These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6504#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 961 fasta sequence [CCGCGAGGAGCAGTGCGCATCAATTGTGTCGTGTCGTTCGTGTAAAACCCGTGCTAATGTAAGCTGGCAACTGCTGTGCTAATGCTGCAAACAAGCACTGGGCAGCATAAATTGTACAACATTCGCCGTA-C-CAGCACTACTCAAATTGATCCCGTGGGTGAAAAGTACGCCCACCACCCACCGGCAAAAAGGGCCCCTCCCGTTGGGGGGCAAGTGAATCGAAGTGCGTGCGTATGTTGTAAAAGTGTCTGTATGCGTGTGCGCGTGTGTGTGTCTATGTGTATGTGCGTGTGAAAAAGAAGTCTAACTTAAAAAA-----AAGAAGAAGAAGAGTGGTAGTGTCCCGTAGGCGCACTAACACAAAACGCAACGTCCGCGCGATGGCCGACAAAGGAACGAAATTCGAACGGATGGCCATGACCAAACCCGTCCCGATGAAGCTGTTCGCCGCCTGGGAAGTGGACCGGACACCGTCGAACTGCATTCCAAGATTATGTTCGTTAAAAATTACCCGCCTGTCGCTGCTCACACCCCTGCCGGCCGATCTAACGTCACTGTCGCTGGCGGTACGAATGCAAAGCTCAAAGCGAACGCTTCGCTCGCACGAAATCCCGGTCCCACAGTCGCTGAGCGCCGGGTACGGCAGCACCGGTGTGATCGGCACCGGTAGCATCACGGGTGGCGCAGTCGGCGGAGGCCTGACCGGCGGTACAGGGCTGGCCGGTGGAGGTGGCGTTGGTGGAGGCGGCGGCGTCGGTGGCGGTGGCGGTGGCACCGGTCAGCTCAACTCGCCGCCACTGCTGGAGACGGAGCTGGACCTGCACTTCAGCCTGCAGTATCCGCATTTCATCAAGCGCGACGGCAACCGGTTGCTGATACTGCTGCAGCGCCGCAAAAAGTACAAAACGCGCACCATCCTCGGCTACAAGACGCTGGCCGAGGGCGTGATCCGGATGGACGCGGT] [+] EMBL BM618631 [CCGCGAGGAGCAGTGCGCATCAATTGTGTCGTGTCGTTCGTGTAAAACCCGTGCTAATGTAAGCTGGCAACTGCTGTGCTAATGCTGCAAACAAGCACTGGGCAGCATAAATTGTACAACATTCGCCGTA C CAGCACTACTCAAATTGATCCCGTGGGTGAAAAGTACGCCCACCACCCACCGGCAAAAAGGGCCCCTCCCGTTGGGGGGCAAGTGAATCGAAGTGCGTGCGTATGTTGTAAAAGTGTCTGTATGCGTGTGCGCGTGTGTGTGTCTATGTGTATGTGCGTGTGAAAAAGAAGTCTAACTTAAAAAA AAGAAGAAGAAGAGTGGTAGTGTCCCGTAGGCGCACTAACACAAAACGCAACGTCCGCGCGATGGCCGACAAAGGAACGAAATTCGAACGGATGGCCATGACCAAACCCGTCCCGATGAAGCTGTTCGCCGCCTGGGAAGTGGACCGGACACCGTCGAACTGCATTCCAAGATTATGTTCGTTAAAAATTACCCG CTGTCGCTGCTCACACCCCTGCCGGCCGATCTAACGTCACTGTCGCTGGCGGTACGAATGCAAAGCTCAAAGCGAACGCTTCGCTCGCACGAAATCCCGGTCCCACAGTCGCTGAG ] [+] EMBL BM595390 [ ccgGTAAGCTGGCAACTGCTGTGCTAATGCTGCAAACAAGCACTGGGCAGCATAAATTTTACAACATTCGCCGTAGCACAGCACTATTCAAATTGATCCCGTGGGTGAAAAGTACGCCCACCACCCCCCGGCAAAAAGGGCCCCTCCCGTTGGGGGGCAAGTGAATCGAAGTGCGTGCGTATGTTGTAAAAGTGTCTGTGTGCCTGTGCGCGTGTGTGTGTCTATGTGTATGTGCGTGTGAAAAAGAAGTCTAACTAAAAAAAAGAAGAAGAAGAAGAAGAGTGGTAGTGTCCCGTAGGCGCACTAACACAAAACGCAACGTCCGCGCGATGGCCGACAAAGGAACGAAATTCGAACGGATGGCCATGACCAAACCCGTCCCGATGAAGCTGTTCGCCGCCTGGGAAGTGGACCGGACACCGTCGAACTGCATTCCAAGATTATGTTCGTTAAAAATTACCCGCCTGTCCCTGCTCACACCCCTGCCGGCCGATCTAACGTCACTGTCGCTGGCGGTTCGAATGCAAAGCTCAAAGCGAACGCTTCGCTCGCACGAAATCCCGGTCCCACAGTCGCTGAGCGCCGGGTACGGCAGCACCGGTGTGATCGGCACCGGTAGCATCACGGGTGGCGC ] [+] EMBL BM633294 [ ccgCCGTAGGCGCACTAACACAAAACGCAACGTCCGCGCGATGGCCGACAAAGGAACGAAATTCGAACGGATGGCCATGACCAAACCCGTCCCGATGAAGCTGTTCGCCGCCTGGGAAGTGGACCGGACACCATCGAACTGCATTCCAAGATTATGTTCGTTAAAAATTACCCGCCTGTCGCTGCTCACACCCCTGCCGGCCGATCTAACGTCACTGTCGCTGGCGGTACGAATGCAAAGCTCAAAGCGAACGCTTCGCTCGCACGAAATCCCGGTCCCACAGTCGCTGAGCGCCGGGTACGGCAGCACCGGTGTGATCGGCACCGGTAGCATCACGGGTGGCGCAGTCGGCGGAGGCCTGACCGGCGGTACAGGGCTGGCCGGTGGAGGTGGCGTTGGTGGAGGCGGCGGCGTCGGTGGCGGTGGCGGTGGCACCGGTCAGCTCAACTCGCCGCCACTGCTGGAGACGGAGCTGGACCTGCACTTCAGCCTGCAGTATCCGCATTTCATCAAGCGCGACGGCAACCGGTTGCTGATACTGCTGCAGCGCCGCAAAAAGTACAAAACGCGCACCATCCTCGGCTACAAGACGCTGGCCGAGGGCGTGATCCGGATGGACGCGGT] consensusID : consensus_6504#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 415 fasta sequence [AAAACCCGTGCTAATGTAAGCTGGCAACTGCTGTGCTAATGCTGCAAACAAGCACTGGGCAGCATAAATTTTACAACATTCGCCGTAGCACAGCACTATTCAATGGCCCACGGGTGACGGAGGTTGGAGCTTCTTCTTCTTCTTCTTCACCGACCAAATTCATTCATTGACCATTTGGGCGTGTTAGTGTGTGTGTGTGTGCGCAAGTGTGCGCAGGCAGTTAGTGCGCGTGTGTTTATCAAATTGATCCCGTGGGTGAAAAGTACGCCCACCACCCCCCGGCAAAAAGGGCCCCTCCCGTTGGGGGGCAAGTGAATCGAAGTGCGTGCGTATGTTGTAAAAGTGTCTGTGTGCCTGTGCGCGTGTGTGTGTCTATGTGTATGTGCGTGTGAAAAAGAAGTCTAACTAAAAAAAA] [+] EMBL AGA282357 [AAAACCCGTGCTAATGTAAGCTGGCAACTGCTGTGCTAATGCTGCAAACAAGCACTGGGCAGCATAAATTTTACAACATTCGCCGTAGCACAGCACTATTCAATGGCCCACGGGTGACGGAGGTTGGAGCTTCTTCTTCTTCTTCTTCACCGACCAAATTCATTCATTGACCATTTGGGCGTGTTAGTGTGTGTGTGTGTGCGCAAGTGTGCGCAGGCAGTTAGTGCGCGTGTGTTTATCAAATTGATCCCGTGGGTGAAAAGTACGCCCACCACCCCCCGGCAAAAAGGGCCCCTCCCGTTGGGGGGCAAGTGAATCGAAGTGCGTGCGTATGTTGTAAAAGTGTC ] [-] EMBL AGA280734 [ GCACTGGGCAGCATAAATTTTACAACATTCGCCGTAGCACAGCACTATTCAATGGCCCACGGGTGACGGAGGTTGGAGCTTCTTCTTCTTCTTCTTCACCGACCAAATTCATTCATTGACCATTTGGGCGTGTTAGTGTGTGTGTGTGTGCGCAAGTGTGCGCAGGCAGTTAGTGCGCGTGTGTTTATCAAATTGATCCCGTGGGTGAAAAGTACGCCCACCACCCCCCGGCAAAAAGGGCCCCTCCCGTTGGGGGGCAAGTGAATCGAAGTGCGTGCGTATGTTGTAAAAGTGTCTGTGTGCCTGTGCGCGTGTGTGTGTCTATGTGTATGTGCGTGTGAAAAAGAAGTCTAACTAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6504#0 CCGCGAGGAGCAGTGCGCATCAATTGTGTCGTGTCGTTCGTGTAAAACCCGTGCTAATGT 60 consensus_6504#1 -------------------------------------------AAAACCCGTGCTAATGT 17 ***************** consensus_6504#0 AAGCTGGCAACTGCTGTGCTAATGCTGCAAACAAGCACTGGGCAGCATAAATTGTACAAC 120 consensus_6504#1 AAGCTGGCAACTGCTGTGCTAATGCTGCAAACAAGCACTGGGCAGCATAAATTTTACAAC 77 ***************************************************** ****** consensus_6504#0 ATTCGCCGTACCA--GCACTACTCAAATTGATCCCGTGGGTGAAAAGTACGCCCACCACC 178 consensus_6504#1 ATTCGCCGTAGCACAGCACTATTCAA--TGG-CCCACGGGTGACGGAGGTTGGAGCTTCT 134 ********** ** ****** **** ** *** ****** * * consensus_6504#0 CACCGGCAAAAAGGGCCCCTCCCGTTGGGGGGCAAGTGAATCGAAGTGCGTGCGTATGTT 238 consensus_6504#1 TCTT-----------CTTCTTCTTCACCGACCAAATTCATTCATTGACCATTTGGGCGTG 183 * ** * * ** * * ** * * * * ** consensus_6504#0 GTAAAAGTGTCTGTATGCGTGTGCGCGTGTGTGTGTCTATGTGTATGTGCGTGTGAAAAA 298 consensus_6504#1 TT---AGTGTGTGTGTGTGTGCGCAAGTGTGCGCAGGCA-GTTAGTGCGCGTGTGTTTAT 239 * ***** *** ** *** ** ***** * * ** ** ******* * consensus_6504#0 GAAGTCTAACTTAAAAAAAAGAAGAAGAAGAGTGGTAGTGTCCCGTAGGCGCACTAACAC 358 consensus_6504#1 CAAATTGATCCC--------GTGGGTGAAAAGTA----CGCCCACCA--CCCCCCGGCAA 285 ** * * * * * *** *** * ** * * * * ** consensus_6504#0 AAAACGCAACGTCCGCGCGATGGCCGACAAAGGAA-CGAAATTCGAACGGATGGCCATGA 417 consensus_6504#1 AAAGGGC----CCCTCCCGTTGGGGGGCAAGTGAATCGAAGTGCGTGCGTATG----TTG 337 *** ** ** * ** *** * *** *** **** * ** ** *** * consensus_6504#0 CCAAACCCGTCCCGATGAAGCTGTTCGCCGCCTGGGAAGTGGACCGGACACCGTCGAACT 477 consensus_6504#1 TAAAA---GTGTCTGTGTGCCTGTGCGC----------GTGTGTGTGTCTATGTGTATGT 384 *** ** * ** **** *** *** * * ** * * consensus_6504#0 GCATTCCAAGATTATGTTCG-TTAAAAATTACCCGCCTGTCGCTGCTCACACCCCTGCCG 536 consensus_6504#1 GCGTGTGAAAAAGAAGTCTAACTAAAAAAAA----------------------------- 415 ** * ** * * ** ****** * consensus_6504#0 GCCGATCTAACGTCACTGTCGCTGGCGGTACGAATGCAAAGCTCAAAGCGAACGCTTCGC 596 consensus_6504#1 ------------------------------------------------------------ consensus_6504#0 TCGCACGAAATCCCGGTCCCACAGTCGCTGAGCGCCGGGTACGGCAGCACCGGTGTGATC 656 consensus_6504#1 ------------------------------------------------------------ consensus_6504#0 GGCACCGGTAGCATCACGGGTGGCGCAGTCGGCGGAGGCCTGACCGGCGGTACAGGGCTG 716 consensus_6504#1 ------------------------------------------------------------ consensus_6504#0 GCCGGTGGAGGTGGCGTTGGTGGAGGCGGCGGCGTCGGTGGCGGTGGCGGTGGCACCGGT 776 consensus_6504#1 ------------------------------------------------------------ consensus_6504#0 CAGCTCAACTCGCCGCCACTGCTGGAGACGGAGCTGGACCTGCACTTCAGCCTGCAGTAT 836 consensus_6504#1 ------------------------------------------------------------ consensus_6504#0 CCGCATTTCATCAAGCGCGACGGCAACCGGTTGCTGATACTGCTGCAGCGCCGCAAAAAG 896 consensus_6504#1 ------------------------------------------------------------ consensus_6504#0 TACAAAACGCGCACCATCCTCGGCTACAAGACGCTGGCCGAGGGCGTGATCCGGATGGAC 956 consensus_6504#1 ------------------------------------------------------------ consensus_6504#0 GCGGT 961 consensus_6504#1 ----- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||