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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6517#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1532 fasta sequence
[GATCGCCCGAGGNANATGACGCGATGTAATACAACGCGCTATAGATTATGTGTATGCATCGTAATCATTTGCCGTGGTAAAACCAATCAGTTTCTTTCATGTTGAATGTTGGGATTTATTTGTTTAAACCGTCATAATATAACGATGAAAATAGAATACTTGAAACGCCACAAAGGTTGAAACTGAAATATGAATTTGAATAATTTCACTAAAGTTGAGCAGTGCTTATCTGCTGGCATGGAACTAGAATGGGATGTGAAACCTATTATTCCTGATTTTCCTAAAAAAAATTGTATTAAAATCTGCCATAAACATGTGCCTTTCCATGGGTTTAAGCCATAGGTGATAACGGGGATTAGAATGGGAATGTAACCGATTGATATCCGATTGACAAACAAACAAAACAAGATGACGAACCAAATCAGAATCTAAAAACAACTGAAAACAATCTGGAGAAAATAGTTACGAAATGAGAAACGTCTGCACGCATTGTGTCAACTGCCAGAGATAACAAGGTAATTATTGGTATGTAATATGTTTGCTATTCAATGCTTCTTAATTTACAAATCACAACCACTTACGATATGCCGTCCTGTAGTACTTATTCATAGTTTGATTATACACATACGTAAATAGGAAGAACCTCCTCACCACTGCTGATCAATCGGCAACAATACGGTACACTGATAATAATACCCAATGCACAGTTTGAATATATTTTTTTAAATATATGATTTTTGCGGACCCATATATGAAGGTGATGGCCCCAATACAGTGCAATTCGACATTGGTAATTTAAAATTTCGAAAAAAACAAACATTTTAGTTCGTTAAAGAAACTATTAATGAGCAACGATATTATGTTACATAAACGAGTACATTACATATAGCGATTATACATGGTCGAATGTGTCTGACTGCCGCAAGGAAAACTGTGTAAATTTAAAAGAAATCGCACAAAGTCAAATACCACAATGTGTGCATTTAAAAGATTATTTATTTTGACTAAACAGTCCCCTATATATACTATATTATCTGACTGAAAAAAAAAAACGCAATCCTGATTGCTGCACCGCTGGGGGAACGCGCATGCGTAGTAAAAAAAATCAAGAAAATATGCTGTACAACAAACAAGCCATAAATTTTGTCTAATTTATGTTGAAATTACCAAAGACTGTGATAATGCATCTCTCGCGCATTTGAAAGGATGCTTTACTTTACAAAAAGCGATGTAGAATTATAGATTCTATTTAAAGAATTAACCACTAACACGATAATAATAAGACACACGTATATTATATATACGTCAATATATTGTTTTTATATATCGATACGTAAACGATGATACGTACACTGTTGCACTCGTTTGGAATATTTAAAAAGATTTGCGATCTTGCGAATAGCTTTTTAAAGTTCATACCTAGAAAGGGTTTACCGGCAATAATATAAGGGGAAACGTAGCTAGCATCCCCGAAGTGGCCATCTACTAGAGAAATCAATTCCCCATGGACTGCTACCGTTAATTGGCGCATA]
[+] EMBL AL931241 [GATCGCCCGAGGNANATGACGCGATGTAATACAACGCGCTATAGATTATGTGTATGCATCGTAATCATTTGCCGTGGTAAAACCAATCAGTTTCTTTCATGTTGAATGTTGGGATTTATTTGTTTAAACCGTCATAATATAACGATGAAAATAGAATACTTGAAACGCCACAAAGGTTGAAACTGAAATATGAATTTGAATAATTTCACTAAAGTTGAGCAGTGCTTATCTGCTGGCATGGAACTAGAATGGGATGTGAAACCTATTATTCCTGATTTTCCTAAAAAAAATTGTATTAAAATCTGCCATAAACATGTGCCTTTCCATGGGTTTAAGCCATAGGTGATAACGGGGATTAGAATGGGAATGTAACCGATTGATATCCGATTGACAAACAAACAAAACAAGATGACGAACCAAATCAGAATCTAAAAACAACTGAAAACAATCTGGAGAAAATAGTTACGAAATGAGAAACGTCTGCACGCATTGTGTCAACTGCCAGAGATAACAAGGTAATTATTGGTATGTAATATG ]
[+] EMBL BX629097 [ GTCTGCACGCATTGTGTCAACTGCCAGAGATAACAAGGTAATTATTGGTATGTAATATGTTTGCTATTCAATGCTTCTTAATTTACAAATCACAACCACTTACGATATGCCGTCCTGTAGTACTTATTCATAGTTTGATTATACACATACGTAAATAGGAAGAACCTCCTCACCACTGCTGATCAATCGGCAACAATACGGTACACTGATAATAATACCCAATGCACAGTTTGAATATATTTTTTTAAATATATGATTTTTGCGGACCCATATATGAAGGTGATGGCCCCAATACAGTGCAATTCGACATTGGTAATTTAAAATTTCGAAAAAAACAAACATTTTAGTTCGTTAAAGAAACTATTAATGAGCAACGATATTATGTTACATAAACGAGTACATTACATATAGCGATTATACATGGTCGAATGTGTCTGACTGCCGCAAGGAAAACTGTGTAAATTTAAAAGAAATCGCACAAAGTCAAATACCACAATGTGTGCATTTAAAAGATTATTTATTTTGACTAAACAGTCCCCTATATATACTATATTATCTGACTGAAAAAAAAAAACGCAATCCTGATTGCTGCACCGCTGGGGGAACGCGCATGCGTAGTAAAAAAAATCAAGAAAATATGCTGTACAACAAACAAGCCATAAATTTTGTCTAATTTATGTTGAAATTACCAAAGACTGTGATAATGCATCTCTCGCGCATTTGAAAGGATGCTTTACTTTACAAAAAGCGATGTAGAATTATAGATTCTATTTAAAGAATTAACCACT ]
[+] EMBL BX625810 [ CGCATTGTGTCAACTGCCAGAGATAACAAGGTAATTATTGGTATGTAATATGTTTGCTATTCAATGCTTCTTAATTTACAAATCACAACCACTTACGATATGCCGTCCTGTAGTACTTATTCATAGTTTGATTATACACATACGTAAATAGGAAGAACCTCCTCACCACTGCTGATCAATCGGCAACAATACGGTACACTGATAATAATACCCAATGCACAGTTTGAATATATTTTTTTAAATATATGATTTTTGCGGACCCATATATGAAGGTGATGGCCCCAATACAGTGCAATTCGACATTGGTAATTTAAAATTTCGAAAAAAACAAACATTTTAGTTCGTTAAAGAAACTATTAATGAGCAACGATATTATGTTACATAAACGAGTACATTACATATAGCGATTATACATGGTCGAATGTGTCTGACTGCCGCAAGGAAAACTGTGTAAATTTAAAAGAAATCGCACAAAGTCAAATACCACAATGTGTGCATTTAAAAGATTATTTATTTTGACTAAACAGTCCCCTATATATACTATATTATCTGACTGAAAAAAAAAAACGCAATCCTGATTGCTGCACCGCTGGGGGAACGCGCATGCGTAGTAAAAAAAATCAAGAAAATATGCTGTACAACAAACAAGCCATAAATTTTGTCTAATTTATGTTGAAATTACCAAAGACTGTGATAATGCATCTCTCGCGCATTTGAAAGGATGCTTTACTTTACNAAAAGCGATGTAGAATTATAGATTCTATTTAAAGAATTAACCACTAACACGATAATAATAAGACACACGTATATTATATATA ]
[+] EMBL BX608500 [ TACGGTACACTGATAATAATACCCAATGCACAGTTTGAATATATTTTTTTAAATATATGATTTTTGCGGACCCATATATGAAGGTGATGGCCCCAATACAGTGCAATTCGACATTGGTAATTTAAAATTTCGAAAAAAACAAACATTTTAGTTCGTTAAAGAAACTATTAATGAGCAACGATATTATGTTACATAAACGAGTACATTACATATAGCGATTATACATGGTCGAATGTGTCTGACTGCCGCAAGGAAAACTGTGTAAATTTAAAAGAAATCGCACAAAGTCAAATACCACAATGTGTGCATTTAAAAGATTATTTATTTTGACTAAACAGTCCCCTATATATACTATATTATCTGACTGAAAAAAAAAAACGCAATCCTGATTGCTGCACCGCTGGGGGAACGCGCATGCGTAGTAAAAAAAATCAAGAAAATATGCTGTACAACAAACAAGCCATAAATTTTGTCTAATTTATGTTGAAATTACCAAAGACTGTGATAATGCATCTCTCGCGCATTTGAAAGGATGCTTTACTTTACAAAAAGCGATGTAGAATTATAGATTCTATTTAAAGAATTAACCACTAACACGATAATAATAAGACACACGTATATTATATATACGTCAATATATTGTTTTTATATATCGATACGTAAACGATGATACGTACACTGTTGCACTCGTTTGGAATATTTAAAAAGATTTGCGATCTTGCGAATAGCTTTTTAAAGTTCATACCTAGAAAGGGTTTACCGGCAATAATATAAGGGGAAACGTAGCTAGCATCCCCGAAGTGGCCATCTACTAGAGAAATCAATTCCCCATGGACTGCTACCGTTAATTGGCGCATA]
consensusID : consensus_6517#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence
[CCGCGGACGCGTGGGGGCCAATTGCTTACCTGCGCACGGCATGGGGGTAACAAACAGCTCTAATCTCTACACTTCGGTCGGTACCAAAAGCAAGCAACGGCTATGCAAAATTATGTTTCGAAATGATTTCATTGCATCCTCTTATCTATAGAACCTTCACTGAACAGTCATTCCCTTGAAAGACAAAGCTACCTGGCCGTTGTAAAAATCCATCTACCGGGTACCTGCAAACGCCCTAAATCATCTACAAAAAGGTTGGTAGAGAACCTATTATGCTTTATATTGTCCATAGACAAGCAACAGGCAAACCTTAAATATGATTTCTTTTAAATATTCGTTCGTTTTGCTAATCTTATAGCAGTAATTCTGGAGTAAAAAAATCGTACCAATAAATTCCAACGTTCAAAGCTTTACAATAAAAAGTTATATTGAATTAATGCAGGAAATATACTATAACACGATAATGGTTAAATTTAAAACATGTCTTCCAATAACAGCTAAGCGCATTTGCTGTGTGCTGCGCCATCGTAATTATTAAAATCGAACAAATTGTTTAATGTTTATTACAACAAATCCAAGCATAAGAAAGGAAATGAACGCGATGTAATACAACGCGCTAATAGATTATGTGTATGCATCGTAATCATTTGCCGTGGTAAAACCAATCGGTTTCTTTCATTGGTGAATGGTGGG]
[+] EMBL BM643372 [CCGCGGACGCGTGGGGGCCAATTGCTTACCTGCGCACGGCATGGGGGTAACAAACAGCTCTAATCTCTACACTTCGGTCGGTACCAAAAGCAAGCAACGGCTATGCAAAATTATGTTTCGAAATGATTTCATTGCATCCTCTTATCTATAGAACCTTCACTGAACAGTCATTCCCTTGAAAGACAAAGCTACCTGGCCGTTGTAAAAATCCATCTACCGGGTACCTGCAAACGCCCTAAATCATCTACAAAAAGGTTGGTAGAGAACCTATTATGCTTTATATTGTCCATAGACAAGCAACAGGCAAACCTTAAATATGATTTCTTTTAAATATTCGTTCGTTTTGCTAATCTTATAGCAGTAATTCTGGAGTAAAAAAATCGTACCAATAAATTCCAACGTTCAAAGCTTTACAATAAAAAGTTATATTGAATTAATGCAGGAAATATACTATAACACGATAATGGTTAAATTTAAAACATGTCTTCCAATAACAGCTAAGCGCATTTGCTGTGTGCTGCGCCATCGTAATTATTAAAATCGAACAAATTGTTTAATGTTTATTACAACAAATCCAAGCATAAGAAAGGAAATGAACGCGATGTAATACAACGCGCTAATAGATTATGTGTATGCATCGTAATCATTTGCCGTGGTAAAACCAATCGGTTTCTTTCATTGGTGAATGGTGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6517#0 GATCGCCCGAGGNANATGACGCGATGTAATACAACGCGCTATAGATTATGTGTATGCATC 60
consensus_6517#1 ------------------------------------------------------------
consensus_6517#0 GTAATCATTTGCCGTGGTAAAACCAATCAGTTTCTTTCATGTTGAATGTTGGGATTTATT 120
consensus_6517#1 ------------------------------------------------------------
consensus_6517#0 TGTTTAAACCGTCATAATATAACGATGAAAATAGAATACTTGAAACGCCACAAAGGTTGA 180
consensus_6517#1 ------------------------------------------------------------
consensus_6517#0 AACTGAAATATGAATTTGAATAATTTCACTAAAGTTGAGCAGTGCTTATCTGCTGGCATG 240
consensus_6517#1 ------------------------------------------------------------
consensus_6517#0 GAACTAGAATGGGATGTGAAACCTATTATTCCTGATTTTCCTAAAAAAAATTGTATTAAA 300
consensus_6517#1 ------------------------------------------------------------
consensus_6517#0 ATCTGCCATAAACATGTGCCTTTCCATGGGTTTAAGCCATAGGTGATAACGGGGATTAGA 360
consensus_6517#1 ------------------------------------------------------------
consensus_6517#0 ATGGGAATGTAACCGATTGATATCCGATTGACAAACAAACAAAACAAGATGACGAACCAA 420
consensus_6517#1 ------------------------------------------------------------
consensus_6517#0 ATCAGAATCTAAAAACAACTGAAAACAATCTGGAGAAAATAGTTACGAAATGAGAAACGT 480
consensus_6517#1 ----------------------------------------------------------CC 2
consensus_6517#0 CTGCACGCATTGTG-TCAACTGCCAGAGATAACAAGGTAATTATTGGTATGTAATATGTT 539
consensus_6517#1 GCGGACGCGTGGGGGCCAATTGCTTACCTGCGCACGGCA--TGGGGGTAACAAACAGCTC 60
* **** * * * *** *** ** ** * * **** ** * *
consensus_6517#0 TGCTATTCAATGCTTCTTAATTTACAAATCACAACCACTTACGATATGCCGTCCTGTAGT 599
consensus_6517#1 TAAT-CTCTACACTTCGGTCGGTACCAAAAGCAAGCAACGGCTATGCAAAATTATGT--- 116
* * ** * **** *** ** *** ** * ** * ***
consensus_6517#0 ACTTATTCATAGTTTGATTATACACATACGTAAATAGGAAGAACCTCCTCACCACTGCTG 659
consensus_6517#1 --TTCGAAATGATTTCATTGCATCCTCTTATCTATA----GAACCTTC--------ACTG 162
** ** *** *** * * * *** ****** * ***
consensus_6517#0 ATCAATCGGCAACAATACGGTACACTGATAATAATACCCAATGCACAGTTTGAATATATT 719
consensus_6517#1 AACAGTC-------ATTCCCTTGAAAGACAAAGCTACCTGGC-CGTTGTAAAAATCCATC 214
* ** ** ** * * * ** ** **** * ** *** **
consensus_6517#0 TTTTTAAATATATG-ATTTTTGCGGACCCATATATGAAGGTGATGGCCCCAATACAGTGC 778
consensus_6517#1 TACC-GGGTACCTGCAAACGCCCTAAATCATCTACAAAAAGGTTGGTAGAGAACCTATTA 273
* ** ** * * * *** ** ** * *** * * *
consensus_6517#0 AATTCGACATTGGTAATTTA-AAATTTCGAAAAAAACAAACATTTTAGTTCGTTAAAGAA 837
consensus_6517#1 TGCTTTATATTGTCCATAGACAAGCAACAGGCAAACCTTAAATATGATTTCTTTTAAATA 333
* * **** ** * ** * *** * * ** * * *** ** ** *
consensus_6517#0 ACTATTAATGAGCAACGATATTATGTTACATAAACGAGTACATTACATATAGCGATTATA 897
consensus_6517#1 TTCGTTCGTTT-TGCTAATCTTATAGCA-GTAATTCTGGAGTAAAAAAATCGTACCAATA 391
** * ** **** * *** * * * * ** * ***
consensus_6517#0 CATGGTCGAATGTGTCTGACTGCCGCAAGGAAAACTGTGTAAATTTAAAAGAAATCGCAC 957
consensus_6517#1 AAT--TCCAACGTTCAAAGCTTTACAATAAAAAGTTATATTGAATTAATGCAGG--AAAT 447
** ** ** ** ** * *** * * * * **** * *
consensus_6517#0 AAAGTCAAATACCACAATGTGTGCATTTAAAAGATTATTT---ATTTTGACTAAACAGTC 1014
consensus_6517#1 ATACTATAACACGATAATGGTTAAATTTAAAACATGTCTTCCAATAACAGCTAAGC-GCA 506
* * * ** ** * **** * ******** ** ** ** **** * *
consensus_6517#0 CCCTATATATACTATATTATC-TGACTGAAAAAAAAAAACGCAATCCTGATTGCTGCACC 1073
consensus_6517#1 TTTGCTGTGTGCTGCGCCATCGTAATTATTAAAATCGAACAAATTGTTTAATGTT----T 562
* * * ** *** * * * **** *** * * * * ** *
consensus_6517#0 GCTGGGGGAACGCGCATGCGTAGTAAAAAAAATCAAGAAAATATGCTGTACAACAAACAA 1133
consensus_6517#1 ATTACAACAAATC-CAAGCATAAGAAAGGAAATGAACGCGATGTA--ATACAACGCGCTA 619
* ** * ** ** ** *** **** ** ** * ****** * *
consensus_6517#0 GCCATAAATTTTGTCTAATTTATGTTGAAATTACCAAAGACTGTGATAATGCATCTCTCG 1193
consensus_6517#1 ---ATAGATTATGTGTATGCATCGTAATCATTTGCCGTGGTAAAACCAATCGGTTTCTTT 676
*** *** *** ** ** *** * * *** * ***
consensus_6517#0 CGCATTTGAAAGGATGCTTTACTTTACAAAAAGCGATGTAGAATTATAGATTCTATTTAA 1253
consensus_6517#1 CATTGGTGAATGGTGGG------------------------------------------- 693
* **** ** *
consensus_6517#0 AGAATTAACCACTAACACGATAATAATAAGACACACGTATATTATATATACGTCAATATA 1313
consensus_6517#1 ------------------------------------------------------------
consensus_6517#0 TTGTTTTTATATATCGATACGTAAACGATGATACGTACACTGTTGCACTCGTTTGGAATA 1373
consensus_6517#1 ------------------------------------------------------------
consensus_6517#0 TTTAAAAAGATTTGCGATCTTGCGAATAGCTTTTTAAAGTTCATACCTAGAAAGGGTTTA 1433
consensus_6517#1 ------------------------------------------------------------
consensus_6517#0 CCGGCAATAATATAAGGGGAAACGTAGCTAGCATCCCCGAAGTGGCCATCTACTAGAGAA 1493
consensus_6517#1 ------------------------------------------------------------
consensus_6517#0 ATCAATTCCCCATGGACTGCTACCGTTAATTGGCGCATA 1532
consensus_6517#1 ---------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||