These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6513#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1001 fasta sequence [GCAGATTCCCGCNGGTTATATGCAAAACAATGCAAAACAAGAACGAAAATGTAAAACACAGCGAAACAAAACAAATTCCTAGATACAATGTGAAAACGAGTTTGTTGACAAACCGAAACTGATTGCAAACTGATTTTTAACATATCCGCAACACTTCACATCATCCGTGCCATCAGGAGTAGTAGTAACAAGGGTGACACACAGTGCACAACAGCACACAAGGCCAAAACAGAACGCAACACCGAANACCGGCACATGCAANACCAACACAAAAACCACACATTGCAGCACATGGCACTCAAATNGGAGCANAACATTAAGGTCAAAATAGCCATCTGGAGGCATTNGCATTGCATCCGGTNTCTATCCCTNATATNTAGTAACGTCAATCNGCATTGCACACAGGCATGAAAAGGAAATTGGAATTGGAATTCCATATCCAGGCTAGTCAAGCCCCCACCAACCAAACNAACAAACAAANGGACGCACAAAGCGGGAAACCCANAGCGGCCAAAAACCAACACAAGTGGCCCTAGGTCACACAACAATAACTTTACCCCATTTCCCTATTACACCAACAAANTAACTTAATTTCAAACAACCAACCAAGGCCTGGCTCAGTNNTCTAAACCATNGACCCCACGTNTAACCACTTTGCCAACACAGCAAAGCTCGGCACNACCAAGATTAGGGTAGGTAAACGAGGNGTTANGACACGTGGACCAACCCTGAGGNGAGGACCCGACCATCTNGTTAGCAAANNANCCTTACGAATTCAACCTTTGGCANCANTTGGACTTAATACCAGGGGGACGGACCCGAAAAATTCCTCAACNGGNTTACTGTGCCNAACTATCAAATGCACTTTATGCACATNNGGGTCTNAGAAAGNNGCGACACAACATGGAGGAGAANACCGTGGGGACACATTAACCCCCCCTTATATGGCGTGACGCCCACACACANCNGCAGAGACCCCCGGGTATAGACAGCAGGNGCTN] [+] EMBL AL695197 [GCAGATTCCCGCNGGTTATATGCAAAACAATGCAAAACAAGAACGAAAATGTAAAACACAGCGAAACAAAACAAATTCCTAGATACAATGTGAAAACGAGTTTGTTGACAAACCGAAACTGATTGCAAACTGATTTTTAACATATCCGCAACACTTCACATCATCCGTGCCATCAGGAGTAGTAGTAACAAGGGTGACACACAGTGCACAACAGCACACAAGGCCAAAACAGAACGCAACACCGAANACCGGCACATGCAANACCAACACAAAAACCACACATTGCAGCACATGGCACTCAAATNGGAGCANAACATTAAGGTCAAAATAGCCATCTGGAGGCATTNGCATTGCATCCGGTNTCTATCCCTNATATNTAGTAACGTCAATCNGCATTGCACACAGGCATGAAAAGGAAATTGGAATTGGAATTCCATATCCAGGCTAGTCAAGCCCCCACCAACCAAACNAACAAACAAANGGACGCACAAAGCGGGAAACCCANAGCGGCCAAAAACCAACACAAGTGGCCCTAGGTCACACAACAATAACTTTACCCCATTTCCCTATTACACCAACAAANTAACTTAATTTCAAACAACCAACCAAGGCCTGGCTCAGTNNTCTAAACCATNGACCCCACGTNTAACCACTTTGCCAACACAGCAAAGCTCGGCACNACCAAGATTAGGGTAGGTAAACGAGGNGTTANGACACGTGGACCAACCCTGAGGNGAGGACCCGACCATCTNGTTAGCAAANNANCCTTACGAATTCAACCTTTGGCANCANTTGGACTTAATACCAGGGGGACGGACCCGAAAAATTCCTCAACNGGNTTACTGTGCCNAACTATCAAATGCACTTTATGCACATNNGGGTCTNAGAAAGNNGCGACACAACATGGAGGAGAANACCGTGGGGACACATTAACCCCCCCTTATATGGCGTGACGCCCACACACANCNGCAGAGACCCCCGGGTATAGACAGCAGGNGCTN] consensusID : consensus_6513#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 838 fasta sequence [CCGGGAAAAAGGCAAACAAAATGCTGTAAAAATATACATTCTTTACAAATATTTAAACTACAGCTGTGTTTTATATATTTGTAAAGAATGTATATTTTTACAAATATATAAAACACAGCTGTAGTTTAAATGCCAGTACATGAAGAGTGAAAGTGTGTTGGTGAGGCACGGGGCGCTGTCAGCCTCATACTGAATGATATTGGGCCAATCTACGTTGCAATACTATTAATGTTAGGGAACGGGACGGGAATCCCCTTGCGGCAAACGAGCCGGTGCCGGTGGTTTCCACGAATTTGTTTTTTTTTCCTCAGTCCATCTGTTCAAAGTTGTTGATTGTAGTTGAATTTAGTAGTGTACTACTTCAGTGCTATACAAGGCGTCGAAATTGCAACGGCATACTACACTTGCGTCATTAGTACCACCTCTTATTAAACCTTACAAGTAGGGCGCCATCCACCACCCACTCTGGTTTCGATCCTGCTCCGCGTGATGTACCAAATATTTGGATGTTAACCATGTTCGCGGGCGGCGGCAAATCGTCCGGCAAGCCGCGCGTGCCAGCATGGAAAGATTCTAATTACTTTACTTATTGCAGCAACCGTGTGGTTAGCACATGCTGTAAGCAGCAAGTAAAGCACAAGCAATGTAAAAATGAATTTGCATGGAAAACGAAGGAAAATCACGAATCAAAAAGCTGTGCCCAGAATCAATACGAATATATACCGGTGGGAAACAATAACAAATTACAAAACAGCACGAACATTGGAAATCGTTAGACAGGTTTAAACGAAAGCATAATTAACAGAGGATGTATTTTTGTTGAAATAAAAGTCAAAAG] [+] EMBL BM609403 [CCGGGAAAAAGGCAAACAAAATGCTGTAAAAATATACATTCTTTACAAATATTTAAACTACAGCTGTGTTTTATATATTTGTAAAGAATGTATATTTTTACAAATATATAAAACACAGCTGTAGTTTAAATGCCAGTACATGAAGAGTGAAAGTGTGTTGGTGAGGCACGGGGCGCTGTCAGCCTCATACTGAATGATATTGGGCCAATCTACGTTGCAATACTATTAATGTTAGGGAACGGGACGGGAATCCCCTTGCGGCAAACGAGCCGGTGCCGGTGGTTTCCACGAATTTGTTTTTTTTTCCTCAGTCCATCTGTTCAAAGTTGTTGATTGTAGTTGAATTTAGTAGTGTACTACTTCAGTGCTATACAAGGCGTCGAAATTGCAACGGCATACTACACTTACGTCATTAGTACCACCTCTTATTAAACCTTACAAGTAGGGCGCCATCCACCACCCACTCTGGTTTCGATCCTGCTCCGCGTGATGTACCAAATATTTGGATGTTAACCATGTTCGCGGGCGGCGGCAAATCGTCCGGCAAGCCGCGCGTGCCAGCATGGAAAGATTCTAATTACTTTACTT ] [+] EMBL BM609117 [ ccgCACAGCTGTAGTTTAAATGCCAGTACATGAAGTGTGAAAGTGTGTTGGCGAGGCACGGGGCGCTGTCAGCCTCATACTGAATGATATTGGGCCAATCTACGTTGCAATACTATTAATGTTAGGGAACGGGACGGGAATCCCCTTGCGGCAAACGAGCCGGTGCCGGTGGTTTCCACGAATTTGTTTTTTTTTCCTCAGTCCATCTGTTCAAAGTTGTTGATTGTAGTTGAATTTAGTAGTGTACTACTTCAGTGCTATACAAGGCGTCGAAATTGCAACGGCATACTACACTTGCGTCATTAGTACCACCTCTTATTAAACCTTACAAGTAGGGCGCCATCCACCACCCACTCTGGTTTCGATCCTGCTCCGCGTGATGTACCAAATATTTGGATGTTAACCATGTTCGCGGGCGGCGGCAAATCGTCCGACAAGTCGCGCGTGCCAGCGTGGAAAGACTCTAATTACTTTACTTATTGCAGCAACCGTGTGGTTAGCACATGCTGTAAGCAGCAAGTAAAGCACAAGCAATGTAAAAATGAATTTGCATGGAAAACGAAGGAAAATCACGAATCAAAAAGCTGTGCCCAGAATCAATACGAATATATACCGGTGGGAAACAATAACAAATTACAAAACAGCACGAACATTGGAAATCGTTAGACAGGTTTAAACGAAAGCATAATTAACAGAGGATGTATTTTT ] [+] EMBL BX616930 [ AGGCACGGGGCGCTGTCAGCCTCATACTGAATGATATTGGGCCAATCTACGTTGCAATACTATTAATGTTAGGGAACGGGACGGGAATCCCCTTGCGGCAAACGAGCCGGTGCCGGTGGTTTCCACGAATTTGTTTTTTTTTCCTCAGTCCATCTGTTCAAAGTTGTTGATTGTAGTTGAATTTAGTAGTGTACTACTTCAGTGCTATACAAGGCGTCGAAATTGCAACGGCATACTACACTTGCGTCATTAGTACCACCTCTTATTAAACCTTACAAGTAGGGCGCCATCCACCACCCACTCTGGTTTCGATCCTGCTCCGCGTGATGTACCAAATATTTGGATGTTAACCATGTTCGCGGGCGGCGGCAAATCGTCCGGCAAGCCGCGCGTGCCAGCATGGAAAGATTCTAATTACTTTACTTATTGCAGCAACCGTGTGGTTAGCACATGCTGTAAGCAGCAAGTAAAGCATAAGCAATGTAAAAATGAATTTGCATGGAAAATGAAGGAAAATCACGAATCAAAAAGCTGTGCCCAGAATCAATACGAATATATACCGGTGGGAAACAATAACAAATTACAAAACAGCACGAACATTGGAAATCGTTAGACAGGTTTAAACGAAAGCATAATTAACAGAGGATGTATTTTTGTTGAAATAAAAGTCAAAAG] consensusID : consensus_6513#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 707 fasta sequence [CCGAAAACAAATCATGCAAAACAATGCAAAACAAGAACGAAAATGTAAAACACAGCGAAACAAAACAAATTCCTAGATACAATGTGAAAACGAGTTTGTTGACAAACCGAAACTGATTGCAAACTGATTTTTAAATATCGAAACTTACATATCGTGCATAGGAGTAGTAGTAAAAGGGTGAAAAGTGAAAAGAAAAGGCCAAACAGAACGAAACGAAACGGAATGAAACAAAAAAAACAAATGCAGAATGGACTAATGAGAAAATAAGTAAATGCATCGAGGATGATGATCGTTTTCTATTTGTACGTATCGATGAAAGATGAAAGAATGAATGAATCATTTGGTGTAGCCCACAACAACACACAAGCGAAGGGAAAAAGGCAAACAAAATGCTGTAAAAATATACATTCTTTACAAATATATAAAACACAGCTGTAGTTTAAATGCCAGTACATGAAGAGTGAAAGTTGTGTTGGTGAGGCACCGGGGCGCTGTCAGCCTCATACTGAATGATATTGGGCCAATCTACGTTGCAATACTATTAATGTTAGGGAACGGGACGGGAATCCCCTTGCGGCAAACGAGCCGGGTGCCGGTGGTTTCCACGAATTTGTTTTTTTTTCCTCAGTCCATCTGGTTCAAAGTTGTTGATTGTAGTTGAATTTAGTAGTGGTACTACTTCAGTGCTATACAAGGCGTCGAAATTG] [+] EMBL BM598093 [CCGAAAACAAATCATGCAAAACAATGCAAAACAAGAACGAAAATGTAAAACACAGCGAAACAAAACAAATTCCTAGATACAATGTGAAAACGAGTTTGTTGACAAACCGAAACTGATTGCAAACTGATTTTTAAATATCGAAACTTACATATCGTGCATAGGAGTAGTAGTAAAAGGGTGAAAAGTGAAAAGAAAAGGCCAAACAGAACGAAACGAAACGGAATGAAACAAAAAAAACAAATGCAGAATGGACTAATGAGAAAATAAGTAAATGCATCGAGGATGATGATCGTTTTCTATTTGTACGTATCGATGAAAGATGAAAGAATGAATGAATCATTTGGTGTAGCCCACAACAACACACAAGCGAAGGGAAAAAGGCAAACAAAATGCTGTAAAAATATACATTCTTTACAAATATATAAAACACAGCTGTAGTTTAAATGCCAGTACATGAAGAGTGAAAGTTGTGTTGGTGAGGCACCGGGGCGCTGTCAGCCTCATACTGAATGATATTGGGCCAATCTACGTTGCAATACTATTAATGTTAGGGAACGGGACGGGAATCCCCTTGCGGCAAACGAGCCGGGTGCCGGTGGTTTCCACGAATTTGTTTTTTTTTCCTCAGTCCATCTGGTTCAAAGTTGTTGATTGTAGTTGAATTTAGTAGTGGTACTACTTCAGTGCTATACAAGGCGTCGAAATTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6513#1 --------CCGGGAAAAAGGCAAACAAAATGCTGTAAAAATATACATTCTTTACAAATAT 52 consensus_6513#2 --------CCGAAAACAAATCATGCAAAACAATGCAAAACAAGA--------ACGAAAAT 44 consensus_6513#0 GCAGATTCCCGCNGGTTA--TATGCAAAACAATGCAAAACAAGA--------ACGAAAAT 50 *** * * ***** ** **** * * ** ** ** consensus_6513#1 TTAAACTACAGCTGTGTTTTATATATTTGTAAAGAATGTATATTTTTACAAATATAT-AA 111 consensus_6513#2 GTAAAACACAGCGAAACAAAACAAATTCCTAGATACAATGTGAAA--ACGAGTTTGTTGA 102 consensus_6513#0 GTAAAACACAGCGAAACAAAACAAATTCCTAGATACAATGTGAAA--ACGAGTTTGTTGA 108 **** ***** * * *** ** * * * * ** * * * * * consensus_6513#1 AACACAGCTGTAGTTTAAATGCCAGTACATGA-AGAGTG--AAAGTGTGTTGGTGAGGCA 168 consensus_6513#2 CAAACCGAAACTGATTGCAAACTGATTTTTAA-ATATCG--AAACTTACATATCGTGCAT 159 consensus_6513#0 CAAACCGAAACTGATTGCAAACTGATTTTTAACATATCCGCAACACTTCACATCATCCGT 168 * ** * * ** * * * * * * * ** consensus_6513#1 ------CGGGGCGCTGTCAG-CCTCATACTG---AATG------ATATTGGGCCAATCTA 212 consensus_6513#2 ------AGGAGTAGTAGTAA-AAGGGTGAAA---AGTG------AAAAGAAAAGGCCAAA 203 consensus_6513#0 GCCATCAGGAGTAGTAGTAACAAGGGTGACACACAGTGCACAACAGCACACAAGGCCAAA 228 ** * * * * * ** * * consensus_6513#1 -CGTTGCAATACTATTAATGTTAGGGAACGGGACGGGAATCCCCTTGCGGCAAACGAGCC 271 consensus_6513#2 -CAGAACGAAACGAAACGGAATGAAACAAAAAAAACAAATGCAGAATGGACTAATGAGAA 262 consensus_6513#0 ACAGAACGCAACACCGAANACCGGCACATGCAANACCAACACAAAAACCACACATTGCAG 288 * * ** * * ** * * * consensus_6513#1 GGTGC--CGGTGGTTTCCACGAATTTGTTTTTTTTTCCTCAGTCCATCT-GT------TC 322 consensus_6513#2 AATAAG-TAAATGCATCGAGGATGATGATCGTTTTCTATTTGTACGTATCGA------TG 315 consensus_6513#0 CACATGGCACTCAAATNGGAGCANAACATTAAGGTCAAAATAGCCATCTGGAGGCATTNG 348 * * * * * * * * consensus_6513#1 AAAGTTGTTGATTGTAGTTGAATTTAGTAGTGTACTACTT--CAGTGCTATACAAGGCGT 380 consensus_6513#2 AAAGATGA-AAGAATGAATGAATCATTTGGTGTAGC-CCA--CAACAACACACAAG---- 367 consensus_6513#0 CATTGCATCCGGTNTCTATCCCTNATATNTAGTAACGTCAATCNGCATTGCACACAGGCA 408 * * * * * *** * *** consensus_6513#1 CGAAATTGCAACGGCATACTACACTTGCGTCATTAGT------ACCACCTCTTATTAAAC 434 consensus_6513#2 CGAAGGGAAAAAGGCAAACAAAA--TGCTGTAAAAAT------ATACATTCTT------- 412 consensus_6513#0 TGAAAAGGAAATTGGAATTGGAATTCCATATCCAGGCTAGTCAAGCCCCCACCAACCAAA 468 *** ** * * * * consensus_6513#1 CTTACAAGTAGGGCGCCATCCACCACCCA----CTCTGGT--TTCGATCCTGCTCCGCGT 488 consensus_6513#2 --TACAAATA------TATAAAACACA-G----CTGTAGT--TTAAATGCCAGTACATGA 457 consensus_6513#0 CNAACAAACAAANGGACGCACAAAGCGGGAAACCCANAGCGGCCAAAAACCAACACAAGT 528 **** * * * * * * * * * consensus_6513#1 GA----TGTACCAAATATTTGGATGTTAACCATGTTCGCGGGCGGCGGCAAATCGTCCGG 544 consensus_6513#2 AG----AGTGAAAGTTGTGTTGGTGAGGCACCGGGGCGCTGTCAGCCTCATACTGAATGA 513 consensus_6513#0 GGCCCTAGGTCACACAACAATAACTTTACCCCATTTCCCTATTACACCAACAAANTAACT 588 * * * * * * consensus_6513#1 CAAGCCGCGCGTGCCAGCATGGAAAGATTCTAATTACTTTACTTATTGCAGCAACCGTGT 604 consensus_6513#2 TA--TTGGGCCAATCTACGTTGCAATA--CTATTAATGTTA--------GGGAACGGGAC 561 consensus_6513#0 TAATTTCAAACAACCAACCAAGGCCTGGCTCAGTNNTCTAAAC-----CATNGACCCCAC 643 * * * * * * * * ** consensus_6513#1 GGTTAGCACATGCTGTAAGC-AGCAA-GTAAAGCACAAGCAATGTAAAAATGAATTTGC- 661 consensus_6513#2 GGGAATCCCCT--TGCGGCA-AACGA-GCCGGGTGCCGGTGGTTTCCA--CGAATTTGT- 614 consensus_6513#0 GTNTAACCACTTTGCCAACACAGCAAAGCTCGGCACNACCAAGATTAGGGTAGGTAAACG 703 * * * * * * * * * * * * consensus_6513#1 -----ATGGAAAACGAAGGAAAATCACGAATCAAAAAGCTGTGCCCA-GAATCAATACGA 715 consensus_6513#2 -----TTTTTTTTCCTCAGTCCATCTGGTTCAAAGTTGTTGATTGTA-GTTGAATTTAGT 668 consensus_6513#0 AGGNGTTANGACACGTGGACCAACCCTGAGGNGAGGACCCGACCATCTNGTTAGCAAANN 763 * * * * * * * consensus_6513#1 ATATATACCGGTGGGAAACAATAACAAATTACAAAACAGCACGAACATTGGAAATCGTTA 775 consensus_6513#2 AGTGGTACTACTTCAGTGCTATACAAGGCGTCGAAATTG--------------------- 707 consensus_6513#0 ANCCTTACGAATTCAACCTTTGGCANCANTTGGACTTAATACCAGGGGGACGGACCCGAA 823 * *** * * consensus_6513#1 GACAGGTTTAAACGAA--AGCATAATTAACAGAGGATGTATTTTTGTTGAAATAAAAGTC 833 consensus_6513#2 ------------------------------------------------------------ consensus_6513#0 AAATTCCTCAACNGGNTTACTGTGCCNAACTATCAAATGCACTTTATGCACATNNGGGTC 883 consensus_6513#1 AAAAG------------------------------------------------------- 838 consensus_6513#2 ------------------------------------------------------------ consensus_6513#0 TNAGAAAGNNGCGACACAACATGGAGGAGAANACCGTGGGGACACATTAACCCCCCCTTA 943 consensus_6513#1 ---------------------------------------------------------- consensus_6513#2 ---------------------------------------------------------- consensus_6513#0 TATGGCGTGACGCCCACACACANCNGCAGAGACCCCCGGGTATAGACAGCAGGNGCTN 1001 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||