503#1 GCAAACATCCTTAACACAATGGCAATGAAATGGCGACGAGTGCGTGATAGCTGTACTGGA 362
consensus_6503#2 GCAAACATCCTTAACACAATGGCAATGAAA-GGCGACGAGTGCGTGATAGC-GTAC-GGA 99
* * * * * *
consensus_6503#0 GTTAGTGTGTGTGCATTTAACGAGTGAATGACTCCCGATGATGATTCCTCTTGTTTAATA 780
consensus_6503#3 GTTAGTGTGTGTGCATTTAACGAGTGAATGACTCCCGATGATGATTCCTCTTGTTTAATA 91
consensus_6503#1 GACGAATTGT-TGCACTGGTAGGGCTAGTGTATT-GGATGAGTGCTGCTGTGATTTGTTG 420
consensus_6503#2 GCCGAATTGT--GCAC-GGTAGGGCTAG-GTAT--GCATGAG-GCTGC-GTGATTG--TG 149
* *** *** * * * * * **** * * * ** *
consensus_6503#0 AATCTACTGTTTTTACAATGTGAAA----------------------------------- 805
consensus_6503#3 AATCTACTGGACTGACAATGTG-------------------------------------- 113
consensus_6503#1 ACACTACTGTGTTGTTGTTCTGTACGGGGAAGTTTTGGGATTGTTTTGGGATTGCGAGAT 480
consensus_6503#2 ACACTACTGTGT--GTGTTC-GTACGGGGAAGTTT-GGGATG--TTTGGGAT-GCGAGAT 202
* ****** * *
consensus_6503#0 ------------------------------------------------------------
consensus_6503#3 ------------------------------------------------------------
consensus_6503#1 TATTGATGATACTATACTTGCCTACGTATGAATTGGGAACTGAGCAAACTGGAATTAACT 540
consensus_6503#2 TAT-GATGATACTATACT-GCCTACGTATGAAT-GGGAAC-GAGCAAAC-GGAATTAAC- 256
consensus_6503#0 ------------------------------------------------------------
consensus_6503#3 ------------------------------------------------------------
consensus_6503#1 GCTGAGTAAAAGAGAGAGAGAGAGAGAGAACGTATGTGTGGGTGTGTGTATGTAT-TGTT 599
consensus_6503#2 GCTGAGTAAAAGAGAGAGAGAGAGAG--AACGTATGTGTGGGTGTGTGTATGTATGTGTG 314
consensus_6503#0 ------------------------------------------------------------
consensus_6503#3 ------------------------------------------------------------
consensus_6503#1 GGANCAAGANGCAAGCAGAAGACGCATCAGCACGCCACGAGCACACACGCANCACACGTG 659
consensus_6503#2 AGAGAGAGATAGAGAGAGAAAGAGAAGGAGCG-ATTGCGGGAAT-TACGTATGANATGTG 372
consensus_6503#0 ------------------------------------------------------------
consensus_6503#3 ------------------------------------------------------------
consensus_6503#1 GACGCCGCATCTTGCTGGTGACATTTACCGGTTATCCANACTTGTTTGCCTCAGTGGACC 719
consensus_6503#2 ---CTAGGACAAGGCAACGAAAATAGACNAGGAAAACTATCGTTCCGGCAACAACGTGAT 429
consensus_6503#0 ------------------------------------------------------------
consensus_6503#3 ------------------------------------------------------------
consensus_6503#1 CACAGTGGCCACACCGAANACANATTAGGACAAATGCAGCACACATATCCGGTATCCCTG 779
consensus_6503#2 -GCGGAGG--AGACTAAAGTCATAGTATGNATAGT------------------------- 461
consensus_6503#0 ----------------------
consensus_6503#3 ----------------------
consensus_6503#1 GCACCAAANNCAACCGTTGCTT 801
consensus_6503#2 ----------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||