These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6503#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 805 fasta sequence [TTGAGATATAAACAGTGCGCACGGTGCGCGATCGTGTGATCGAGAGCCAGAAAATAG-CAAGCTAGCGCGAAGGAACGAATGGGTTAAAGCAAAGTAAAGTGCGATATAAGGCAGCAAGGGCAAACATCCTTAACACAATGGCAATGAAAGGCGACGAGTGCGTGATAGCGTACGGAGACGAATTGTGCACGGTAGGGCTAGGTATGCATGAGGCTGCGTGATTGTGACACTACTGTGTGTGTTCGTACGGGGAAGTTTGGGATGTTTGGGATGCGAGATTATGATGATACTATACTGCCTACGTATGAATGGGAACGAGCAAACGGAATTAACGCTGAGTAAAAGAGAGAGAGAGAGAGAGAACGTATGTGTGGGTGTGTGTATGTATGTGTGAGAGAGAGATAGAGAGAGAAAGAGAAGGAGCGATTGCGGGGAATTACGTATGAATGTGCTAGGACAAGGCAACGAAAATAGACAAGAAAATATCGTTCCGCCAACACGTGTGCGGAGGAGACTAAAGTATATATAATATAGAGCAAAATGTGAGGAAAATTAAGCAAGAGTTTAGAGAAAGCAACAACAGCAACAACAACAACAAAAAAAAAACAACAAAATCACACAGATAGCTTGACCGAGCAAACCGCTTCGTCGAGTAAGATTAGGTCGAAGTAAGAGAGTGCATGTGAATGAAGAGAAAGCATTATAAGAGCGCGCCCTTCCGTTAGTGTGTGTGCATTTAACGAGTGAATGACTCCCGATGATGATTCCTCTTGTTTAATAAATCTACTGTTTTTACAATGTGAAA] [+] EMBL CNS09A3Y [TTGAGATATAAACAGTGCGCACGGTGCGCGATCGTGTGATCGAGAGCCAGAAAATAG CAAGCTAGCGCGAAGGAACGAATGGGTTAAAGCAAAGTAAAGTGCGATATAAGGCAGCAAGGGCAAACATCCTTAACACAATGGCAATGAAAGGCGACGAGTGCGTGATAGCGTACGGAGACGAATTGTGCACGGTAGGGCTAGGTATGCATGAGGCTGCGTGATTGTGACACTACTGTGTGTGTTCGTACGGGGAAGTTTGGGATGTTTGGGATGCGAGATTATGATGATACTATACTGCCTACGTATGAATGGGAACGAGCAAACGGAATTAACGCTGAGTAAAAGAGAGAGAGAGAGAGAGAACGTATGTGTGGGTGTGTGTATGTATGTGTGAGAGAGAGATAGAGAGAGAAAGAGAAGGAGCGATTGCGGGGAATTACGTATGAATGTGCTAGGACAAGGCAACGAAAATAGACAAGAAAATATCGTTCCGCCAACACGTGTGCGGAGGAGACTAAAGTATATATAATATAGAGCAAAATGTGAGGAAAATTAAGCAAGAGTTTAGA ] [-] EMBL CNS09A3Z [ CGCGA CGTGTGATCGAGAGCCAGAAAATAGCCAAG TAGCGCGAAGGAACGAATGGGTTAAAGCAAAGTAAAGTGCGATATAAGGCAGCAAGGGCAAACATCCTTAACACAATGGCAATGAAAGGCGACGAGTGCGTGATAGCGTACGGAGACGAATTGTGCCCGGTAGGGCTAGGTATGCATGAGGCTGCGTGATTGTGACACTACTGTGTGTGTTCGTACGGGGAAGTTTGGGATGTTTGGGATGCGAGATTATGATGATACTATACTGCCTACGTATGAATGGGAACGAGCAAACGGAATTAACGCTGAGTAAAAGAGAGAGAGAGAGAGAGAACGTATGTGTGGGTGTGTGTATGTATGTGTGAGAGAGAGATAGAGAGAGAAAGAGAAGGAGCGATTGC GGGAATTACGTATGAATGTGCTAGGACAAGGCAACGAAAATAGACAAGAAAATATCGTTCCGCCAACACGTGTGCGGAGGAGACTAAAGTATATATAATATAGAGCAAAATGTGAGGAAAATTAAGCAAGAGTTTAGAGAAAGCAACAACAGCAACAACAACAACAAAAAAAAAACAACAAAATCACACAGATAGCTTGACCGAGCAAACCGCTTCGTCGAGTAAGATTAGGTCGAAGTAAGAGAGTGCATGTGAATGAAGAGAAAGCATTATAAGAGCGCGCCCTTCCGTTAGTGTGTGTGCATTTAACGAGTGAATGACTCCCGATGATGATTCCTCTTGTTTAATAAATCTACTGTTTTTACAATGTGAAA] consensusID : consensus_6503#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 801 fasta sequence [CAAGAATCGCCCGAGGGAAATCATGGCGGTAAAGAGTATCTGATAAACTGTGTTCTGTTTTTATAAGCTTTTTTTTTTAACAAGAAAACAAAAAAATATGTAAAATAGTTTTTTTTAGTAAAAAAAAAGAAGAAAGATAAACTGATATTGTTGAAACACGTGCATGATTGAGATATAAACAGTGCTGCACTGCTGTGCTGCTGCTGACGTGTGATCTGAGAGCCAGAATATATGCAATGCTAGCGCGAATTGAACGAATGTGGTTAAAGCAAAGTAAAGTGCGATATAATGTGCAGCAATGGGCAAACATCCTTAACACAATGGCAATGAAATGGCGACGAGTGCGTGATAGCTGTACTGGAGACGAATTGTTGCACTGGTAGGGCTAGTGTATTGGATGAGTGCTGCTGTGATTTGTTGACACTACTGTGTTGTTGTTCTGTACGGGGAAGTTTTGGGATTGTTTTGGGATTGCGAGATTATTGATGATACTATACTTGCCTACGTATGAATTGGGAACTGAGCAAACTGGAATTAACTGCTGAGTAAAAGAGAGAGAGAGAGAGAGAACGTATGTGTGGGTGTGTGTATGTATTGTTGGANCAAGANGCAAGCAGAAGACGCATCAGCACGCCACGAGCACACACGCANCACACGTGGACGCCGCATCTTGCTGGTGACATTTACCGGTTATCCANACTTGTTTGCCTCAGTGGACCCACAGTGGCCACACCGAANACANATTAGGACAAATGCAGCACACATATCCGGTATCCCTGGCACCAAANNCAACCGTTGCTT] [+] EMBL AL931413 [CAAGAATCGCCCGAGGGAAATCATGGCGGTAAAGAGTATCTGATAAACTGTGTTCTGTTTTTATAAGCTTTTTTTTTTAACAAGAAAACAAAAAAATATGTAAAATAGTTTTTTTTAGTAAAAAAAAAGAAGAAAGATAAACTGATATTGTTGAAACACGTGCATGATTGAGATATAAACAGTGCTGCACTGCTGTGCTGCTGCTGACGTGTGATCTGAGAGCCAGAATATATGCAATGCTAGCGCGAATTGAACGAATGTGGTTAAAGCAAAGTAAAGTGCGATATAATGTGCAGCAATGGGCAAACATCCTTAACACAATGGCAATGAAATGGCGACGAGTGCGTGATAGCTGTACTGGAGACGAATTGTTGCACTGGTAGGGCTAGTGTATTGGATGAGTGCTGCTGTGATTTGTTGACACTACTGTGTTGTTGTTCTGTACGGGGAAGTTTTGGGATTGTTTTGGGATTGCGAGATTATTGATGATACTATACTTGCCTACGTATGAATTGGGAACTGAGCAAACTGGAATTAACTGCTGAGTAAAAGAGAGAGAGAGAGAGAGAACGTATGTGTGGGTGTGTGTATGTATTGTTGGANCAAGANGCAAGCAGAAGACGCATCAGCACGCCACGAGCACACACGCANCACACGTGGACGCCGCATCTTGCTGGTGACATTTACCGGTTATCCANACTTGTTTGCCTCAGTGGACCCACAGTGGCCACACCGAANACANATTAGGACAAATGCAGCACACATATCCGGTATCCCTGGCACCAAANNCAACCGTTGCTT] consensusID : consensus_6503#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 461 fasta sequence [GGCAAGAATTCGGCACGATGGAGCGATATAAGGCAGCAAGGGGCAAACATCCTTAACACAATGGCAATGAAAGGCGACGAGTGCGTGATAGCGTACGGAGCCGAATTGTGCACGGTAGGGCTAGGTATGCATGAGGCTGCGTGATTGTGACACTACTGTGTGTGTTCGTACGGGGAAGTTTGGGATGTTTGGGATGCGAGATTATGATGATACTATACTGCCTACGTATGAATGGGAACGAGCAAACGGAATTAACGCTGAGTAAAAGAGAGAGAGAGAGAGAACGTATGTGTGGGTGTGTGTATGTATGTGTGAGAGAGAGATAGAGAGAGAAAGAGAAGGAGCGATTGCGGGAATTACGTATGANATGTGCTAGGACAAGGCAACGAAAATAGACNAGGAAAACTATCGTTCCGGCAACAACGTGATGCGGAGGAGACTAAAGTCATAGTATGNATAGT] [+] EMBL BX468163 [GGCAAGAATTCGGCACGATGGAGCGATATAAGGCAGCAAGGGGCAAACATCCTTAACACAATGGCAATGAAAGGCGACGAGTGCGTGATAGCGTACGGAGCCGAATTGTGCACGGTAGGGCTAGGTATGCATGAGGCTGCGTGATTGTGACACTACTGTGTGTGTTCGTACGGGGAAGTTTGGGATGTTTGGGATGCGAGATTATGATGATACTATACTGCCTACGTATGAATGGGAACGAGCAAACGGAATTAACGCTGAGTAAAAGAGAGAGAGAGAGAGAACGTATGTGTGGGTGTGTGTATGTATGTGTGAGAGAGAGATAGAGAGAGAAAGAGAAGGAGCGATTGCGGGAATTACGTATGANATGTGCTAGGACAAGGCAACGAAAATAGACNAGGAAAACTATCGTTCCGGCAACAACGTGATGCGGAGGAGACTAAAGTCATAGTATGNATAGT] consensusID : consensus_6503#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 113 fasta sequence [CCGCCCACGCGTCCGAAGAGCGCGCCCTTCCGTTAGTGTGTGTGCATTTAACGAGTGAATGACTCCCGATGATGATTCCTCTTGTTTAATAAATCTACTGGACTGACAATGTG] [+] EMBL BM578483 [CCGCCCACGCGTCCGAAGAGCGCGCCCTTCCGTTAGTGTGTGTGCATTTAACGAGTGAATGACTCCCGATGATGATTCCTCTTGTTTAATAAATCTACTGGACTGACAATGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6503#0 TTGAGATATAAACAGTGCGCACGGTGCGCGATCGTGTGATCGAGAGCCAGAAAATAGCAA 60 consensus_6503#3 ------------------------------------------------------------ consensus_6503#1 ------------------------------------------------------------ consensus_6503#2 ------------------------------------------------------------ consensus_6503#0 GCTAGCGCGAAGGAACGAATGGGTTAAAGCAAAGTAAAGTGCGATATAAGGCAGCAAGGG 120 consensus_6503#3 ------------------------------------------------------------ consensus_6503#1 ------------------------------------------------------------ consensus_6503#2 ------------------------------------------------------------ consensus_6503#0 CAAACATCCTTAACACAATGGCAATGAAAGGCGACGAGTGCGTGATAGCGTACGGAGACG 180 consensus_6503#3 ------------------------------------------------------------ consensus_6503#1 ------------------------------------------------------------ consensus_6503#2 ------------------------------------------------------------ consensus_6503#0 AATTGTGCACGGTAGGGCTAGGTATGCATGAGGCTGCGTGATTGTGACACTACTGTGTGT 240 consensus_6503#3 ------------------------------------------------------------ consensus_6503#1 ------------------------------------------------------------ consensus_6503#2 ------------------------------------------------------------ consensus_6503#0 GTTCGTACGGGGAAGTTTGGGATGTTTGGGATGCGAGATTATGATGATACTATACTGCCT 300 consensus_6503#3 ------------------------------------------------------------ consensus_6503#1 ------------------------------------------------------------ consensus_6503#2 ------------------------------------------------------------ consensus_6503#0 ACGTATGAATGGGAACGAGCAAACGGAATTAACGCTGAGTAAAAGAGAGAGAGAGAGAGA 360 consensus_6503#3 ------------------------------------------------------------ consensus_6503#1 ----------------------------------------------------------CA 2 consensus_6503#2 ------------------------------------------------------------ consensus_6503#0 GAACGTATGTGTGGGTGTGTGTATGTATGTGTGAGAGAGAGATAGAGAGAGAAAGAGAAG 420 consensus_6503#3 ------------------------------------------------------------ consensus_6503#1 AGAATCGCCCGAGGGAAATCATGGCGGTAAAGAGTATCTGATAAACTGTGTTCTGTTTTT 62 consensus_6503#2 ------------------------------------------------------------ consensus_6503#0 GAGCGATTGCGGGGAATTACGTATGAATGTGCTAGGACAAGGCAACGAAAATAGACAAGA 480 consensus_6503#3 ------------------------------------------------------------ consensus_6503#1 ATAAGCTTTTTTTTTTAACAAGAAAACAAAAAAATATGTAAAATAGTTTTTTTTAGTAAA 122 consensus_6503#2 ------------------------------------------------------------ consensus_6503#0 AAATATCGTTCCGCCAACACGTGTGCGGAGGAGACTAAAGTATATATAATATAGAGCAAA 540 consensus_6503#3 ------------------------------------------------------------ consensus_6503#1 AAAAAAGAAGAAAGATAAACTGATATTGTTGAAACACGTGCATGATTGAGATATAAACAG 182 consensus_6503#2 ------------------------------------------------------------ consensus_6503#0 ATGTGAGGAAAATTAAGCAAGAGTTTAGAGAAAGCAACAACAGCAACAACAACAACAAAA 600 consensus_6503#3 ------------------------------------------------------------ consensus_6503#1 TGCTGCACTGCTGTGCTGCTGCTGACGTGTGATCTGAGAGCCAGAATATATGCAATGCTA 242 consensus_6503#2 ------------------------------------------------------------ consensus_6503#0 AAAAAACAACAAAATCACACAGATAGCTTGACCGAGCAAACCGCTTCGTCGAGTAAGATT 660 consensus_6503#3 ------------------------------------------------------------ consensus_6503#1 GCGCGAATTGAACGAATGTGGTTAAAGCAAAGTAAAGTGCGATATAATGTGCAGCAATGG 302 consensus_6503#2 --------------GGCAAGAATTCGGCACGATGGAG--CGATATAAGG--CAGCAAGGG 42 consensus_6503#0 AGGTCGAAGTAAGAGAGTGCATGTGAATGAAGAGAAAGCATTATAAGAGCGCGCCCTTCC 720 consensus_6503#3 -----------------------------CCGCCCACGCGTCCGAAGAGCGCGCCCTTCC 31 consensus_6503#1 GCAAACATCCTTAACACAATGGCAATGAAATGGCGACGAGTGCGTGATAGCTGTACTGGA 362 consensus_6503#2 GCAAACATCCTTAACACAATGGCAATGAAA-GGCGACGAGTGCGTGATAGC-GTAC-GGA 99 * * * * * * consensus_6503#0 GTTAGTGTGTGTGCATTTAACGAGTGAATGACTCCCGATGATGATTCCTCTTGTTTAATA 780 consensus_6503#3 GTTAGTGTGTGTGCATTTAACGAGTGAATGACTCCCGATGATGATTCCTCTTGTTTAATA 91 consensus_6503#1 GACGAATTGT-TGCACTGGTAGGGCTAGTGTATT-GGATGAGTGCTGCTGTGATTTGTTG 420 consensus_6503#2 GCCGAATTGT--GCAC-GGTAGGGCTAG-GTAT--GCATGAG-GCTGC-GTGATTG--TG 149 * *** *** * * * * * **** * * * ** * consensus_6503#0 AATCTACTGTTTTTACAATGTGAAA----------------------------------- 805 consensus_6503#3 AATCTACTGGACTGACAATGTG-------------------------------------- 113 consensus_6503#1 ACACTACTGTGTTGTTGTTCTGTACGGGGAAGTTTTGGGATTGTTTTGGGATTGCGAGAT 480 consensus_6503#2 ACACTACTGTGT--GTGTTC-GTACGGGGAAGTTT-GGGATG--TTTGGGAT-GCGAGAT 202 * ****** * * consensus_6503#0 ------------------------------------------------------------ consensus_6503#3 ------------------------------------------------------------ consensus_6503#1 TATTGATGATACTATACTTGCCTACGTATGAATTGGGAACTGAGCAAACTGGAATTAACT 540 consensus_6503#2 TAT-GATGATACTATACT-GCCTACGTATGAAT-GGGAAC-GAGCAAAC-GGAATTAAC- 256 consensus_6503#0 ------------------------------------------------------------ consensus_6503#3 ------------------------------------------------------------ consensus_6503#1 GCTGAGTAAAAGAGAGAGAGAGAGAGAGAACGTATGTGTGGGTGTGTGTATGTAT-TGTT 599 consensus_6503#2 GCTGAGTAAAAGAGAGAGAGAGAGAG--AACGTATGTGTGGGTGTGTGTATGTATGTGTG 314 consensus_6503#0 ------------------------------------------------------------ consensus_6503#3 ------------------------------------------------------------ consensus_6503#1 GGANCAAGANGCAAGCAGAAGACGCATCAGCACGCCACGAGCACACACGCANCACACGTG 659 consensus_6503#2 AGAGAGAGATAGAGAGAGAAAGAGAAGGAGCG-ATTGCGGGAAT-TACGTATGANATGTG 372 consensus_6503#0 ------------------------------------------------------------ consensus_6503#3 ------------------------------------------------------------ consensus_6503#1 GACGCCGCATCTTGCTGGTGACATTTACCGGTTATCCANACTTGTTTGCCTCAGTGGACC 719 consensus_6503#2 ---CTAGGACAAGGCAACGAAAATAGACNAGGAAAACTATCGTTCCGGCAACAACGTGAT 429 consensus_6503#0 ------------------------------------------------------------ consensus_6503#3 ------------------------------------------------------------ consensus_6503#1 CACAGTGGCCACACCGAANACANATTAGGACAAATGCAGCACACATATCCGGTATCCCTG 779 consensus_6503#2 -GCGGAGG--AGACTAAAGTCATAGTATGNATAGT------------------------- 461 consensus_6503#0 ---------------------- consensus_6503#3 ---------------------- consensus_6503#1 GCACCAAANNCAACCGTTGCTT 801 consensus_6503#2 ---------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||