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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6522#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1507 fasta sequence
[TTTTATTCGCAAGTTCGTATATTGGTGGTACGCTGCTCACCACAGCATCGTCATCATCAAGCTCGATATACTCCACGGCACATTTCCGAGGAAACCAACCGCGAACCCGCTTCGGAATAGTTTTTTTCGTTGGTTCCTGTAGTTTTTCGCCAAACAACCAGTGCTTTCTCCATCTGGTAACACGAACGATGTCATCAACCTCAAGCTTAATTCGCGGCTCATCGGTAAGCGGAGGCGAAAGGCACACCGACGGTCCTTGCGAAAACAGTGGAAACCAGCTTCCCGTCGCCGGTCGAACAATGGTGTACGTCCGTGTTCGTGCCCGTTTTTCCTCTTTTTGTGCTAATTGTTCACGCGTTAGTTTAACTGGTCGCATCCTTCGACGACGGGCCATTCGTACCCGTTACCGACCGGCCGGCAGGTAAAGTTGATGACCTGCTTCACGTTGCTCCATCGGCCCAGATCGTAAGGATACACGAAGGTCTGCTCGTTGCGTTCCGCTCTAAACCGCGCCTTCTCCACAATCCAATCCTCGATGGCGGTCCGGTTGTTCAGGATGGATCGCACCTGGTACACTAACAAGGCGCCCACCGTGAGTACGACCCCGATGGCCAGCCCGATGTTGAACACGCACAGCACCAGACTCGAAACCGTTAGCTTCACGTTCACTTTCGAGAGCTGGCCAAAAATATACGTACCAGTTGCGATACAGGCCCACGTACAGCGAGGAGCCCAATATCACCGTACCGTGGATGCAGCCGAGCACGGCGAACGCTAGAAAGGCGGTAAAGTAGCCATGGTTGGCCCAACCGACGCAGTTGTTGATCCACGGGCAGTGGTGATCCATCTTGATCACGCACCGGTCACACTTCCGGCAGTGGTGCGAACGCGGCGCCTTGTACCCTCCGCACACGATGCAAAACTGCAACTGCTCGTCCGCTGAGTGATGGGCCGGTCGCCATTTGAGCCGCAAATAGCCCGGCCCGGTTAGCGAGGCCATCACGAAGTAAAACCCGGTGCCGAGGGACAGCAGCACAAATACTGTCTGGTTGATGAGCGCCCACAGGGAAGTGTGCGAGGGCCACCACATGCTGTTCATGTAAATGGTCATCACTGTAATCGATTGTATAATTCCGATTGCAGTTAATGGTCCCCAGTGGAGGAAACGCCGGATGGAATTGTACCACCCGAGGAACATTGTTGCGCGGGCACTGTGCTGCGCCTAGCTGCCTGTATCTGTGCGAAAACTGATGTATGGACCTTTCAGCAACGCTCCTAGTGCTGAGTGTTTGTGTATTTTCCCGACGTTTGAACGGCACACAGTTTTTACATTTTGCCCGCTTTCGTAGGCACTAATTTTCAACAATTTCAGTCACCGTTGCTAAATACCATAATTACCACACTGCCACAAAACCAAAGGTGTCTGGTCTCTGTTGCTTTGAAGTGCGCTGTTTTTTCTCTTCTGCTTGCACCAAACGTTAATCATCGCTTACCATATCAAAAAGAT]
[+] EMBL CNS08EIX [TTTTATTCGCAAGTTCGTATATTGGTGGTACGCTGCTCACCACAGCATCGTCATCATCAAGCTCGATATACTCCACGGCACATTTCCGAGGAAACCAACCGCGAACCCGCTTCGGAATAGTTTTTTTCGTTGGTTCCTGTAGTTTTTCGCCAAACAACCAGTGCTTTCTCCATCTGGTAACACGAACGATGTCATCAACCTCAAGCTTAATTCGCGGCTCATCGGTAAGCGGAGGCGAAAGGCACACCGACGGTCCTTGCGAAAACAGTGGAAACCAGCTTCCCGTCGCCGGTCGAACAATGGTGTACGTCCGTGTTCGTGCCCGTTTTTCCTCTTTTTGTGCTAATTGTTCACGCGTTAGTTTAACTGGTCGCATCCTTCGACGACGGGCCATTCGTACCCGTTACCGACCGGCCGGCAGGTAAAGTTGATGACCTGCTTCACGTTGCTCCATCGGCCCAGATCGTAAGGATACACGAAGGTCTGCTCGTTGCGTTCCGCTCTAAACCGCGCCTTCTCCACAATCCAATCCTCGATGGCGGTCCGGTTGTTCAGGATGGATCGCACCTGGTACACTAACAAGGCGCCCACCGTGAGTACGACCCCGATGGCCAGCCCGATGTTGAACACGCACAGCACCAGACTCGAAACCGTTAGCTTCACGTTCACTTTCGAGAGCTGGCCAAAAATATACGTACCAGTTGCGATACAGGCCCACGTACAGCGAGGAGCCCAATATCACCGTACCGTGGATGCAGCCGAGCACGGCGAACGCTAGAAAGGCGGTAAAGTAGCCATGGTTGGCCCAACCGACGCATTGGTTGATCCACGGGCAGTGGTGATCCATCTTGATCACGCACCGGTCACACTTCCGGCAGTTGTGCGAACGCGGCGCCTTGTACCCTCCGCACACGATGCAAAACTGCAACTGCTCGTCCG ]
[-] EMBL CNS08EIW [ ATGCAGCCGAGCACGGCGAACGCTAGAAAGGCGGTAAAGTAGCCATGGTTGGCCCAACCGACGCAGTTGTTGATCCACTTTCAGTGGTGATCCATCTTGATCACGCACCGGTCACACTTCCGGCAGTGGTGCGAACGCGGCGCCTTGTACCCTCCGCACACGATGCAAAACTGCAACTGCTCGTCCGCTGAGTGATGGGCCGGTCGCCATTTGAGCCGCAAATAGCCCGGCCCGGTTAGCGAGGCCATCACGAAGTAAAACCCGGTGCCGAGGGACAGCAGCACAAATACTGTCTGGTTGATGAGCGCCCACAGGGAAGTGTGCGAGGGCCACCACATGCTGTTCATGTAAATGGTCATCACTGTAATCGATTGTATAATTCCGATTGCAGTTAATGGTCCCCAGTGGAGGAAACGCCGGATGGAATTGTACCACCCGAGGAACATTGTTGCGCGGGCACTGTG TGCGCCTAGCTGCCTGTATCTGTGCGAAAACTGATGTATGGACCTTTCAGCAACGCTCCTAGTGCTGAGTGTTTGTGTATTTTCCCGACGTTTGAACGGCACACAGTTTTTACATTTTGCCCGCTTTCGTAGGCACTAATTTTCAACAATTTCAGTCACCGTTGCTAAATACCATAATTACCACACTGCCACAAAACCAAAGGTGTCTGGTCTCTGTTGCTTTGAAGTGCGCTGTTTTTTCTCTTCTGCTTGCACCAAACGTTAATCATCGCTTACCATATCAAAAAGAT]
[-] EMBL BX625065 [ AGCCGAGCACGGCGAACGCTAGAAAGGCGGTAAAGTAGCCATGGTTGGCCCAACCGACGCAGTTGTTGATCCACGGGCAGTGGTGATCCATCTTGATCACGCACCGGTCACACTTCCGGCAGTGGTGCGAACGCGGCGCCTTGTACCCTCCGCACACGATGCAAAACTGCAACTGCTCGTCCGCTGAGTGATGGGCCGGTCGCCATTTGAGCCGCAAATAGCCCGGCCCGGTTAGCGAGGCCATCACGAAGTAAAACCCGGTGCCGAGGGACAGCAGCACAAATACTGTCTGGTTGATGAGCGCCCACAGGGAAGTGTGCGAGGGCCACCACATGCTGTTCATGTAAATGGTCATCACTGTAATCGATTGTATAATTCCGATTGCAGTTAATGGTCCCCAGTGGAGGAAACGTCGGATGGAATTGTACCACCCGAGGAACATTGTTGCGCGGGCACTGTGCTGCGCCTAGCTGCCTGTATCTGTGCGAAAACTGATGTATGGACCTTTCAGCAACGCTCCTAGTGTTGAGTGTTTGTGTATTTTCCCGACGTTTGAACGGCACACAGTTTTTACATTTTGCCCGCTTTCGTAGCCACTAATTTTCAACAATTTCAGTCACCGTTGCTAAATACCATAATTACCACACTGCCACAAAACCAAAGGTGTCTGGTCTCTGTTGCc ]
[-] EMBL BM586948 [ CAGTGGTGCGAACGCGGCGCCTTGTACCCTCCGCACACGATGCAAAACTGCAACTGCTCGTCCGCTGAGTGATGGGCCGGTCGCCATTTGAGCCGCAAATAGCCCGGCCCGGTTAGCGAGGCCATCACGAAGTAAAACCCGGTGCCGAGGGACAGCAGCACAAATACTGTCTGGTTGATGAGCGCCCACAGGGAAGTGTGCGAGGGCCACCACATGCTGTTCATGTAAATGGTCATCACTGTAATCGATTGTATAATTCCGATTGCAGTTAATGGTCCCCAGTGGAGGAAACGCCGGATGGAATTGTACCACCCGAGGAACATTGTTGCGCGGGCACTGTGCTGCGCCTAGCTGCCTGTATCTGTGCGAAAACTGATGTATGGACCTTTCAGCAACGCTCCTAGTGCTGAGTGTTTGTGTATTTTCCCGACGTTTGAACGGCACACAGTTTTTACATTTTGCCCGCTTTCGTAGGCACTAATTTTCAACAATTTCAGTCACCGTTGCTAAATACCATAATTACCACACTGCCACAAAACCAAAGGTGTCTGGTCTCTGTTGCTTTGAAGTGCGCTGTTTTTTCTCTTCTGCTTGCACCAAACGTTAATCATCGCTTACCcgg ]
consensusID : consensus_6522#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 619 fasta sequence
[CTTTTCTTACATCAGAACAATATTTATCTTTCAAATCTGTTGCTTAATGTACGGTGCACACTCTGTGAGGGCAACTATACAGTCTGTTCCCGAGTAATGCGGTTCTCGATATGCGCGGATTTGGAAATAAGCGGATGTTCTGAATTAAGTTTTTTGGCCATGTGTCAAATCAGTAATCAGTTTGCTCCAAAAATTATACTCTCTGCTTGTACAAACATATTGAAACAAGTGAAGTTACATGAACATGTCATGAATCAAAACTACCCACTCTTCAATTGTATTTTTTGCAGAAAACCATGATATTTGCCATACGCGGATGTCTTCGGAACACATTCACCGCATATCTCGGGAACGACGGCATGTTCTCTTACTTGTTTCTTCTTCCAATGGTTTGTATTTCAAGCGTGTTTTTAAACGTCTTTTTTATTCGCAAGTTCGTATATTGGTGGTACGCTGCTCACCACAGCATCGTCATCATCAAGCTCGATATACTCCACGGCACATTTCCGAGGAAACCAACCGCGAACCCGCTTCGGAATAGTTTTTTTCGTTGGTTCCTGTAGTTTTTCGCCAAACAACCAGTGCTTTCTCCCGGACGCGTGGGCGGACGCGTGGGCGG]
[-] EMBL BM596244 [CTTTTCTTACATCAGAACAATATTTATCTTTCAAATCTGTTGCTTAATGTACGGTGCACACTCTGTGAGGGCAACTATACAGTCTGTTCCCGAGTAATGCGGTTCTCGATATGCGCGGATTTGGAAATAAGCGGATGTTCTGAATTAAGTTTTTTGGCCATGTGTCAAATCAGTAATCAGTTTGCTCCAAAAATTATACTCTCTGCTTGTACAAACATATTGAAACAAGTGAAGTTACATGAACATGTCATGAATCAAAACTACCCACTCTTCAATTGTATTTTTTGCAGAAAACCATGATATTTGCCATACGCGGATGTCTTCGGAACACATTCACCGCATATCTCGGGAACGACGGCATGTTCTCTTACTTGTTTCTTCTTCCAATGGTTTGTATTTCAAGCGTGTTTTTAAACGTCTTTTTTATTCGCAAGTTCGTATATTGGTGGTACGCTGCTCACCACAGCATCGTCATCATCAAGCTCGATATACTCCACGGCACATTTCCGAGGAAACCAACCGCGAACCCGCTTCGGAATAGTTTTTTTCGTTGGTTCCTGTAGTTTTTCGCCAAACAACCAGTGCTTTCTCCCGGACGCGTGGGCGGACGCGTGGGCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6522#0 TTTTATTCGCAAGTTCGTATATTGGTGGTACGCTGCTCACCACAGCATCGTCATCATCAA 60
consensus_6522#1 ------------------------------------------------------------
consensus_6522#0 GCTCGATATACTCCACGGCACATTTCCGAGGAAACCAACCGCGAACCCGCTTCGGAATAG 120
consensus_6522#1 ----------------------------------------CTTTTCTTACATCAGAACAA 20
* * ** *** *
consensus_6522#0 TTTTTTTCGTTGGTTCCTGTAGTTTTTCGCCAAACAACCAGTGCTTTCTCCATCTGGTAA 180
consensus_6522#1 TATTTATCTTTCA-------AATCTGTTGCTTAATGTACGGTGCACACTCT-----GTGA 68
* *** ** ** * * * * ** ** * **** *** ** *
consensus_6522#0 CACGAACGATGTCATCAACCTCAAGCTTAATTCGCGGCTCATCGGTAAGCGGAGGCGAAA 240
consensus_6522#1 GGGCAACTATACAGTCTGTTCCCGAGTAA---TGCGGTTC-TCGATATGCGCGGATTTGG 124
*** ** ** * * * **** ** *** ** *** *
consensus_6522#0 GGCACACCGACGGTCCTTGCGAAAACAGTGGAAACCAGCTTCCCGTCGCCGGTCGAACAA 300
consensus_6522#1 ---AAATAAGCGGATGTTCTGAATTAAGTTT--TTTGGCCATGTGTCA--AATCAGTAAT 177
* * *** ** *** *** ** *** ** *
consensus_6522#0 TGGTGTACGTCCGTGTTCGTGCCCGTTTTTCCTCTTTTTGTGCTAATTGTTCACGCGTTA 360
consensus_6522#1 CAGTTTGCTCCAAAAATTATACTCTCTGCTTGTACAAACATATTGAA-----ACAAGTGA 232
** * * * * * * * * * * * * * ** ** *
consensus_6522#0 GTTTAACTGGTCGCATCCTTCGACGACGGGCCATTCGTACCCGTTACCGACCGGCCGGCA 420
consensus_6522#1 AGTTACATGAACATGTCATGAATCAA--AACTACCCAC-TCTTCAATTGTATTTTTTGCA 289
*** ** * ** * * * * * * * * * ***
consensus_6522#0 GGTAAAGTTGATGACCTGCTTCACGTTGCT-CCATCGGCCCAGATCGTAAGGATACACGA 479
consensus_6522#1 GAAAACCATGAT-ATTTGCCATACGCGGATGTCTTCGGAACACATTCACCGCATATCTCG 348
* ** **** * *** *** * * * **** ** ** * ***
consensus_6522#0 AGGTCTGCTCGTTGCGTTCCGCTCTAAACCGCGCCTTCTCC--ACAATCCAATCCTCGAT 537
consensus_6522#1 GGAACGAC--GGCATGTTC---TCTTACTTGTTTCTTCTTCCAATGGTTTGTATTTCAAG 403
* * * * **** *** * * ***** * * * ** *
consensus_6522#0 GGCGGTCCGGTTGTTCAGGATGGATCGCAC-CTGGTACACTAACAAGGCGCCCACCGTGA 596
consensus_6522#1 CGTGTTTTTAAACGTCTTTTTTATTCGCAAGTTCGTATATTGGTGGTACGCTGCTCACCA 463
* * * ** * ***** * *** * * *** * *
consensus_6522#0 GTACGACCCCGATGGCCAGCCCGATGTTGAACACGCACAGCACCAGACTCGAAACCGTTA 656
consensus_6522#1 CAGCATCGTCATCATCAAGCTCGATAT---ACTC-CACGGCAC-ATTTCCGAGGAAACCA 518
* * * * *** **** * ** * *** **** * *** *
consensus_6522#0 GCTTCACGTTCACTTTCGAGAGCTGGCCAAAAATATACGTACCAGTTGCGATACAGGCCC 716
consensus_6522#1 ACCGCGAACCCGCTTCGGA---------ATAGTTTTTTTCGTTGGTTCC--TGTAGTTTT 567
* * * *** ** * * * * *** * * **
consensus_6522#0 ACGTACAGCGAGGAGCCCAATATCACCGTACCGTGGATGCAGCCGAGCACGGCGAACGCT 776
consensus_6522#1 TCGCCAAACAACCAGTGCTTTCTCCCGGACGCGTGGGCGGACGCGTGGGCGG-------- 619
** * * * ** * * ** * * ***** * * ** * ***
consensus_6522#0 AGAAAGGCGGTAAAGTAGCCATGGTTGGCCCAACCGACGCAGTTGTTGATCCACGGGCAG 836
consensus_6522#1 ------------------------------------------------------------
consensus_6522#0 TGGTGATCCATCTTGATCACGCACCGGTCACACTTCCGGCAGTGGTGCGAACGCGGCGCC 896
consensus_6522#1 ------------------------------------------------------------
consensus_6522#0 TTGTACCCTCCGCACACGATGCAAAACTGCAACTGCTCGTCCGCTGAGTGATGGGCCGGT 956
consensus_6522#1 ------------------------------------------------------------
consensus_6522#0 CGCCATTTGAGCCGCAAATAGCCCGGCCCGGTTAGCGAGGCCATCACGAAGTAAAACCCG 1016
consensus_6522#1 ------------------------------------------------------------
consensus_6522#0 GTGCCGAGGGACAGCAGCACAAATACTGTCTGGTTGATGAGCGCCCACAGGGAAGTGTGC 1076
consensus_6522#1 ------------------------------------------------------------
consensus_6522#0 GAGGGCCACCACATGCTGTTCATGTAAATGGTCATCACTGTAATCGATTGTATAATTCCG 1136
consensus_6522#1 ------------------------------------------------------------
consensus_6522#0 ATTGCAGTTAATGGTCCCCAGTGGAGGAAACGCCGGATGGAATTGTACCACCCGAGGAAC 1196
consensus_6522#1 ------------------------------------------------------------
consensus_6522#0 ATTGTTGCGCGGGCACTGTGCTGCGCCTAGCTGCCTGTATCTGTGCGAAAACTGATGTAT 1256
consensus_6522#1 ------------------------------------------------------------
consensus_6522#0 GGACCTTTCAGCAACGCTCCTAGTGCTGAGTGTTTGTGTATTTTCCCGACGTTTGAACGG 1316
consensus_6522#1 ------------------------------------------------------------
consensus_6522#0 CACACAGTTTTTACATTTTGCCCGCTTTCGTAGGCACTAATTTTCAACAATTTCAGTCAC 1376
consensus_6522#1 ------------------------------------------------------------
consensus_6522#0 CGTTGCTAAATACCATAATTACCACACTGCCACAAAACCAAAGGTGTCTGGTCTCTGTTG 1436
consensus_6522#1 ------------------------------------------------------------
consensus_6522#0 CTTTGAAGTGCGCTGTTTTTTCTCTTCTGCTTGCACCAAACGTTAATCATCGCTTACCAT 1496
consensus_6522#1 ------------------------------------------------------------
consensus_6522#0 ATCAAAAAGAT 1507
consensus_6522#1 -----------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||