These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6517#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1532 fasta sequence [GATCGCCCGAGGNANATGACGCGATGTAATACAACGCGCTATAGATTATGTGTATGCATCGTAATCATTTGCCGTGGTAAAACCAATCAGTTTCTTTCATGTTGAATGTTGGGATTTATTTGTTTAAACCGTCATAATATAACGATGAAAATAGAATACTTGAAACGCCACAAAGGTTGAAACTGAAATATGAATTTGAATAATTTCACTAAAGTTGAGCAGTGCTTATCTGCTGGCATGGAACTAGAATGGGATGTGAAACCTATTATTCCTGATTTTCCTAAAAAAAATTGTATTAAAATCTGCCATAAACATGTGCCTTTCCATGGGTTTAAGCCATAGGTGATAACGGGGATTAGAATGGGAATGTAACCGATTGATATCCGATTGACAAACAAACAAAACAAGATGACGAACCAAATCAGAATCTAAAAACAACTGAAAACAATCTGGAGAAAATAGTTACGAAATGAGAAACGTCTGCACGCATTGTGTCAACTGCCAGAGATAACAAGGTAATTATTGGTATGTAATATGTTTGCTATTCAATGCTTCTTAATTTACAAATCACAACCACTTACGATATGCCGTCCTGTAGTACTTATTCATAGTTTGATTATACACATACGTAAATAGGAAGAACCTCCTCACCACTGCTGATCAATCGGCAACAATACGGTACACTGATAATAATACCCAATGCACAGTTTGAATATATTTTTTTAAATATATGATTTTTGCGGACCCATATATGAAGGTGATGGCCCCAATACAGTGCAATTCGACATTGGTAATTTAAAATTTCGAAAAAAACAAACATTTTAGTTCGTTAAAGAAACTATTAATGAGCAACGATATTATGTTACATAAACGAGTACATTACATATAGCGATTATACATGGTCGAATGTGTCTGACTGCCGCAAGGAAAACTGTGTAAATTTAAAAGAAATCGCACAAAGTCAAATACCACAATGTGTGCATTTAAAAGATTATTTATTTTGACTAAACAGTCCCCTATATATACTATATTATCTGACTGAAAAAAAAAAACGCAATCCTGATTGCTGCACCGCTGGGGGAACGCGCATGCGTAGTAAAAAAAATCAAGAAAATATGCTGTACAACAAACAAGCCATAAATTTTGTCTAATTTATGTTGAAATTACCAAAGACTGTGATAATGCATCTCTCGCGCATTTGAAAGGATGCTTTACTTTACAAAAAGCGATGTAGAATTATAGATTCTATTTAAAGAATTAACCACTAACACGATAATAATAAGACACACGTATATTATATATACGTCAATATATTGTTTTTATATATCGATACGTAAACGATGATACGTACACTGTTGCACTCGTTTGGAATATTTAAAAAGATTTGCGATCTTGCGAATAGCTTTTTAAAGTTCATACCTAGAAAGGGTTTACCGGCAATAATATAAGGGGAAACGTAGCTAGCATCCCCGAAGTGGCCATCTACTAGAGAAATCAATTCCCCATGGACTGCTACCGTTAATTGGCGCATA] [+] EMBL AL931241 [GATCGCCCGAGGNANATGACGCGATGTAATACAACGCGCTATAGATTATGTGTATGCATCGTAATCATTTGCCGTGGTAAAACCAATCAGTTTCTTTCATGTTGAATGTTGGGATTTATTTGTTTAAACCGTCATAATATAACGATGAAAATAGAATACTTGAAACGCCACAAAGGTTGAAACTGAAATATGAATTTGAATAATTTCACTAAAGTTGAGCAGTGCTTATCTGCTGGCATGGAACTAGAATGGGATGTGAAACCTATTATTCCTGATTTTCCTAAAAAAAATTGTATTAAAATCTGCCATAAACATGTGCCTTTCCATGGGTTTAAGCCATAGGTGATAACGGGGATTAGAATGGGAATGTAACCGATTGATATCCGATTGACAAACAAACAAAACAAGATGACGAACCAAATCAGAATCTAAAAACAACTGAAAACAATCTGGAGAAAATAGTTACGAAATGAGAAACGTCTGCACGCATTGTGTCAACTGCCAGAGATAACAAGGTAATTATTGGTATGTAATATG ] [+] EMBL BX629097 [ GTCTGCACGCATTGTGTCAACTGCCAGAGATAACAAGGTAATTATTGGTATGTAATATGTTTGCTATTCAATGCTTCTTAATTTACAAATCACAACCACTTACGATATGCCGTCCTGTAGTACTTATTCATAGTTTGATTATACACATACGTAAATAGGAAGAACCTCCTCACCACTGCTGATCAATCGGCAACAATACGGTACACTGATAATAATACCCAATGCACAGTTTGAATATATTTTTTTAAATATATGATTTTTGCGGACCCATATATGAAGGTGATGGCCCCAATACAGTGCAATTCGACATTGGTAATTTAAAATTTCGAAAAAAACAAACATTTTAGTTCGTTAAAGAAACTATTAATGAGCAACGATATTATGTTACATAAACGAGTACATTACATATAGCGATTATACATGGTCGAATGTGTCTGACTGCCGCAAGGAAAACTGTGTAAATTTAAAAGAAATCGCACAAAGTCAAATACCACAATGTGTGCATTTAAAAGATTATTTATTTTGACTAAACAGTCCCCTATATATACTATATTATCTGACTGAAAAAAAAAAACGCAATCCTGATTGCTGCACCGCTGGGGGAACGCGCATGCGTAGTAAAAAAAATCAAGAAAATATGCTGTACAACAAACAAGCCATAAATTTTGTCTAATTTATGTTGAAATTACCAAAGACTGTGATAATGCATCTCTCGCGCATTTGAAAGGATGCTTTACTTTACAAAAAGCGATGTAGAATTATAGATTCTATTTAAAGAATTAACCACT ] [+] EMBL BX625810 [ CGCATTGTGTCAACTGCCAGAGATAACAAGGTAATTATTGGTATGTAATATGTTTGCTATTCAATGCTTCTTAATTTACAAATCACAACCACTTACGATATGCCGTCCTGTAGTACTTATTCATAGTTTGATTATACACATACGTAAATAGGAAGAACCTCCTCACCACTGCTGATCAATCGGCAACAATACGGTACACTGATAATAATACCCAATGCACAGTTTGAATATATTTTTTTAAATATATGATTTTTGCGGACCCATATATGAAGGTGATGGCCCCAATACAGTGCAATTCGACATTGGTAATTTAAAATTTCGAAAAAAACAAACATTTTAGTTCGTTAAAGAAACTATTAATGAGCAACGATATTATGTTACATAAACGAGTACATTACATATAGCGATTATACATGGTCGAATGTGTCTGACTGCCGCAAGGAAAACTGTGTAAATTTAAAAGAAATCGCACAAAGTCAAATACCACAATGTGTGCATTTAAAAGATTATTTATTTTGACTAAACAGTCCCCTATATATACTATATTATCTGACTGAAAAAAAAAAACGCAATCCTGATTGCTGCACCGCTGGGGGAACGCGCATGCGTAGTAAAAAAAATCAAGAAAATATGCTGTACAACAAACAAGCCATAAATTTTGTCTAATTTATGTTGAAATTACCAAAGACTGTGATAATGCATCTCTCGCGCATTTGAAAGGATGCTTTACTTTACNAAAAGCGATGTAGAATTATAGATTCTATTTAAAGAATTAACCACTAACACGATAATAATAAGACACACGTATATTATATATA ] [+] EMBL BX608500 [ TACGGTACACTGATAATAATACCCAATGCACAGTTTGAATATATTTTTTTAAATATATGATTTTTGCGGACCCATATATGAAGGTGATGGCCCCAATACAGTGCAATTCGACATTGGTAATTTAAAATTTCGAAAAAAACAAACATTTTAGTTCGTTAAAGAAACTATTAATGAGCAACGATATTATGTTACATAAACGAGTACATTACATATAGCGATTATACATGGTCGAATGTGTCTGACTGCCGCAAGGAAAACTGTGTAAATTTAAAAGAAATCGCACAAAGTCAAATACCACAATGTGTGCATTTAAAAGATTATTTATTTTGACTAAACAGTCCCCTATATATACTATATTATCTGACTGAAAAAAAAAAACGCAATCCTGATTGCTGCACCGCTGGGGGAACGCGCATGCGTAGTAAAAAAAATCAAGAAAATATGCTGTACAACAAACAAGCCATAAATTTTGTCTAATTTATGTTGAAATTACCAAAGACTGTGATAATGCATCTCTCGCGCATTTGAAAGGATGCTTTACTTTACAAAAAGCGATGTAGAATTATAGATTCTATTTAAAGAATTAACCACTAACACGATAATAATAAGACACACGTATATTATATATACGTCAATATATTGTTTTTATATATCGATACGTAAACGATGATACGTACACTGTTGCACTCGTTTGGAATATTTAAAAAGATTTGCGATCTTGCGAATAGCTTTTTAAAGTTCATACCTAGAAAGGGTTTACCGGCAATAATATAAGGGGAAACGTAGCTAGCATCCCCGAAGTGGCCATCTACTAGAGAAATCAATTCCCCATGGACTGCTACCGTTAATTGGCGCATA] consensusID : consensus_6517#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence [CCGCGGACGCGTGGGGGCCAATTGCTTACCTGCGCACGGCATGGGGGTAACAAACAGCTCTAATCTCTACACTTCGGTCGGTACCAAAAGCAAGCAACGGCTATGCAAAATTATGTTTCGAAATGATTTCATTGCATCCTCTTATCTATAGAACCTTCACTGAACAGTCATTCCCTTGAAAGACAAAGCTACCTGGCCGTTGTAAAAATCCATCTACCGGGTACCTGCAAACGCCCTAAATCATCTACAAAAAGGTTGGTAGAGAACCTATTATGCTTTATATTGTCCATAGACAAGCAACAGGCAAACCTTAAATATGATTTCTTTTAAATATTCGTTCGTTTTGCTAATCTTATAGCAGTAATTCTGGAGTAAAAAAATCGTACCAATAAATTCCAACGTTCAAAGCTTTACAATAAAAAGTTATATTGAATTAATGCAGGAAATATACTATAACACGATAATGGTTAAATTTAAAACATGTCTTCCAATAACAGCTAAGCGCATTTGCTGTGTGCTGCGCCATCGTAATTATTAAAATCGAACAAATTGTTTAATGTTTATTACAACAAATCCAAGCATAAGAAAGGAAATGAACGCGATGTAATACAACGCGCTAATAGATTATGTGTATGCATCGTAATCATTTGCCGTGGTAAAACCAATCGGTTTCTTTCATTGGTGAATGGTGGG] [+] EMBL BM643372 [CCGCGGACGCGTGGGGGCCAATTGCTTACCTGCGCACGGCATGGGGGTAACAAACAGCTCTAATCTCTACACTTCGGTCGGTACCAAAAGCAAGCAACGGCTATGCAAAATTATGTTTCGAAATGATTTCATTGCATCCTCTTATCTATAGAACCTTCACTGAACAGTCATTCCCTTGAAAGACAAAGCTACCTGGCCGTTGTAAAAATCCATCTACCGGGTACCTGCAAACGCCCTAAATCATCTACAAAAAGGTTGGTAGAGAACCTATTATGCTTTATATTGTCCATAGACAAGCAACAGGCAAACCTTAAATATGATTTCTTTTAAATATTCGTTCGTTTTGCTAATCTTATAGCAGTAATTCTGGAGTAAAAAAATCGTACCAATAAATTCCAACGTTCAAAGCTTTACAATAAAAAGTTATATTGAATTAATGCAGGAAATATACTATAACACGATAATGGTTAAATTTAAAACATGTCTTCCAATAACAGCTAAGCGCATTTGCTGTGTGCTGCGCCATCGTAATTATTAAAATCGAACAAATTGTTTAATGTTTATTACAACAAATCCAAGCATAAGAAAGGAAATGAACGCGATGTAATACAACGCGCTAATAGATTATGTGTATGCATCGTAATCATTTGCCGTGGTAAAACCAATCGGTTTCTTTCATTGGTGAATGGTGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6517#0 GATCGCCCGAGGNANATGACGCGATGTAATACAACGCGCTATAGATTATGTGTATGCATC 60 consensus_6517#1 ------------------------------------------------------------ consensus_6517#0 GTAATCATTTGCCGTGGTAAAACCAATCAGTTTCTTTCATGTTGAATGTTGGGATTTATT 120 consensus_6517#1 ------------------------------------------------------------ consensus_6517#0 TGTTTAAACCGTCATAATATAACGATGAAAATAGAATACTTGAAACGCCACAAAGGTTGA 180 consensus_6517#1 ------------------------------------------------------------ consensus_6517#0 AACTGAAATATGAATTTGAATAATTTCACTAAAGTTGAGCAGTGCTTATCTGCTGGCATG 240 consensus_6517#1 ------------------------------------------------------------ consensus_6517#0 GAACTAGAATGGGATGTGAAACCTATTATTCCTGATTTTCCTAAAAAAAATTGTATTAAA 300 consensus_6517#1 ------------------------------------------------------------ consensus_6517#0 ATCTGCCATAAACATGTGCCTTTCCATGGGTTTAAGCCATAGGTGATAACGGGGATTAGA 360 consensus_6517#1 ------------------------------------------------------------ consensus_6517#0 ATGGGAATGTAACCGATTGATATCCGATTGACAAACAAACAAAACAAGATGACGAACCAA 420 consensus_6517#1 ------------------------------------------------------------ consensus_6517#0 ATCAGAATCTAAAAACAACTGAAAACAATCTGGAGAAAATAGTTACGAAATGAGAAACGT 480 consensus_6517#1 ----------------------------------------------------------CC 2 consensus_6517#0 CTGCACGCATTGTG-TCAACTGCCAGAGATAACAAGGTAATTATTGGTATGTAATATGTT 539 consensus_6517#1 GCGGACGCGTGGGGGCCAATTGCTTACCTGCGCACGGCA--TGGGGGTAACAAACAGCTC 60 * **** * * * *** *** ** ** * * **** ** * * consensus_6517#0 TGCTATTCAATGCTTCTTAATTTACAAATCACAACCACTTACGATATGCCGTCCTGTAGT 599 consensus_6517#1 TAAT-CTCTACACTTCGGTCGGTACCAAAAGCAAGCAACGGCTATGCAAAATTATGT--- 116 * * ** * **** *** ** *** ** * ** * *** consensus_6517#0 ACTTATTCATAGTTTGATTATACACATACGTAAATAGGAAGAACCTCCTCACCACTGCTG 659 consensus_6517#1 --TTCGAAATGATTTCATTGCATCCTCTTATCTATA----GAACCTTC--------ACTG 162 ** ** *** *** * * * *** ****** * *** consensus_6517#0 ATCAATCGGCAACAATACGGTACACTGATAATAATACCCAATGCACAGTTTGAATATATT 719 consensus_6517#1 AACAGTC-------ATTCCCTTGAAAGACAAAGCTACCTGGC-CGTTGTAAAAATCCATC 214 * ** ** ** * * * ** ** **** * ** *** ** consensus_6517#0 TTTTTAAATATATG-ATTTTTGCGGACCCATATATGAAGGTGATGGCCCCAATACAGTGC 778 consensus_6517#1 TACC-GGGTACCTGCAAACGCCCTAAATCATCTACAAAAAGGTTGGTAGAGAACCTATTA 273 * ** ** * * * *** ** ** * *** * * * consensus_6517#0 AATTCGACATTGGTAATTTA-AAATTTCGAAAAAAACAAACATTTTAGTTCGTTAAAGAA 837 consensus_6517#1 TGCTTTATATTGTCCATAGACAAGCAACAGGCAAACCTTAAATATGATTTCTTTTAAATA 333 * * **** ** * ** * *** * * ** * * *** ** ** * consensus_6517#0 ACTATTAATGAGCAACGATATTATGTTACATAAACGAGTACATTACATATAGCGATTATA 897 consensus_6517#1 TTCGTTCGTTT-TGCTAATCTTATAGCA-GTAATTCTGGAGTAAAAAAATCGTACCAATA 391 ** * ** **** * *** * * * * ** * *** consensus_6517#0 CATGGTCGAATGTGTCTGACTGCCGCAAGGAAAACTGTGTAAATTTAAAAGAAATCGCAC 957 consensus_6517#1 AAT--TCCAACGTTCAAAGCTTTACAATAAAAAGTTATATTGAATTAATGCAGG--AAAT 447 ** ** ** ** ** * *** * * * * **** * * consensus_6517#0 AAAGTCAAATACCACAATGTGTGCATTTAAAAGATTATTT---ATTTTGACTAAACAGTC 1014 consensus_6517#1 ATACTATAACACGATAATGGTTAAATTTAAAACATGTCTTCCAATAACAGCTAAGC-GCA 506 * * * ** ** * **** * ******** ** ** ** **** * * consensus_6517#0 CCCTATATATACTATATTATC-TGACTGAAAAAAAAAAACGCAATCCTGATTGCTGCACC 1073 consensus_6517#1 TTTGCTGTGTGCTGCGCCATCGTAATTATTAAAATCGAACAAATTGTTTAATGTT----T 562 * * * ** *** * * * **** *** * * * * ** * consensus_6517#0 GCTGGGGGAACGCGCATGCGTAGTAAAAAAAATCAAGAAAATATGCTGTACAACAAACAA 1133 consensus_6517#1 ATTACAACAAATC-CAAGCATAAGAAAGGAAATGAACGCGATGTA--ATACAACGCGCTA 619 * ** * ** ** ** *** **** ** ** * ****** * * consensus_6517#0 GCCATAAATTTTGTCTAATTTATGTTGAAATTACCAAAGACTGTGATAATGCATCTCTCG 1193 consensus_6517#1 ---ATAGATTATGTGTATGCATCGTAATCATTTGCCGTGGTAAAACCAATCGGTTTCTTT 676 *** *** *** ** ** *** * * *** * *** consensus_6517#0 CGCATTTGAAAGGATGCTTTACTTTACAAAAAGCGATGTAGAATTATAGATTCTATTTAA 1253 consensus_6517#1 CATTGGTGAATGGTGGG------------------------------------------- 693 * **** ** * consensus_6517#0 AGAATTAACCACTAACACGATAATAATAAGACACACGTATATTATATATACGTCAATATA 1313 consensus_6517#1 ------------------------------------------------------------ consensus_6517#0 TTGTTTTTATATATCGATACGTAAACGATGATACGTACACTGTTGCACTCGTTTGGAATA 1373 consensus_6517#1 ------------------------------------------------------------ consensus_6517#0 TTTAAAAAGATTTGCGATCTTGCGAATAGCTTTTTAAAGTTCATACCTAGAAAGGGTTTA 1433 consensus_6517#1 ------------------------------------------------------------ consensus_6517#0 CCGGCAATAATATAAGGGGAAACGTAGCTAGCATCCCCGAAGTGGCCATCTACTAGAGAA 1493 consensus_6517#1 ------------------------------------------------------------ consensus_6517#0 ATCAATTCCCCATGGACTGCTACCGTTAATTGGCGCATA 1532 consensus_6517#1 --------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||