These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6508#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1010 fasta sequence [GGGCAAGGCTCATGCCGGGGCGTGGAACTTCGACCGGGCCCGGGCCGACTTCGAGCGGGCGGCCGAGCTGGACTCGGGCCTGCAAACCGCCGTCGGCAAAGAGCTGGCCAAGCTGCAGGAGCAGCAGCGGCTGCGGGACGTCGAGGACCGGCTCAAGTATCAGAAGCTTTTTTAGTTCTTTTTTTGTTTTTTTTTAGGGAAAGGAGAGAGGTTTTTCTTTTGGGGATTTTTGTGTTTGTTTCCAGGTACTGGATGCGATTTAAGGTTTAGAGTGCATTCCTTGCAGGGAGGGTCAACCTCGATAGGTCGGAGGCATTACGTGCAAAAGCCCCTCAAGTGTTTTGTTTGTTACTTCAGTTTTTGAGTATTTTTTACACGTTTTCCTCCGCTTTCCCGGTTAGTTTAGGAACTGTGGTTCCATTCTCTACTAACATTTAGCCTCACTGGCTGGCAATCGAATGCGCCTTTTCTACGTAGAGCTTTTTAAATGTGTCTGTGTAATTGTTTGATTTGTTTAGATTAAATCTTCGCTTCCTCTTGCTTATGAAAAGCGTACGGGCATACTTGGAGTGGAAAATGAAGTCACAAACAAAAAAACATTTATTTCCCACAAAAAAGTCAAACATGTTCAAACACAGTTTTGGGTGTTGCACAGTTCCGGTTGAGGTGTCACGCGGTCGTCTTTAGGTTAAGGCACCGTAGACTTAAGCGTCAATATCATATTTAGTAGCTGTATGCACACAGTATGCTTATTACTCACACCACTCAGTGTCTTTCTCAGCTCGGTGTTGGTAGTTTCCAAAGGGTACTTTTTTGTCTACTCGCTCGATGTACATTTCCAAGAAGAATATCCTTTTCCTCCCAAATTGTTAGATAGGTAATTGTGCCATTAGCAAAACAAAAACTCAGTAAACTGCTAGGATGTATGGAGAGTATGAGAGTAATCAATCGGCAACCAAAATCAGAGTTTCACGCCGCAAAAAAAAACACGAGTCAAAATANGTAATCTA] [+] EMBL BX611245 [GGGCAAGGCTCATGCCGGGGCGTGGAACTTCGACCGGGCCCGGGCCGACTTCGAGCGGGCGGCCGAGCTGGACTCGGGCCTGCAAACCGCCGTCGGCAAAGAGCTGGCCAAGCTGCAGGAGCAGCAGCGGCTGCGGGACGTCGAGGACCGGCTCAAGTATCAGAAGCTTTTTTAGTTCTTTTTTTGTTTTTTTTTAGGGAAAGGAGAGAGGTTTTTCTTTTGGGGATTTTTGTGTTTGTTTCCAGGTACTGGATGCGATTTAAGGTTTAGAGTGCATTCCTTGCAGGGAGGGTCAACCTCGATAGGTCGGAGGCATTACGTGCAAAAGCCCCTCAAGTGTTTTGTTTGTTACTTCAGTTTTTGAGTATTTTTTACACGTTTTCCTCCGCTTTCCCGGTTAGTTTAGGAACTGTGGTTCCATTCTCTACTAACATTTAGCCTCACTGGCTGGCAATCGAATGCGCCTTTTCTACGTAGAGCTTTTTAAATGTGTCTGTGTAATTGTTTGATTTGTTTAGATTAAATCTTCGCTTCCTCTTGCTTATGAAAAGCGTACGGGCA ] [+] EMBL BM617091 [ ccgCGGAGGCATTACGTGCAAAAGCCCCTCAAGTGTTTTGTTTGTTACCTCAGTTTTTGAGTATTTTTTACACGTTTTCCTCCGCTTTCCCGGTTAGTTTAGGAACTGTGGTTCCATTCTCTACTAACATTTAGCCTCACTGGCTGGCAATCGAATGCGCCTTTTCTACGTAGAGCTTTTTAAATGTGTCTGTGTAAATGTTTGATTTGTTTAGATTAAATCTTCGCTTCCTCTTGCTTATGAAAAGCGTACGGACATACTTGGAGTGGAAAATGAAGTCACAAACAAAAAAACATTTATTTCCCACAAAAAAGTCAAACATGTTCAAACACAGTTTTGGGTGTTGCACAGTTCCGGTTGAGGTGTCACGCGGTCGTCTTTAGGTTAAGGCACCGTAGACTTAAGCGTCAATATCATATTTAGTAGCTGTATGCACACAGTATGCTTATTACTCACACCACTCAGTGTCTTTCTCAGCTCGGTGTTGGTAGTTTCCAAAGGGTACTTTTTTGTCTACTCGCTCGATGTACATTTCCAAGAAGAATATCCTTTTCCTCCCAAATTGTTAGATAGGTAATTGTGCCATTAGCAAAACAAAAACTCAGTA ] [-] EMBL BX626430 [ TTTTTGAGTATTTTTTACACGTTTTCCTCCGCTTTCCCGGTTAGTTTAGGAACTGTGGTTCCATTCTCTACTAACATTTAGCCTCACTGGCTGGCAATCGAATGCGCCTTTTCTACGTAGAGCTTTTTAAATGTGTCTGTGTAATTGTTTGATTTGTTTAGATTAAATCTTCGCTTCCTCTTGCTTATGAAAAGCGTACGGGCATACTTGGAGTGGAAAATGAAGTCACAAACAAAAAAACATTTATTTCCCACAAAAAAGTCAAGCATGTTCAAACACAGTTTTGGGTGTTGCACGGTTCCGGTTGAGGTGTCACGCGGTCGTCTTTAGGTTAAGGCACCGTAGACTTAAGCGTCAATATCATATTTAGTAGCTGTATGCACACAGTATGCTTATTACTCACACCACTCAGTGTCTTTCTCAGCTCGGTGTTGGTAGTTTCCAAAGGGTACTTTTTTGTCTACTCGCTGGATGTACATTTCCAAGAAGAATTTCCTTTTCCTCCCAAATTGTTAGATAGGTAATTGTGCCATTAGCAAAACAAAAACTCAGTAAACTGCTAGGATGTATGGAGAGTATGAGAGTAATCAATCGGCAACCAAAATCAGAGTTTCACGCCGCAAAAAAAAACACGAGTCAAAATANGTAATCTA] consensusID : consensus_6508#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 683 fasta sequence [CCGACCTCCCATCCCACCGCCCATCAAAATATTTGTTGTGATGGATTCCACCTTGCAGGAGCCAAAAATTGTGAAAAACATTGTGCATGCGGGCACCAAGGTCGTCCCGTTTCGGGACGGTACGAAGGTAAAGTTTCACTATCAGACGCGAAAATGTGACGAGGCGCGGACGCTGATCGACGACAGCCGGGCGCACGGCCAGAAACCGATGGAGCTGGTGCTCGGCAAGAAGTTTAAGCTCGAGGTGTGGGAATCGATCGTGCAGCAGATGGCCCTGCACGAGGTGGCCCGGTTCCGGTGCGACCGGTCGCTCGTCCAGCAGTACCCGTTCGTGTCGAAGACGATCCGGGACGCGCAGAAGCCGCGCGAGGAGCGCAAGCACTGCTGCGGCATGACGGTGCAGAACGAGGGCATCGGCTACCGGGACCTGGACGAGCTGTTCACCCACCCGCAGGACCTGGAGTTCACGATCGAGATCCTGTCGATCGAGAGCCCGGACGAGTACGAGAAGGAATCGTGGCAGCTGAGCGACGACGAGAAGCGGGCACTGGTTGGTCGGCTGCGCGAGCAGGGCAATGCCGCGTACCGGGCGAACGATCTGACCGCGGCCCGGGACGCTTACTCGTACGCGACCGGCATCATCGAGCAGCTGATGCTCAAGGAAAAACCCGACGAACCGGAAT] [+] EMBL BM608575 [CCGACCTCCCATCCCACCGCCCATCAAAATATTTGTTGTGATGGATTCCACCTTGCAGGAGCCAAAAATTGTGAAAAACATTGTGCATGCGGGCACCAAGGTCGTCCCGTTTCGGGACGGTACGAAGGTAAAGTTTCACTATCAGACGCGAAAATGTGACGAGGCGCGGACGCTGATCGACGACAGCCGGGCGCACGGCCAGAAACCGATGGAGCTGGTGCTCGGCAAGAAGTTTAAGCTCGAGGTGTGGGAATCGATCGTGCAGCAGATGGCCCTGCACGAGGTGGCCCGGTTCCGGTGCGACCGGTCGCTCGTCCAGCAGTACCCGTTCGTGTCGAAGACGATCCGGGACGCGCAGAAGCCGCGCGAGGAGCGCAAGCACTGCTGCGGCATGACGGTGCAGAACGAGGGCATCGGCTACCGGGACCTGGACGAGCTGTTCACCCACCCGCAGGACCTGGAGTTCACGATCGAGATCCTGTCGATCGAGAGCCCGGACGAGTACGAGAAGGAATCGTGGCAGCTGAGCGACGACGAGAAGCGGGCACTGGTTGGTCGGCTGCGCGAGCAGGGCAATGCCGCGTACCGGGCGAACGATCTGACCGCGGCCCGGGACGCTTACTCGTACGCGACCGGCATCATCGAGCAGCTGATGCTCAAGGAAAAACCCGACGAACCGGAAT] consensusID : consensus_6508#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 570 fasta sequence [AGAATNGCCCGAGGCTCTGAGCAGTGCAATGCCTGCTGTACTGGGCTGAACGATCTGACCTGCGGCCCGGGACGCTTACTCGTACGCGACCTGGCATCATCGAGCAGCTGATGCTCAAGGAAAAACCCGACNGAACCGGAATGGATCTGAGCTGGCCCAGATGAATGTGTGCCTGCTGCTGCTGAACTACTCNGCAGGTGCAATGCTGCTCGAGCTGGGACTACTACGCCGCTGATCTGAGCACTGCACCTGAGTGCTGCTCAAGTACTGATCCTGCACTGCGTGAAGTGCACTGTTCCTGGCTGNGGTGCAATGGCTCATGCCTGGGGCTGTGGAACTTCGACCTGGGCCCTGTGGCCTGACTTCGAGCTGGGCTGTGCCTGAGCTGGACTCGGGCCTGCAAACCTGCCGTCGGCAAAGAGCTGGCCAAGCTGCAGTGAGCAGCAGCTGGCTGCGGGACGTCGAGGACCTGGCTCAAGTATCAGAAGCTTTTTTAGTTCTTTTTTGTTTATTTTATNAGGGAAAGGAGAGAGGTTTATTCTTTTGGGGATTTTTGGTGTAGTAATCCAG] [+] EMBL AL931303 [AGAATNGCCCGAGGCTCTGAGCAGTGCAATGCCTGCTGTACTGGGCTGAACGATCTGACCTGCGGCCCGGGACGCTTACTCGTACGCGACCTGGCATCATCGAGCAGCTGATGCTCAAGGAAAAACCCGACNGAACCGGAATGGATCTGAGCTGGCCCAGATGAATGTGTGCCTGCTGCTGCTGAACTACTCNGCAGGTGCAATGCTGCTCGAGCTGGGACTACTACGCCGCTGATCTGAGCACTGCACCTGAGTGCTGCTCAAGTACTGATCCTGCACTGCGTGAAGTGCACTGTTCCTGGCTGNGGTGCAATGGCTCATGCCTGGGGCTGTGGAACTTCGACCTGGGCCCTGTGGCCTGACTTCGAGCTGGGCTGTGCCTGAGCTGGACTCGGGCCTGCAAACCTGCCGTCGGCAAAGAGCTGGCCAAGCTGCAGTGAGCAGCAGCTGGCTGCGGGACGTCGAGGACCTGGCTCAAGTATCAGAAGCTTTTTTAGTTCTTTTTTGTTTATTTTATNAGGGAAAGGAGAGAGGTTTATTCTTTTGGGGATTTTTGGTGTAGTAATCCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6508#0 -----------------------------------------------------GGGCAAG 7 consensus_6508#2 ------------------------------------------------------AGAATN 6 consensus_6508#1 CCGACCTCCCATCCCACCGCCCATCAAAATATTTGTTGTGATGGATTCCACCTTGCAGGA 60 consensus_6508#0 GCTCATG---CCGGGGCGTGGAACTTCGACCG-GGCCCGGGCCGAC----TTCGAGCGGG 59 consensus_6508#2 GCCCGAGGCTCTGAGCAGTGCAATGCCTGCTG-TACTGGGCTGAACGA--TCTGACCTGC 63 consensus_6508#1 GCCAAAAATTGTGAAAAACATTGTGCATGCGGGCACCAAGGTCGTCCCGTTTCGGGACGG 120 ** * * * * * * * * * consensus_6508#0 CGGCCGAGCTGGACTCGGGCCTGCAAACCGCCGTCGG--CAAAGAGCTGGCCAAGCTGCA 117 consensus_6508#2 GGCCCGGGACGCTTACTCGTACGCGACCTGGCATCAT--CGAGCAGCTG---ATGCTCAA 118 consensus_6508#1 TACGAAGGTAAAGTTTCACTATCAGACGCGAAAATGTGACGAGGCGCGGACGCTGATCGA 180 * * * * * ** * * * * consensus_6508#0 GGAGCAGCAGCGGCTGCGGGACGTCGAGGACCGGCTCAAGTATCAG--AAGCTTTTTTAG 175 consensus_6508#2 GGAAAAACC-CGACNG--AACCGGAATGGATCTGAGCTGGC-CCAG--ATGAATGTGTGC 172 consensus_6508#1 CGACAGCCG--GGCGCACGGCCAGAAACCGATGGAGCTGGTGCTCGGCAAGAAGTTTAAG 238 ** * * * * * * * * * * * consensus_6508#0 TTCTTTTTTTGTTTTTTTTTAGGGAAAGGAGAGAGGTTTTTCTTTTGGGGATTTTTGTGT 235 consensus_6508#2 CTGCTGCTGCTGAACTACTCNG---CAGGTGCAATGCTGCTCGAGCTGGGACTACTACGC 229 consensus_6508#1 CTCGAGGTGTGGGAATCGATCGTGCAGCAGATGGCCCTGCACGAGGTGGCCCGGTTCCGG 298 * * * * * * ** * * consensus_6508#0 TTGTT-TCCAGGTACTGGATGCGATTTAAGGTTTAGAGTGCATTCCTTGCAGGGAGGGTC 294 consensus_6508#2 CGCTGATCTGAGCACTGCACCTGAGTGCTGCTCAAGTACTGATCCTGCACTGCGTGAAGT 289 consensus_6508#1 TGCGA--CCGGTCGCTCGTCCAGCAGTACCCGTTCGTGTCGAA--GACGATCCGGGACGC 354 * ** * * * * * consensus_6508#0 AACCTCGATAGGTCGGAGGCATTACGTGCAAAAGCCCCTCAAGTGTTTTGTTTGTTACTT 354 consensus_6508#2 GCACTGTTCCTGGCTGNGGTGCAATG-GCTCATGCCT---GGGGCTGTGGAACTTCGACC 345 consensus_6508#1 GCAGAAGCCGCGCGAGGAGCGCAA-GCACTGCTGCGGCATGACGGTGCAGAACGAGGGCA 413 * * * * * * ** * * consensus_6508#0 CAGTTT-TTGAGTATTTTTTACACGTTTTCCTCCGCTTTCCCGGTTAGT-TTAGGAACTG 412 consensus_6508#2 TGGGCC-CTGTGGCCTGACTTCGAGCTGGGCTGTGC---CTGAGCTGGA-CTCGGGCCTG 400 consensus_6508#1 TCGGCTACCGGGACCTGGACGAGCTGTTCACCCACCCGCAGGACCTGGAGTTCACGATCG 473 * * * * * * * * * * * consensus_6508#0 TGGTTCCATTCTCTACTAACATTTAGCCTCACTGGCTGGCAATCGAATGCGCCTTTTCTA 472 consensus_6508#2 CAAACCTGCCGTCGGCAAAGAGCTGGCCAAGCTG-CAGTGAGCAGCAGCTGGCTGCGGGA 459 consensus_6508#1 AGATCCTGTCGATCG-AGAGCCCGGACGAGTACGAGAAGGAATCGTGGC-AGCTGAGCGA 531 * * * * * * ** * consensus_6508#0 CGTAGAGCTTTTTAAATGTGTCTGTGTAATTGTTTGATTTGTTTAG-ATTAAATCTTCGC 531 consensus_6508#2 CGTCGAGGACCTGGCTCAAGTATCAGAAGCTTTTTTAGTTCTTT-----------TTTGT 508 consensus_6508#1 CGACGAGAAGCGGGCACTGGT-TGGTCGGCTGCGCGAGCAGGGCAATGCCGCGTACCGGG 590 ** *** ** * * * * consensus_6508#0 TTCCTCTTGCTTATGAAAAGCGTACGGGC-ATACTTGGAGTGGAA-AATGAAGTCACAAA 589 consensus_6508#2 TTATT-TTATNAGGGAAAGGAGAGAGGTTTATTCTTTTGGGGATT-TTTGGTGTAGTAAT 566 consensus_6508#1 CGAACGATCTGACCGCGGCCCGGGACGCTTACTCGTACGCGACCGGCATCATCGAGCAGC 650 * * * * * * * * * consensus_6508#0 CAAAAAAACATTTATTTCCCACAAAAAAGTCAAACATGTTCAAACACAGTTTTGGGTGTT 649 consensus_6508#2 CCAG-------------------------------------------------------- 570 consensus_6508#1 TGATGCTCAAGGAAAAACCCGACGAACCGGAAT--------------------------- 683 * consensus_6508#0 GCACAGTTCCGGTTGAGGTGTCACGCGGTCGTCTTTAGGTTAAGGCACCGTAGACTTAAG 709 consensus_6508#2 ------------------------------------------------------------ consensus_6508#1 ------------------------------------------------------------ consensus_6508#0 CGTCAATATCATATTTAGTAGCTGTATGCACACAGTATGCTTATTACTCACACCACTCAG 769 consensus_6508#2 ------------------------------------------------------------ consensus_6508#1 ------------------------------------------------------------ consensus_6508#0 TGTCTTTCTCAGCTCGGTGTTGGTAGTTTCCAAAGGGTACTTTTTTGTCTACTCGCTCGA 829 consensus_6508#2 ------------------------------------------------------------ consensus_6508#1 ------------------------------------------------------------ consensus_6508#0 TGTACATTTCCAAGAAGAATATCCTTTTCCTCCCAAATTGTTAGATAGGTAATTGTGCCA 889 consensus_6508#2 ------------------------------------------------------------ consensus_6508#1 ------------------------------------------------------------ consensus_6508#0 TTAGCAAAACAAAAACTCAGTAAACTGCTAGGATGTATGGAGAGTATGAGAGTAATCAAT 949 consensus_6508#2 ------------------------------------------------------------ consensus_6508#1 ------------------------------------------------------------ consensus_6508#0 CGGCAACCAAAATCAGAGTTTCACGCCGCAAAAAAAAACACGAGTCAAAATANGTAATCT 1009 consensus_6508#2 ------------------------------------------------------------ consensus_6508#1 ------------------------------------------------------------ consensus_6508#0 A 1010 consensus_6508#2 - consensus_6508#1 - |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||