These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6506#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 891 fasta sequence [CCGGGACAAGCTCAGCCCAAAGTATCGTCAGTGCAGGCAGGCGAAGCAGGCGTCGATCTATCAAAATGCTGCCACCATCAACGGTACGAAGCACCACGCGGCATCAGCAACATCGGATTTGCGCAGAACGAAAGCATCTTTCTGTAAAGCTTTACAGTGAGACATG----CTCTCTCTCCCTCGTTTTCTCTCTCTCTTTCTCTCTATTAGTAAATAATAGCGGGCAGGGGATACAGTTTTCTGTAGCAAGTTCTAATGCAGCTAGTTAAATAGATGGTACTACAATCAGACTAGCGGAGCAAGTAGAATCAAACCATTGGGAACAGATTTCAGCACACAATTTAAAGCTAGTATTTAAATTTAGATGCAACACAGTGTGACATTCCGATAACGATGTGCATTGATATTATTCGTAAGTAAGCGATTAGTAAGGCGGGATCGCTCGCAGGTT-G-AGCGTACAGTATTCATGACAGTATTTCGATCGGGTCAGGATTTGGTGTACTAAAGCCCAATGGGAAGTTAAAGGTTTCATGGCGAACCATAGATCCCCAGAACCAGTTTACCGAGCGCGCATTGGGAACATACACGATCGCAACACGAACAA-AAAAAAACGGCAACATGTGATAACAGATGCTACAAACCTTCCGGATGAGGCACGATTTCATCGACCTACTTTATTGATAGTTATTTGTAAGATATTTAAGTACTAAGGACATCTGCAGCAGCAAGTATTATTGCAACCTTCACTACCTTTAGGGCAAATAGGTACAGCAAGTATTAGGCAACTCCGGGCTCTGCATAAGGG-TATGCAAGATAGCTAAAGTAAGTGCAATATAACGGTGTTGTTGAACACGTTAGTGTAGTTTCTACCTAGTGCTACTGATATTCAAACCT] [+] EMBL BM647245 [CCGGGACAAGCTCAGCCCAAAGTATCGTCAGTGCAGGCAGGCGAAGCAGGCGTCGATCTATCAAAATGCTGCCACCATCAACGGTACGAAGCACCACGCGGCATCAGCAACATCGGATTTGCGCAGAACGAAAGCATCTTTCTGTAAAGCTTTACAGTGAGACATG CTCTCTCTCCCTCGTTTTCTCTCTCTCTTTCTCTCTATTAGTAAATAATAGCGGGCAGGGGATACAGTTTTCTGTAGCAAGTTCTAATGCAGCTAGTTAAATAGATGGTACTACAATCAGACTAGCGGAGCAAGTAGAATCAAACCATTGGGAACAGATTTCAGCACACAATTTAAAGCTAGTATTTAAATTTAGATGCAACACAGTGTGACATTCCGATAACGATGTGCATTGATATTATTCGTAAGTAAGCGATTAGTAAGGCGGGATCGCTCGCAGGTT G AGCGTACAGTATTCATGACAGTATTTCGATCGGGTCAGGATTTGGTGTACTAAAGCCCAATGGGAAGTTAAAGGTTTCATGGCGAACCATAGATCCCCAGAACCAGTTTACCGAGCGCGCATTGGGAACATACACGATCGCAACACGAACAACAAAAAAACGGCAACATGTGATAACAGATGCTAC AACCTTCCGGATGAGGCACGATTTCATCGACCTACTTTATTGATAGTTATTTGTAAGATATTTAAGTACTAAGG ] [+] EMBL BX621053 [ GCAGAACGAAAGCATCTTTCTGTAAAGCTTTACAGTAAGACATGCTCTCTCTCTCTCCCTCGTTTTCTCTCTCTCTTTCTCTCTATTAGTAAATAATAGCGGGCAGGGGATACAGTTTTTTGTAGCAAGTTCTAATGCAGCTAGTTAAATAGATGGTAATACAATCAGACTAGCGGAGC TAGAATCAAACCATTGGGAACAGATTTCAGCACACAATTTAAAGCTAGTATTTAAATTTAGATGCAACACAGTGTGACATTCCGATAACGATGTGCATTGATATTATTCGTAAGTAAGCGATTAGTAAGGCGGGATCGCTCGCAGGTTCGCAGCATACAGCATTCATGACAGTATTTCGAACGGGTCAGGATTTGGTGTACTAAAGCCCAATGGGAAGTTAAAGGTTTCATGGCGAACCATAGATCCCCAGAACCAGTTTACCGAGCGCGCATTGGGAACATACACGATCGCAACACGAACAA AAAAAAACGGCAACATGTGATAACAGATGCTACAAACCTTCCGGATGAGGCACGATTTCATCGACCTACTTTATTGATAGTTATTTGTAAGATATTTAAGTACTAAGGACATCTGCAGCAGCAAGTATTATTGCAACCTTCACTACCTTTAGGGCAAATAGGTACAGCAAGTATTAGGCAACTCCGGGCTCTGCATAAGGG TATGCA ] [+] EMBL BM594121 [ ccgGTTAAAGGTTTCATGGCGAACCATAGATCCCCAGAACCAGTTTACCGAGCGCGCATTGGGAACATACACGATCGCAACACGAACAA AAAAAAACGGCAACATGTGATAACAGATGCTACAAACCTTCCGGATGAGGCACGATTTCATCGACCTACTTTATTGATAGTTATTTGTAAGATATTTAAGTACTAAGGACATCTGCAGCAGCAAGTATTATTGCAACCTTCACTACCTTTAGGGCAAATAGGTACAGCAAGTATTAGGCAACTCCGGGCTCTGCATAAGGGTTATGCAAGATAGCTAAAGTAAGTGCAATATAACGGTGTTGTTGAACACGTTAGTGTAGTTTCTACCTAGTGCTACTGATATTCAAACCT] consensusID : consensus_6506#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 650 fasta sequence [CCGGCGATTAGTAAGGCGGGATCGCTCGCAGGTTGAGCGTACAGTATTCATGCAGCTAGTTAAATAGATGGTACTACAATCAGACTAGCGGAGCAAGTAGAATCAAACCATTGGGAACAGATTTCAGCACACAATTTAAAGCTAGTATTTAAATTTAGATGCAACACAGTGTGACATTCCGATAACGATGTGCATTGATATTATTCGTAAGTAAGCGATTAGTAAGGCGGGATCGCTCGCAGGTTGAGCGTACAGTATTCATGACAGTATTTCGATCGGGTCAGGATTTGGTGTACTAAAGCCCAATGGGAAGTTAAAGGTTTCATGGCGAACCATAGATCCCCAGAACCAGTTTACCGAGCGCGCATTGGGAACATACACGATCGCAACACGAACAACAAAAAAACGGCAACATGTGATAACAGATGCTACAACCTTCCGGATGAGGCACGATTTCATCGACCTACTTTATTGATAGTTATTTGTAAGATATTTAAGTACTAAGGACATCTGCAGCAGCAAGTATTATTGCAACCTTCACTACCTTTAGGGCAAATAGGTACAGCAAGTATTAGGCAACTCCGGGCTCTGCATAAGGGTTATGCAAGATAGCTAAAGTAAGTGCAATATAACGGTGTTGTTGAACACGT] [+] EMBL BM622883 [CCGGCGATTAGTAAGGCGGGATCGCTCGCAGGTTGAGCGTACAGTATTCATGCAGCTAGTTAAATAGATGGTACTACAATCAGACTAGCGGAGCAAGTAGAATCAAACCATTGGGAACAGATTTCAGCACACAATTTAAAGCTAGTATTTAAATTTAGATGCAACACAGTGTGACATTCCGATAACGATGTGCATTGATATTATTCGTAAGTAAGCGATTAGTAAGGCGGGATCGCTCGCAGGTTGAGCGTACAGTATTCATGACAGTATTTCGATCGGGTCAGGATTTGGTGTACTAAAGCCCAATGGGAAGTTAAAGGTTTCATGGCGAACCATAGATCCCCAGAACCAGTTTACCGAGCGCGCATTGGGAACATACACGATCGCAACACGAACAACAAAAAAACGGCAACATGTGATAACAGATGCTACAACCTTCCGGATGAGGCACGATTTCATCGACCTACTTTATTGATAGTTATTTGTAAGATATTTAAGTACTAAGGACATCTGCAGCAGCAAGTATTATTGCAACCTTCACTACCTTTAGGGCAAATAGGTACAGCAAGTATTAGGCAACTCCGGGCTCTGCATAAGGGTTATGCAAGATAGCTAAAGTAAGTGCAATATAACGGTGTTGTTGAACACGT] consensusID : consensus_6506#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 518 fasta sequence [ACCGACGTTTACCGCCTACCAGTATCCGACCACGATGCGCAACCTTGGCGTTGGGGTGGGAAATTTCGCTGCCGGTGTGGCCCTTATCATCGTACCGTACCTGTGGCTGCTGGAACACGTTGATCAGTACCTGCCGATGACGATCATGGGTGTGTTCAGCATTGTCGGTGCCCTGTCGCTGGCCATCCTAAAGGACAAGCTCAGCCCAAAGTATCGTCAGCGCAGGCAGGCGAAGCAGGCGTCGATCTATCAAAATGCTGCCACCATCAACGGTACGAAGCACCACGCGGCGTTGGAAAACGACGATCCAAAACGGCGCCTGGGTTCACACTTCCCGCACAGCACGGACGATGGGGCCGGCATCAGCAACATCGGATTTGCGCAGAACGAAAGCATCTTTCTGTAAAGCTTTACAGTAAGACATGCTCTCTCTCTCTCCCTCGTTTTCTCTCTCTCTTTCTCTCTATTAGTAAATAATAGCGGGCAGGGGATACAGTTTTTTGTAGCAAGTTCTAATG] [+] EMBL BX623649 [ACCGACGTTTACCGCCTACCAGTATCCGACCACGATGCGCAACCTTGGCGTTGGGGTGGGAAATTTCGCTGCCGGTGTGGCCCTTATCATCGTACCGTACCTGTGGCTGCTGGAACACGTTGATCAGTACCTGCCGATGACGATCATGGGTGTGTTCAGCATTGTCGGTGCCCTGTCGCTGGCCATCCTAAAGGACAAGCTCAGCCCAAAGTATCGTCAGCGCAGGCAGGCGAAGCAGGCGTCGATCTATCAAAATGCTGCCACCATCAACGGTACGAAGCACCACGCGGCGTTGGAAAACGACGATCCAAAACGGCGCCTGGGTTCACACTTCCCGCACAGCACGGACGATGGGGCCGGCATCAGCAACATCGGATTTGCGCAGAACGAAAGCATCTTTCTGTAAAGCTTTACAGTAAGACATGCTCTCTCTCTCTCCCTCGTTTTCTCTCTCTCTTTCTCTCTATTAGTAAATAATAGCGGGCAGGGGATACAGTTTTTTGTAGCAAGTTCTAATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6506#0 CCGGGACAAGCTCAGCCCAAAGTATCGTCAGTGCAGGCAGGCGAAGCAGGCGTCGATCTA 60 consensus_6506#1 ------------------------------------------------------------ consensus_6506#2 ------------------------------------------------------------ consensus_6506#0 TCAAAATGCTGCCACCATCAACGGTACGAAGCACCACGCGGCATCAGCAACATCGGATTT 120 consensus_6506#1 ------------------------------------------------------------ consensus_6506#2 ------------------------------------------------------------ consensus_6506#0 GCGCAGAACGAAAGCATCTTTCTGTAAAGCTTTACAGTGAGACATGCTCTCTCTCCCTCG 180 consensus_6506#1 ------------------------------------------------------------ consensus_6506#2 ------------------------------------------------------------ consensus_6506#0 TTTTCTCTCTCTCTTTCTCTCTATTAGTAAATAATAGCGGGCAGGGGATACAGTTTTCTG 240 consensus_6506#1 -----------------------CCGGCGATTAGTAAGGCGGGATCGCTCGCAGGTTGAG 37 consensus_6506#2 ------------------------------------------------------------ consensus_6506#0 TAGCAAGTTCTAATGCAGCTAGTTAAATAGATGGTACTACAATCAGACTAGCGGAGCAAG 300 consensus_6506#1 CGTACAGTATTCATGCAGCTAGTTAAATAGATGGTACTACAATCAGACTAGCGGAGCAAG 97 consensus_6506#2 -------------------------------------------------------ACCGA 5 * consensus_6506#0 TAGAATCAAACCATTGGGAACAGATTTCAGCACACAAT-TTAAAGCTAGTATTT-AAATT 358 consensus_6506#1 TAGAATCAAACCATTGGGAACAGATTTCAGCACACAAT-TTAAAGCTAGTATTT-AAATT 155 consensus_6506#2 CGTTTACCGCCTACCAGTATCCGACCACGATGCGCAACCTTGGCGTTGGGGTGGGAAATT 65 * * * * * * ** * * *** ** * * * * ***** consensus_6506#0 TAGATGCAACACAGTGTGACATTCCGATAACGATGTGCATTGATATTATTCGTAAGTAAG 418 consensus_6506#1 TAGATGCAACACAGTGTGACATTCCGATAACGATGTGCATTGATATTATTCGTAAGTAAG 215 consensus_6506#2 TCGCTGC----CGGTGTGGC-CCTTATCATCGTACCGTACCTGTGGCTGCTGGAACACGT 120 * * *** * ***** * * ** * * * * ** consensus_6506#0 CGATTAGTAA--GGCGGGATCGCTCGCAGGTTGAGCGTACAGTATTCATGACAGTATTTC 476 consensus_6506#1 CGATTAGTAA--GGCGGGATCGCTCGCAGGTTGAGCGTACAGTATTCATGACAGTATTTC 273 consensus_6506#2 TGATCAGTACCTGCCGATGACGATCATGGGT---GTGTTCAGCATTGTCGGTGCCCTGTC 177 *** **** * ** ** ** *** * ** *** *** * * ** consensus_6506#0 GATCGGGTCAGGATTTGGTGTACTAAAGCCCAATGGGAAGTTAAAGGTTTCATGGCGAAC 536 consensus_6506#1 GATCGGGTCAGGATTTGGTGTACTAAAGCCCAATGGGAAGTTAAAGGTTTCATGGCGAAC 333 consensus_6506#2 GCTGGCCATCCTAAAGGACAAGCTCA-GCCCAAAGTATCGTCAGCGCAGGCA-GGCGAAG 235 * * * * * ** * ****** * ** * * ** ****** consensus_6506#0 CATAGATCCCCAGAACCAGTTTACCGAGCGCGCATTGGGAACATACACGATCGCAACACG 596 consensus_6506#1 CATAGATCCCCAGAACCAGTTTACCGAGCGCGCATTGGGAACATACACGATCGCAACACG 393 consensus_6506#2 CAGGCGTC----GATCTA--TCAAAATGCTGCCACCATCAACG-GTACGAA-GCACCACG 287 ** ** ** * * * * ** ** *** **** *** **** consensus_6506#0 AACAA-AAAAAAACGGCAACATGTGATAACAGATGCTACAAACCTTCCGGATGAGGCACG 655 consensus_6506#1 AACAACAAAAAAACGGCAACATGTGATAACAGATGCTACAA-CCTTCCGGATGAGGCACG 452 consensus_6506#2 CGGCGTTGGAAAACGACGATCCAAAACGGCGCCTGGGTTCACACTTCCCG-CACAGCACG 346 ****** * * * * ** * ***** * ***** consensus_6506#0 ATTTCATCGACCTACTTTATTGATAGTT-ATTTGTAAGATATTTAAGTA-----CTAAGG 709 consensus_6506#1 ATTTCATCGACCTACTTTATTGATAGTT-ATTTGTAAGATATTTAAGTA-----CTAAGG 506 consensus_6506#2 GACGATGGGGCCGGCATCAGCAACATCGGATTTGCGCAGAACGAAAGCATCTTTCTGTAA 406 * ** * * * * * ***** * *** * ** consensus_6506#0 ACATCTGCAGCAGCAAGTATTATTGCAACCTTCACTACCTTTAGGGCAAATAGGTACAGC 769 consensus_6506#1 ACATCTGCAGCAGCAAGTATTATTGCAACCTTCACTACCTTTAGGGCAAATAGGTACAGC 566 consensus_6506#2 AGCTTTACAGTAAGACATGCTCTCTCTCTCTCCCTCGTTTTCTCTCTCTCTTTCTCT--C 464 * * * *** * * * * * * ** * ** * * * consensus_6506#0 AAGTATTAGGCAACTCCGGGCTCTGCATAAGGGT-ATGCAAGATAGCTAAAGTAAGTGCA 828 consensus_6506#1 AAGTATTAGGCAACTCCGGGCTCTGCATAAGGGTTATGCAAGATAGCTAAAGTAAGTGCA 626 consensus_6506#2 TATTAGTAAATAATAGCGGGCAGGGGATACAGTTTTTTGTAGCAAGTTCTAATG------ 518 * ** ** ** ***** * *** * * * ** ** * * * consensus_6506#0 ATATAACGGTGTTGTTGAACACGTTAGTGTAGTTTCTACCTAGTGCTACTGATATTCAAA 888 consensus_6506#1 ATATAACGGTGTTGTTGAACACGT------------------------------------ 650 consensus_6506#2 ------------------------------------------------------------ consensus_6506#0 CCT 891 consensus_6506#1 --- consensus_6506#2 --- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||