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Anopheles gambiae
cluster # 6506 cluster # 6506       Sequences # 5       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6506#0 length = 891 sequences # 3  
consensus_6506#1 length = 650 sequences # 1  
consensus_6506#2 length = 518 sequences # 1  

consensusID : consensus_6506#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 891
fasta sequence
                              [CCGGGACAAGCTCAGCCCAAAGTATCGTCAGTGCAGGCAGGCGAAGCAGGCGTCGATCTATCAAAATGCTGCCACCATCAACGGTACGAAGCACCACGCGGCATCAGCAACATCGGATTTGCGCAGAACGAAAGCATCTTTCTGTAAAGCTTTACAGTGAGACATG----CTCTCTCTCCCTCGTTTTCTCTCTCTCTTTCTCTCTATTAGTAAATAATAGCGGGCAGGGGATACAGTTTTCTGTAGCAAGTTCTAATGCAGCTAGTTAAATAGATGGTACTACAATCAGACTAGCGGAGCAAGTAGAATCAAACCATTGGGAACAGATTTCAGCACACAATTTAAAGCTAGTATTTAAATTTAGATGCAACACAGTGTGACATTCCGATAACGATGTGCATTGATATTATTCGTAAGTAAGCGATTAGTAAGGCGGGATCGCTCGCAGGTT-G-AGCGTACAGTATTCATGACAGTATTTCGATCGGGTCAGGATTTGGTGTACTAAAGCCCAATGGGAAGTTAAAGGTTTCATGGCGAACCATAGATCCCCAGAACCAGTTTACCGAGCGCGCATTGGGAACATACACGATCGCAACACGAACAA-AAAAAAACGGCAACATGTGATAACAGATGCTACAAACCTTCCGGATGAGGCACGATTTCATCGACCTACTTTATTGATAGTTATTTGTAAGATATTTAAGTACTAAGGACATCTGCAGCAGCAAGTATTATTGCAACCTTCACTACCTTTAGGGCAAATAGGTACAGCAAGTATTAGGCAACTCCGGGCTCTGCATAAGGG-TATGCAAGATAGCTAAAGTAAGTGCAATATAACGGTGTTGTTGAACACGTTAGTGTAGTTTCTACCTAGTGCTACTGATATTCAAACCT]

[+] EMBL BM647245             [CCGGGACAAGCTCAGCCCAAAGTATCGTCAGTGCAGGCAGGCGAAGCAGGCGTCGATCTATCAAAATGCTGCCACCATCAACGGTACGAAGCACCACGCGGCATCAGCAACATCGGATTTGCGCAGAACGAAAGCATCTTTCTGTAAAGCTTTACAGTGAGACATG    CTCTCTCTCCCTCGTTTTCTCTCTCTCTTTCTCTCTATTAGTAAATAATAGCGGGCAGGGGATACAGTTTTCTGTAGCAAGTTCTAATGCAGCTAGTTAAATAGATGGTACTACAATCAGACTAGCGGAGCAAGTAGAATCAAACCATTGGGAACAGATTTCAGCACACAATTTAAAGCTAGTATTTAAATTTAGATGCAACACAGTGTGACATTCCGATAACGATGTGCATTGATATTATTCGTAAGTAAGCGATTAGTAAGGCGGGATCGCTCGCAGGTT G AGCGTACAGTATTCATGACAGTATTTCGATCGGGTCAGGATTTGGTGTACTAAAGCCCAATGGGAAGTTAAAGGTTTCATGGCGAACCATAGATCCCCAGAACCAGTTTACCGAGCGCGCATTGGGAACATACACGATCGCAACACGAACAACAAAAAAACGGCAACATGTGATAACAGATGCTAC AACCTTCCGGATGAGGCACGATTTCATCGACCTACTTTATTGATAGTTATTTGTAAGATATTTAAGTACTAAGG                                                                                                                                                                                       ]
[+] EMBL BX621053             [                                                                                                                          GCAGAACGAAAGCATCTTTCTGTAAAGCTTTACAGTAAGACATGCTCTCTCTCTCTCCCTCGTTTTCTCTCTCTCTTTCTCTCTATTAGTAAATAATAGCGGGCAGGGGATACAGTTTTTTGTAGCAAGTTCTAATGCAGCTAGTTAAATAGATGGTAATACAATCAGACTAGCGGAGC   TAGAATCAAACCATTGGGAACAGATTTCAGCACACAATTTAAAGCTAGTATTTAAATTTAGATGCAACACAGTGTGACATTCCGATAACGATGTGCATTGATATTATTCGTAAGTAAGCGATTAGTAAGGCGGGATCGCTCGCAGGTTCGCAGCATACAGCATTCATGACAGTATTTCGAACGGGTCAGGATTTGGTGTACTAAAGCCCAATGGGAAGTTAAAGGTTTCATGGCGAACCATAGATCCCCAGAACCAGTTTACCGAGCGCGCATTGGGAACATACACGATCGCAACACGAACAA AAAAAAACGGCAACATGTGATAACAGATGCTACAAACCTTCCGGATGAGGCACGATTTCATCGACCTACTTTATTGATAGTTATTTGTAAGATATTTAAGTACTAAGGACATCTGCAGCAGCAAGTATTATTGCAACCTTCACTACCTTTAGGGCAAATAGGTACAGCAAGTATTAGGCAACTCCGGGCTCTGCATAAGGG TATGCA                                                                                   ]
[+] EMBL BM594121             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ccgGTTAAAGGTTTCATGGCGAACCATAGATCCCCAGAACCAGTTTACCGAGCGCGCATTGGGAACATACACGATCGCAACACGAACAA AAAAAAACGGCAACATGTGATAACAGATGCTACAAACCTTCCGGATGAGGCACGATTTCATCGACCTACTTTATTGATAGTTATTTGTAAGATATTTAAGTACTAAGGACATCTGCAGCAGCAAGTATTATTGCAACCTTCACTACCTTTAGGGCAAATAGGTACAGCAAGTATTAGGCAACTCCGGGCTCTGCATAAGGGTTATGCAAGATAGCTAAAGTAAGTGCAATATAACGGTGTTGTTGAACACGTTAGTGTAGTTTCTACCTAGTGCTACTGATATTCAAACCT]


>consensus_6506#0 CCGGGACAAGCTCAGCCCAAAGTATCGTCAGTGCAGGCAGGCGAAGCAGGCGTCGATCTA TCAAAATGCTGCCACCATCAACGGTACGAAGCACCACGCGGCATCAGCAACATCGGATTT GCGCAGAACGAAAGCATCTTTCTGTAAAGCTTTACAGTGAGACATGCTCTCTCTCCCTCG TTTTCTCTCTCTCTTTCTCTCTATTAGTAAATAATAGCGGGCAGGGGATACAGTTTTCTG TAGCAAGTTCTAATGCAGCTAGTTAAATAGATGGTACTACAATCAGACTAGCGGAGCAAG TAGAATCAAACCATTGGGAACAGATTTCAGCACACAATTTAAAGCTAGTATTTAAATTTA GATGCAACACAGTGTGACATTCCGATAACGATGTGCATTGATATTATTCGTAAGTAAGCG ATTAGTAAGGCGGGATCGCTCGCAGGTTGAGCGTACAGTATTCATGACAGTATTTCGATC GGGTCAGGATTTGGTGTACTAAAGCCCAATGGGAAGTTAAAGGTTTCATGGCGAACCATA GATCCCCAGAACCAGTTTACCGAGCGCGCATTGGGAACATACACGATCGCAACACGAACA AAAAAAAACGGCAACATGTGATAACAGATGCTACAAACCTTCCGGATGAGGCACGATTTC ATCGACCTACTTTATTGATAGTTATTTGTAAGATATTTAAGTACTAAGGACATCTGCAGC AGCAAGTATTATTGCAACCTTCACTACCTTTAGGGCAAATAGGTACAGCAAGTATTAGGC AACTCCGGGCTCTGCATAAGGGTATGCAAGATAGCTAAAGTAAGTGCAATATAACGGTGT TGTTGAACACGTTAGTGTAGTTTCTACCTAGTGCTACTGATATTCAAACCT



consensusID : consensus_6506#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 650
fasta sequence
                              [CCGGCGATTAGTAAGGCGGGATCGCTCGCAGGTTGAGCGTACAGTATTCATGCAGCTAGTTAAATAGATGGTACTACAATCAGACTAGCGGAGCAAGTAGAATCAAACCATTGGGAACAGATTTCAGCACACAATTTAAAGCTAGTATTTAAATTTAGATGCAACACAGTGTGACATTCCGATAACGATGTGCATTGATATTATTCGTAAGTAAGCGATTAGTAAGGCGGGATCGCTCGCAGGTTGAGCGTACAGTATTCATGACAGTATTTCGATCGGGTCAGGATTTGGTGTACTAAAGCCCAATGGGAAGTTAAAGGTTTCATGGCGAACCATAGATCCCCAGAACCAGTTTACCGAGCGCGCATTGGGAACATACACGATCGCAACACGAACAACAAAAAAACGGCAACATGTGATAACAGATGCTACAACCTTCCGGATGAGGCACGATTTCATCGACCTACTTTATTGATAGTTATTTGTAAGATATTTAAGTACTAAGGACATCTGCAGCAGCAAGTATTATTGCAACCTTCACTACCTTTAGGGCAAATAGGTACAGCAAGTATTAGGCAACTCCGGGCTCTGCATAAGGGTTATGCAAGATAGCTAAAGTAAGTGCAATATAACGGTGTTGTTGAACACGT]

[+] EMBL BM622883             [CCGGCGATTAGTAAGGCGGGATCGCTCGCAGGTTGAGCGTACAGTATTCATGCAGCTAGTTAAATAGATGGTACTACAATCAGACTAGCGGAGCAAGTAGAATCAAACCATTGGGAACAGATTTCAGCACACAATTTAAAGCTAGTATTTAAATTTAGATGCAACACAGTGTGACATTCCGATAACGATGTGCATTGATATTATTCGTAAGTAAGCGATTAGTAAGGCGGGATCGCTCGCAGGTTGAGCGTACAGTATTCATGACAGTATTTCGATCGGGTCAGGATTTGGTGTACTAAAGCCCAATGGGAAGTTAAAGGTTTCATGGCGAACCATAGATCCCCAGAACCAGTTTACCGAGCGCGCATTGGGAACATACACGATCGCAACACGAACAACAAAAAAACGGCAACATGTGATAACAGATGCTACAACCTTCCGGATGAGGCACGATTTCATCGACCTACTTTATTGATAGTTATTTGTAAGATATTTAAGTACTAAGGACATCTGCAGCAGCAAGTATTATTGCAACCTTCACTACCTTTAGGGCAAATAGGTACAGCAAGTATTAGGCAACTCCGGGCTCTGCATAAGGGTTATGCAAGATAGCTAAAGTAAGTGCAATATAACGGTGTTGTTGAACACGT]


>consensus_6506#1 CCGGCGATTAGTAAGGCGGGATCGCTCGCAGGTTGAGCGTACAGTATTCATGCAGCTAGT TAAATAGATGGTACTACAATCAGACTAGCGGAGCAAGTAGAATCAAACCATTGGGAACAG ATTTCAGCACACAATTTAAAGCTAGTATTTAAATTTAGATGCAACACAGTGTGACATTCC GATAACGATGTGCATTGATATTATTCGTAAGTAAGCGATTAGTAAGGCGGGATCGCTCGC AGGTTGAGCGTACAGTATTCATGACAGTATTTCGATCGGGTCAGGATTTGGTGTACTAAA GCCCAATGGGAAGTTAAAGGTTTCATGGCGAACCATAGATCCCCAGAACCAGTTTACCGA GCGCGCATTGGGAACATACACGATCGCAACACGAACAACAAAAAAACGGCAACATGTGAT AACAGATGCTACAACCTTCCGGATGAGGCACGATTTCATCGACCTACTTTATTGATAGTT ATTTGTAAGATATTTAAGTACTAAGGACATCTGCAGCAGCAAGTATTATTGCAACCTTCA CTACCTTTAGGGCAAATAGGTACAGCAAGTATTAGGCAACTCCGGGCTCTGCATAAGGGT TATGCAAGATAGCTAAAGTAAGTGCAATATAACGGTGTTGTTGAACACGT



consensusID : consensus_6506#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 518
fasta sequence
                              [ACCGACGTTTACCGCCTACCAGTATCCGACCACGATGCGCAACCTTGGCGTTGGGGTGGGAAATTTCGCTGCCGGTGTGGCCCTTATCATCGTACCGTACCTGTGGCTGCTGGAACACGTTGATCAGTACCTGCCGATGACGATCATGGGTGTGTTCAGCATTGTCGGTGCCCTGTCGCTGGCCATCCTAAAGGACAAGCTCAGCCCAAAGTATCGTCAGCGCAGGCAGGCGAAGCAGGCGTCGATCTATCAAAATGCTGCCACCATCAACGGTACGAAGCACCACGCGGCGTTGGAAAACGACGATCCAAAACGGCGCCTGGGTTCACACTTCCCGCACAGCACGGACGATGGGGCCGGCATCAGCAACATCGGATTTGCGCAGAACGAAAGCATCTTTCTGTAAAGCTTTACAGTAAGACATGCTCTCTCTCTCTCCCTCGTTTTCTCTCTCTCTTTCTCTCTATTAGTAAATAATAGCGGGCAGGGGATACAGTTTTTTGTAGCAAGTTCTAATG]

[+] EMBL BX623649             [ACCGACGTTTACCGCCTACCAGTATCCGACCACGATGCGCAACCTTGGCGTTGGGGTGGGAAATTTCGCTGCCGGTGTGGCCCTTATCATCGTACCGTACCTGTGGCTGCTGGAACACGTTGATCAGTACCTGCCGATGACGATCATGGGTGTGTTCAGCATTGTCGGTGCCCTGTCGCTGGCCATCCTAAAGGACAAGCTCAGCCCAAAGTATCGTCAGCGCAGGCAGGCGAAGCAGGCGTCGATCTATCAAAATGCTGCCACCATCAACGGTACGAAGCACCACGCGGCGTTGGAAAACGACGATCCAAAACGGCGCCTGGGTTCACACTTCCCGCACAGCACGGACGATGGGGCCGGCATCAGCAACATCGGATTTGCGCAGAACGAAAGCATCTTTCTGTAAAGCTTTACAGTAAGACATGCTCTCTCTCTCTCCCTCGTTTTCTCTCTCTCTTTCTCTCTATTAGTAAATAATAGCGGGCAGGGGATACAGTTTTTTGTAGCAAGTTCTAATG]


>consensus_6506#2 ACCGACGTTTACCGCCTACCAGTATCCGACCACGATGCGCAACCTTGGCGTTGGGGTGGG AAATTTCGCTGCCGGTGTGGCCCTTATCATCGTACCGTACCTGTGGCTGCTGGAACACGT TGATCAGTACCTGCCGATGACGATCATGGGTGTGTTCAGCATTGTCGGTGCCCTGTCGCT GGCCATCCTAAAGGACAAGCTCAGCCCAAAGTATCGTCAGCGCAGGCAGGCGAAGCAGGC GTCGATCTATCAAAATGCTGCCACCATCAACGGTACGAAGCACCACGCGGCGTTGGAAAA CGACGATCCAAAACGGCGCCTGGGTTCACACTTCCCGCACAGCACGGACGATGGGGCCGG CATCAGCAACATCGGATTTGCGCAGAACGAAAGCATCTTTCTGTAAAGCTTTACAGTAAG ACATGCTCTCTCTCTCTCCCTCGTTTTCTCTCTCTCTTTCTCTCTATTAGTAAATAATAG CGGGCAGGGGATACAGTTTTTTGTAGCAAGTTCTAATG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6506#0      CCGGGACAAGCTCAGCCCAAAGTATCGTCAGTGCAGGCAGGCGAAGCAGGCGTCGATCTA 60
consensus_6506#1      ------------------------------------------------------------
consensus_6506#2      ------------------------------------------------------------
                                                                                  

consensus_6506#0      TCAAAATGCTGCCACCATCAACGGTACGAAGCACCACGCGGCATCAGCAACATCGGATTT 120
consensus_6506#1      ------------------------------------------------------------
consensus_6506#2      ------------------------------------------------------------
                                                                                  

consensus_6506#0      GCGCAGAACGAAAGCATCTTTCTGTAAAGCTTTACAGTGAGACATGCTCTCTCTCCCTCG 180
consensus_6506#1      ------------------------------------------------------------
consensus_6506#2      ------------------------------------------------------------
                                                                                  

consensus_6506#0      TTTTCTCTCTCTCTTTCTCTCTATTAGTAAATAATAGCGGGCAGGGGATACAGTTTTCTG 240
consensus_6506#1      -----------------------CCGGCGATTAGTAAGGCGGGATCGCTCGCAGGTTGAG 37
consensus_6506#2      ------------------------------------------------------------
                                                                                  

consensus_6506#0      TAGCAAGTTCTAATGCAGCTAGTTAAATAGATGGTACTACAATCAGACTAGCGGAGCAAG 300
consensus_6506#1      CGTACAGTATTCATGCAGCTAGTTAAATAGATGGTACTACAATCAGACTAGCGGAGCAAG 97
consensus_6506#2      -------------------------------------------------------ACCGA 5
                                                                              *   

consensus_6506#0      TAGAATCAAACCATTGGGAACAGATTTCAGCACACAAT-TTAAAGCTAGTATTT-AAATT 358
consensus_6506#1      TAGAATCAAACCATTGGGAACAGATTTCAGCACACAAT-TTAAAGCTAGTATTT-AAATT 155
consensus_6506#2      CGTTTACCGCCTACCAGTATCCGACCACGATGCGCAACCTTGGCGTTGGGGTGGGAAATT 65
                            *   * *   * * * **   *    * ***  **   * * *  *   *****

consensus_6506#0      TAGATGCAACACAGTGTGACATTCCGATAACGATGTGCATTGATATTATTCGTAAGTAAG 418
consensus_6506#1      TAGATGCAACACAGTGTGACATTCCGATAACGATGTGCATTGATATTATTCGTAAGTAAG 215
consensus_6506#2      TCGCTGC----CGGTGTGGC-CCTTATCATCGTACCGTACCTGTGGCTGCTGGAACACGT 120
                      * * ***    * ***** *        * **    * *    *       * **     

consensus_6506#0      CGATTAGTAA--GGCGGGATCGCTCGCAGGTTGAGCGTACAGTATTCATGACAGTATTTC 476
consensus_6506#1      CGATTAGTAA--GGCGGGATCGCTCGCAGGTTGAGCGTACAGTATTCATGACAGTATTTC 273
consensus_6506#2      TGATCAGTACCTGCCGATGACGATCATGGGT---GTGTTCAGCATTGTCGGTGCCCTGTC 177
                       *** ****   * **    ** **   ***   * ** *** ***   *      * **

consensus_6506#0      GATCGGGTCAGGATTTGGTGTACTAAAGCCCAATGGGAAGTTAAAGGTTTCATGGCGAAC 536
consensus_6506#1      GATCGGGTCAGGATTTGGTGTACTAAAGCCCAATGGGAAGTTAAAGGTTTCATGGCGAAC 333
consensus_6506#2      GCTGGCCATCCTAAAGGACAAGCTCA-GCCCAAAGTATCGTCAGCGCAGGCA-GGCGAAG 235
                      * * *       *   *     ** * ****** *    ** *  *    ** ****** 

consensus_6506#0      CATAGATCCCCAGAACCAGTTTACCGAGCGCGCATTGGGAACATACACGATCGCAACACG 596
consensus_6506#1      CATAGATCCCCAGAACCAGTTTACCGAGCGCGCATTGGGAACATACACGATCGCAACACG 393
consensus_6506#2      CAGGCGTC----GATCTA--TCAAAATGCTGCCACCATCAACG-GTACGAA-GCACCACG 287
                      **    **    ** * *  * *    **   **     ***    ****  *** ****

consensus_6506#0      AACAA-AAAAAAACGGCAACATGTGATAACAGATGCTACAAACCTTCCGGATGAGGCACG 655
consensus_6506#1      AACAACAAAAAAACGGCAACATGTGATAACAGATGCTACAA-CCTTCCGGATGAGGCACG 452
consensus_6506#2      CGGCGTTGGAAAACGACGATCCAAAACGGCGCCTGGGTTCACACTTCCCG-CACAGCACG 346
                               ****** * *      *   *   **     *  ***** *     *****

consensus_6506#0      ATTTCATCGACCTACTTTATTGATAGTT-ATTTGTAAGATATTTAAGTA-----CTAAGG 709
consensus_6506#1      ATTTCATCGACCTACTTTATTGATAGTT-ATTTGTAAGATATTTAAGTA-----CTAAGG 506
consensus_6506#2      GACGATGGGGCCGGCATCAGCAACATCGGATTTGCGCAGAACGAAAGCATCTTTCTGTAA 406
                              * **  * * *   * *    *****      *   *** *     **    

consensus_6506#0      ACATCTGCAGCAGCAAGTATTATTGCAACCTTCACTACCTTTAGGGCAAATAGGTACAGC 769
consensus_6506#1      ACATCTGCAGCAGCAAGTATTATTGCAACCTTCACTACCTTTAGGGCAAATAGGTACAGC 566
consensus_6506#2      AGCTTTACAGTAAGACATGCTCTCTCTCTCTCCCTCGTTTTCTCTCTCTCTTTCTCT--C 464
                      *  * * *** *  *  *  * *  *   ** *      **         *   *    *

consensus_6506#0      AAGTATTAGGCAACTCCGGGCTCTGCATAAGGGT-ATGCAAGATAGCTAAAGTAAGTGCA 828
consensus_6506#1      AAGTATTAGGCAACTCCGGGCTCTGCATAAGGGTTATGCAAGATAGCTAAAGTAAGTGCA 626
consensus_6506#2      TATTAGTAAATAATAGCGGGCAGGGGATACAGTTTTTTGTAGCAAGTTCTAATG------ 518
                       * ** **   **   *****   * ***  * *  *   **  ** *  * *       

consensus_6506#0      ATATAACGGTGTTGTTGAACACGTTAGTGTAGTTTCTACCTAGTGCTACTGATATTCAAA 888
consensus_6506#1      ATATAACGGTGTTGTTGAACACGT------------------------------------ 650
consensus_6506#2      ------------------------------------------------------------
                                                                                  

consensus_6506#0      CCT 891
consensus_6506#1      ---
consensus_6506#2      ---
                         




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)