These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6509#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 800 fasta sequence [CAAGAATCGCCCGAGGTTCGGTACAAGCATAAGGTGGCTCCAATTCATACCGAGATTAGCACCAAGATCGAAAATGCACGCATGAAAATAAGTGAATCTACCGGCAACCTCCCAACAATCGCGAACGAAAGCGGCAACAACGATAGGCGACGCTCTGTTAGAGATATTATCGAGTCAATCAATAAGAGCCAGAGCATGCTCAAGGTTAACCACGATCAGTCGACCAATGGTTTGCACGAAACACAGTCGACTGACAGCATGGCACGAAACATACGGGAGCTCAATGAACGCGAAAGGGAAATTCAGAACTTGCTGCAAGATATCGACACACGCTATGGGACGCATAGTGCTAAAGGTGATAGTACGCTCAGCGAAGTCGCTACCGCCAGCGAACTTCCAATGCTGTCCGACGGTCGAGGATCGTACTATGATAACTTAACGGATGATAATCTTAATGATAACTTGGACGACAAAAATAACGCTGCTTCGGGCTTCCGCGTTAAGAAAAGTCCCACCAAAACGGTGCTCATTGCGGAGGGTGGTGACGACCAACAGTTTCAAGA-TGTATCAATTGGAACCCGCTA-CGAAACCGAGACGTAGCCATATCTTCGACCGTGAAAAATGGAGCAAGATTCCCAGACAGGAAGCCANACNGATCATCTAACTCCACCATCCTGAATGTGCCATTACAACTAGTTGTTTACCTATNTGTGCAGATGGTTGTACTAATCAACATAGCAAATACTGCGTGATCTGNACTCTAACGGACACACAACTNANCANTAANNCACAATGTTNCA] [+] EMBL AL931252 [CAAGAATCGCCCGAGGTTCGGTACAAGCATAAGGTGGCTCCAATTCATACCGAGATTAGCACCAAGATCGAAAATGCACGCATGAAAATAAGTGAATCTACCGGCAACCTCCCAACAATCGCGAACGAAAGCGGCAACAACGATAGGCGACGCTCTGTTAGAGATATTATCGAGTCAATCAATAAGAGCCAGAGCATGCTCAAGGTTAACCACGATCAGTCGACCAATGGTTTGCACGAAACACAGTCGACTGACAGCATGGCACGAAACATACGGGAGCTCAATGAACGCGAAAGGGAAATTCAGAACTTGCTGCAAGATATCGACACACGCTATGGGACGCATAGTGCTAAAGGTGATAGTACGCTCAGCGAAGTCGCTACCGCCAGCGAACTTCCAATGCTGTCCGACGGTCGAGGATCGTACTATGATAACTTAACGGATGATAATCTTAATGATAACTTGGACGACAAAAATAACGCTGCTTCGGGCTTCCGCGTTAAGAAAAGTCCCACCAAAACGGTGCTCATTGCGGAGGGTGGTGACGACCAACAGTTTCAAGA TGTATCAATTGGAACCCGCTA CGAAACCGAGACGTAGCCATATCTTCGACCGTGAAAAATGGAGCAAGATTCCCAGACAGGAAGCCANACNGATCATCTAACTCCACCATCCTGAATGTGCCATTACAACTAGTTGTTTACCTATNTGTGCAGATGGTTGTACTAATCAACATAGCAAATACTGCGTGATCTGNACTCTAACGGACACACAACTNANCANTAANNCACAATGTTNCA] [+] EMBL BX628462 [ TTCATACCGAGATTAGCACCAAGATCGAAAATGCACGCATGAAAATAAGTGAATCTACCGGCAACCTCCCAACAATCGCGAACGAAAGCGGCAACAACGATAGGCGACGCTCTGTTAGAGATATTATCGAGTCAATCAATAAGAGCCAGAGCATGCTCAAGGTTAACCACGATCAGTCGACCAATGGTTTGCACG AACACAGTCGACTGACAGCATGGCACGAAACATACGGGAGCTCAATGAACGCGAAAGGGAAATTCAGAACTTGCTGCAAGATATCGACACACGCTATGGGACGCATAGTGCTAAAGGTGATAGTACGCTCAGCGAAGTCGCTACCGCCAGCGAACTTCCAATGCTGTCCGACGGTCGAGGATCGTACTATGATAACTTAACGGATGATAATCTTAATGATAACTTGGACGACAAAAATAACGCTGCTTCGGGCTTCCGCGTTAAGAAAAGTCCCACCAAAACGGTGCTCATTGCGGAGGGTGGTGACGACCAACAGTTTCAAGATTGTATCAATTGGAACCCGCTACCGAAACCGAGACGTAGCCATAT TTTGAC GGAAAATGGAGC AGATTCCCAG CAGGAAG CA AC GAT ATCTAA TCCACCATCCTGAt ] consensusID : consensus_6509#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 599 fasta sequence [CCGCCGAAAGCAGCCCTCCCATCAACCACCGAGGAGGGAGATGACGATGAAGGTCCAACAACCACGATCATAGTGGATAACTTGCGGTACAAGCACAAGGTGGCTCCAATTCATACCGAGATTAGCACCAAGATCGAAAATGCACGCATGAAAATAAGTGAATCTACCGGCAACCTCCCAACGATCGCAAACGAAAGCGGCAACAACGATAGGCGCCGCTCTGTTAGAGATATTATCGAGTCAATCAATAAGAGCCAGAGCATGCTCAAGGTTAACCACGATCAGTCGACCAATGGTTTGCACGAAACACAGTCGACTGACAGCATGGCACGAAACATACGGGAGCTCAATGAACGCGAAAGGGAAATTCAGAACTTGCTGCAAGATATCGACACACGCTATGGGACGCATAGTGCTAAAGGTGATAGTACGCTCAGCGAAGTCGCTACCGCCAGCGAACTTCCAATGCTGTCCGACGGTCGAGGATCGTACTATGATAACTTAACGGATGATAATCTTAATGATAACTTGGACGACAAAAATAACGCTGCTTCGGGGTTCCGCGTTAAGAAAAGTCCCACCAAAACGGTGCTCATTGC] [+] EMBL BM580285 [CCGCCGAAAGCAGCCCTCCCATCAACCACCGAGGAGGGAGATGACGATGAAGGTCCAACAACCACGATCATAGTGGATAACTTGCGGTACAAGCACAAGGTGGCTCCAATTCATACCGAGATTAGCACCAAGATCGAAAATGCACGCATGAAAATAAGTGAATCTACCGGCAACCTCCCAACGATCGCAAACGAAAGCGGCAACAACGATAGGCGCCGCTCTGTTAGAGATATTATCGAGTCAATCAATAAGAGCCAGAGCATGCTCAAGGTTAACCACGATCAGTCGACCAATGGTTTGCACGAAACACAGTCGACTGACAGCATGGCACGAAACATACGGGAGCTCAATGAACGCGAAAGGGAAATTCAGAACTTGCTGCAAGATATCGACACACGCTATGGGACGCATAGTGCTAAAGGTGATAGTACGCTCAGCGAAGTCGCTACCGCCAGCGAACTTCCAATGCTGTCCGACGGTCGAGGATCGTACTATGATAACTTAACGGATGATAATCTTAATGATAACTTGGACGACAAAAATAACGCTGCTTCGGGGTTCCGCGTTAAGAAAAGTCCCACCAAAACGGTGCTCATTGC] [+] EMBL BM643701 [ GAGACGACGATGAAGGTCCAACAACCACGATCATAGTGGATAACTTGCGGTACAAGCATAAGGTGGCTCCAATTCATACCGAGATTAGCACCAAGATCGAAAATGCACGCATGAAAATAAGTGAATCTACCGGCAACCTCCCAACGATCGCGAACGAAAGCGGCAACAACGATAGGCGCCGCTCTGTTAGAGATA ] consensusID : consensus_6509#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 136 fasta sequence [ACCCGCTACCGAAACCGAGACGTAGCCATATTTTGACGGAAAATGGAGCAGAATCCCAGCAGGAAGCAACGATATCTAATCCACCATCCTGATGTGCCTTCAACTAGTTGTTTACCTATTTGGTCGATGTTGTACT] [+] EMBL BX612556 [ACCCGCTACCGAAACCGAGACGTAGCCATATTTTGACGGAAAATGGAGCAGAATCCCAGCAGGAAGCAACGATATCTAATCCACCATCCTGATGTGCCTTCAACTAGTTGTTTACCTATTTGGTCGATGTTGTACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6509#0 CAAGAATCGCCCGAGGTTCGGTACAAGCATAAGGTGGCTCCAATTCATACCGAGATTAGC 60 consensus_6509#2 ------------------------------------------------------------ consensus_6509#1 ------------------------------------------------------------ consensus_6509#0 ACCAAGATCGAAAATGCACGCATGAAAATAAGTGAATCTACCGGCAACCTCCCAACAATC 120 consensus_6509#2 ------------------------------------------------------------ consensus_6509#1 ------------------------------------------------------------ consensus_6509#0 GCGAACGAAAGCGGCAACAACGATAGGCGACGCTCTGTTAGAGATATTATCGAGTCAATC 180 consensus_6509#2 ------------------------------------------------------------ consensus_6509#1 ------------------------------------------------------------ consensus_6509#0 AATAAGAGCCAGAGCATGCTCAAGGTTAACCACGATCAGTCGACCAATGGTTTGCACGAA 240 consensus_6509#2 ------------------------------------------------------------ consensus_6509#1 -----------------------CCGCCGAAAGCAGCCCTCCCATCAACCACCGAGGAGG 37 consensus_6509#0 ACACAGTCGACTGACAGCATGGCACGAAACATACGGGAGCTCAATGAACGCGAAAGGGAA 300 consensus_6509#2 ------------------------------------------------------------ consensus_6509#1 GAGATGACGATGAAGGTCCAACAACCACGATCATAGTGGATAACTTGCGGTACAAGCACA 97 consensus_6509#0 ATTCAGAACTTGCTGCAAGATATCGACACACGCTATGGGACGCATAGTGCTAAAGGTGAT 360 consensus_6509#2 ------------------------------------------------------------ consensus_6509#1 AGGTGGCTCCAATTCATACCGAGATTAGCACCAAGATCGAAAATGCACGCATGAAAATAA 157 consensus_6509#0 AGTACGCTCAGCGAAGTCGCTACCGCCAGCGAACTTCCAATGCTGTCCGACGGTCGAGGA 420 consensus_6509#2 ------------------------------------------------------------ consensus_6509#1 GTGAATCTACCGGCAACCTCCCAACGATCGCAAACGAAAGCGGCAACAACGATAGGCGCC 217 consensus_6509#0 TCGTACTATGATAACTTAACGGATGATAATCTTAATGATAACTTGGACGACAAAAATAAC 480 consensus_6509#2 ------------------------------------------------------------ consensus_6509#1 GCTCTGTTAGAGATATTATCGAGTCAATCAATAAGAGCCAGAGCATGCTCAAGGTTAACC 277 consensus_6509#0 GCTGCTTCGGGCTTCCGCGTTAAGAAAAGTCCCACCAAAACGGTGCTCATTGCGGAGGGT 540 consensus_6509#2 ------------------------------------------------------------ consensus_6509#1 ACGATCAGTCGACCAATGGTTTGCACGAAACACAGTCGACTGACAGCATGGCACGAAACA 337 consensus_6509#0 GGTGACGACCAACAGTTTCAAGATGTATCAATTGGAACCCGCTAC--GAAACCGAGACGT 598 consensus_6509#2 ------------------------------------ACCCGCTACC-GAAACCGAGACGT 23 consensus_6509#1 TACGGGAGCTCAATGAACGCGAAAGGGAAATTCAGAACTTGCTGCAAGATATCGACACAC 397 ** *** * ** * *** ** consensus_6509#0 AGCCATATCTTCGACCGTGAAAAATGGAGCAAGATTC----CCAGACAGGAAGCCANACN 654 consensus_6509#2 AGCCATATTTT-GAC---GGAAAATGGAGCAGAATCC----C--AGCAGGAAGCAACGAT 73 consensus_6509#1 -GCTATGGGACGCATAGTGCTAAAGGTGATAGTACGCTCAGCGAAGTCGCTACCGCCAGC 456 ** ** * * *** * * * * * * * * consensus_6509#0 GATCATCTAAC----TCCACCATCCT--GAATGTGCCATTACAACTAGTTGTTTACCTAT 708 consensus_6509#2 ----ATCTAA-----TCCACCATCCT--GA-TGTGCCTT--CAACTAGTTGTTTACCTAT 119 consensus_6509#1 GAACTTCCAATGCTGTCCGACGGTCGAGGATCGTACTATGATAACTTAACGGATGATAAT 516 ** ** *** * * ** ** * * **** * * ** consensus_6509#0 NTGTGCAGATGGTTGTACTAATCAACATAGCAAATACTGCGTGATCTGNACTCTAACGGA 768 consensus_6509#2 TTG-GTCGATG-TTGTACT----------------------------------------- 136 consensus_6509#1 CTTAATGATAACTTGGACGACAAAAATAACGCTGCTTCGGGGTTCCGCGTTAAGAAAAGT 576 * *** ** consensus_6509#0 CACACAACTNANCANTAANNCACAATGTTNCA 800 consensus_6509#2 -------------------------------- consensus_6509#1 CCCACCAAAACGGTGCTCATTGC--------- 599 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||