These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6524#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 659 fasta sequence [CCGCGGACGCGTGGGCGATAGCGCGACAAAAAATGGACAAAAATGGTCGGTCCAGTGGTGTCTCAAACCCAGACCGTGCACACTCCTGCTTTGGAGTGAACCTAGCAAGTCGCACCGTCGTCTAGCAATAGTGTAAATGAATAAGCCTTTCTCCTGGAGTAGGCAAAACTCAAACAGAATAACAATCGAGGAAAAGGAACGGAACGGCGATACATATCCCAAAAACCG--TTTTTGGAACAAAGAACCCGAACTAGTAGTACTGCTGCTACTACTGCACATCCCGTAAACACACCAGAG-GTGTGCTTTTGGAACAGATTACTACTACTATTACTACTACAACCTGCATCTAATTTTCTGAAGCAGTTCTTCACTTAGTTCTTAGAGTAAAGTTGAACCTAAGCAGAAAC---AAAAAACCCATCTAGCCAAAAACAAAAAAAATCTCCAATTCCTAATACAATTTGCACAGCGCGCTTTTCACTGGGATAAGTCTGTTGTGGTTCTTCGTGTCTTGTACATTGCCAACGCTACCTAGTAGCAAGCGCATGAGAGATCTGAGCTGGGAACCACCAACTACGATCGAGCAGAGCTAGAGTTTTAGTGCGTTTAAGAAATGTAAAAT------GGTGAATTCGACGTTCGAATAAACAAAAAAAGCACACACA] [+] EMBL BM632666 [CCGCGGACGCGTGGGCGATAGCGCGACAAAAAATGGACAAAAATGGTCGGTCCAGTGGTGTCTCAAACCCAGACCGTGCACACTCCTGCTTTGGAGTGAACCTAGCAAGTCGCACCGTCGTCTAGCAATAGTGTAAATGAATAAGCCTTTCTCCTGGAGTAGGCAAAACTCAAGCAGAATAACAATCGAGGAAAAGGAACGGAACGGCGATACATATCCCAAAACCCGTTTTTTTTGAACAAAGAACCCGAACTAGTAGTACCGCTGCTACTACTACACATCCCGTAAACACACCAGAG GTGTGCTTTTGGAACAGATTACTACTACTATTACTACTACAACCTGCATCTAATTTTCTGAAGCAGTTCTTCACTTAGTTCTTAGAGTAAAGTTGCACCTAAGCAGAAACAAAAAAAAACCCATCTAGCCAAAAAC AAAAATCTCCAATTTCTAATGCAATTTGCACACCGCGCTTTTCACTGGGATAAGTCTTTTGTGGTTCTTCGTGTC TGTACATTGCCAATGCTACCTAGTAGTAAGCGCATGAGAGATCTGAGCTGCGAACCACTAACTACGATCGAGCAGAGCTAGAGTTTTAGTGCGTTTAAGAAATGTAAAAT GGTGAATTCGAC ] [+] EMBL BM619307 [ ccggcgAAAACATGGACAGAAATGGTCGGGCCAGTGGTGTCTCATACCCGGACCGTGCACACTCCTGCTTTGGAGTGAACCCAGGAAGTCGCACCGGCGTCTATAAATAGTGTAAATGAATACGCCTTTCTCCTGGAGTAGGCAAAACTCACACAGAATAACAATCGAGGAGAAGGAACGGAACGGCGATACATATCCCAAAAACCG TTTTTGGAACAAAGAACCCGAACTAGTAGTACTGCTGCTACTACTGCACATCCCGTAAACACACCAGAG GTGTGCTTTTGGAACAGATTACTACTACTATTACTACTACAACCTGCATCTAATTT ] [+] EMBL BX611678 [ TTCCTCCTGGAGGAGGCATAACTCAAACAGAATAACAATCGAGGAAAAGGAACGGAACGGCGATACATATCTCAAAAACCG TTTTTGGAACAAAGAACCCGAACTAGTAGTACTGCTGCTACTACTGCACATCCCGTAAACACACCAGAG GTGTGCTTTTGGAACAGATTACTACTACTATTACTACGACAACCTGCATCTAATTTTCTGAAGCAGTTCTTCACTTAGTTCTTAGAGTAAAGTTGAACCTAAGCAGAAAC AAAAAACCCATCTAGCCAAAAACAAAAAAAATCTCCAATTCCTAATACAATTTGCACAGCGCGCTTTTCACTGGGATAAGTCTGTTGTGGTTCTTCGTGTCTTGTACATTGCCAACGCTACCTAGTAGCAAGCGCATGAGAGATCTGAGCTGGGAACCACCAACTACGATCG ] [-] EMBL BX611677 [ tcCTCCTGGAGGAGGCATAACTCAAACAGAATAACAATCGAGGAAAAGGAACGGAACGGCGATACATATCTCAAAAACCG TTTTTGGAACAAAGAACCCGAACTAGTAGTACTGCTGCTACTACTGCACATCCCGTAAACACACCAGAGCGTGTGCTTTTGGAACAGATTACTACTACTATTACTACGACAACCTGCATCTAATTTTCTGAAGCAGTTCTTCACTTAGTTCTTAGAGTAAAGTTGAACCTAAGCAGAAAC AAAAAACCCATCTAGCCAAAAACAAAAAAAATCTCCAATTCCTAATACAATTTGCACAGCGCGCTTTTCACTGGGATAAGTCTGTTGTGGTTCTTCGTGTCTTGTACATTGCCAACGCTACCTAGTAGCAAGCGCATGAGAGATCTGAGCTGGGAACCACCAACTACGATCGAGCAGAGCTAGAGTTTAAGTGCGTTTAAGAAATTTATAATGTTTTCGGTGAATTCGACGTTCGAATAAACAAAAAAAGCACACACA] consensusID : consensus_6524#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 496 fasta sequence [CCGCCCACGCGTCCGCTAGTTTCTAGACGATAGCGCGAAAAAAGTGGACAAAAATGGTCGGTCCAGTGGTGTCTCAAACCCAGACCGTTTGGAGTGAACCTAGCAAGTCGCACCGTCGGCTAGAAATAGTGTAAATGAATAAGCCTTTCTCCTGGAGTAGGCAAAACTCAAGCAGAATAACAATCGAGGAAAAGGAACGGAACGGCGATACATATCCCAAAACCCGTTGTTTTGGAACAAAGAACCCGAACTAGTAGTACCGCTGCTACTACTACACATCCCGAAAACACACCAGAGGTGTGCTTTTGGAACAGATTACTACTACTATTACTACTACAACCTGCATCTAATTTTCTGAAGCAGTTCTTCACTTAGTTCTTAGAGTAAAGTTGCACCTAAGCAGAAACCAAAAAAAACCCCATCTAGCCAAAAACAAAAAAATCTCCAATTTCTAATGCGATTTGCACACTGCGCTTTTCACTGGGATAAGTCTTTT] [+] EMBL BM653625 [CCGCCCACGCGTCCGCTAGTTTCTAGACGATAGCGCGAAAAAAGTGGACAAAAATGGTCGGTCCAGTGGTGTCTCAAACCCAGACCGTTTGGAGTGAACCTAGCAAGTCGCACCGTCGGCTAGAAATAGTGTAAATGAATAAGCCTTTCTCCTGGAGTAGGCAAAACTCAAGCAGAATAACAATCGAGGAAAAGGAACGGAACGGCGATACATATCCCAAAACCCGTTGTTTTGGAACAAAGAACCCGAACTAGTAGTACCGCTGCTACTACTACACATCCCGAAAACACACCAGAGGTGTGCTTTTGGAACAGATTACTACTACTATTACTACTACAACCTGCATCTAATTTTCTGAAGCAGTTCTTCACTTAGTTCTTAGAGTAAAGTTGCACCTAAGCAGAAACCAAAAAAAACCCCATCTAGCCAAAAACAAAAAAATCTCCAATTTCTAATGCGATTTGCACACTGCGCTTTTCACTGGGATAAGTCTTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6524#0 ------------CCGCGGACGCGTGGGCGATAGCGCGACAAAAAATGGACAAAAATGGTC 48 consensus_6524#1 CCGCCCACGCGTCCGCTAGTTTCTAGACGATAGCGCGA-AAAAAGTGGACAAAAATGGTC 59 **** * * *********** ***** *************** consensus_6524#0 GGTCCAGTGGTGTCTCAAACCCAGACCGTGCACACTCCTGCTTTGGAGTGAACCTAGCAA 108 consensus_6524#1 GGTCCAGTGGTGTCTCAAACCCAGACCGT-------------TTGGAGTGAACCTAGCAA 106 ***************************** ****************** consensus_6524#0 GTCGCACCGTCGTCTAGCAATAGTGTAAATGAATAAGCCTTTCTCCTGGAGTAGGCAAAA 168 consensus_6524#1 GTCGCACCGTCGGCTAGAAATAGTGTAAATGAATAAGCCTTTCTCCTGGAGTAGGCAAAA 166 ************ **** ****************************************** consensus_6524#0 CTCAAACAGAATAACAATCGAGGAAAAGGAACGGAACGGCGATACATATCCCAAAAACCG 228 consensus_6524#1 CTCAAGCAGAATAACAATCGAGGAAAAGGAACGGAACGGCGATACATATCCCAAAACCCG 226 ***** ************************************************** *** consensus_6524#0 TT--TTTGGAACAAAGAACCCGAACTAGTAGTACTGCTGCTACTACTGCACATCCCGTAA 286 consensus_6524#1 TTGTTTTGGAACAAAGAACCCGAACTAGTAGTACCGCTGCTACTACTACACATCCCGAAA 286 ** ****************************** ************ ********* ** consensus_6524#0 ACACACCAGAGGTGTGCTTTTGGAACAGATTACTACTACTATTACTACTACAACCTGCAT 346 consensus_6524#1 ACACACCAGAGGTGTGCTTTTGGAACAGATTACTACTACTATTACTACTACAACCTGCAT 346 ************************************************************ consensus_6524#0 CTAATTTTCTGAAGCAGTTCTTCACTTAGTTCTTAGAGTAAAGTTGAACCTAAGCAGAAA 406 consensus_6524#1 CTAATTTTCTGAAGCAGTTCTTCACTTAGTTCTTAGAGTAAAGTTGCACCTAAGCAGAAA 406 ********************************************** ************* consensus_6524#0 CAAAAAA----CCCATCTAGCCAAAAACAAAAAAAATCTCCAATTCCTAATACAATTTGC 462 consensus_6524#1 CCAAAAAAAACCCCATCTAGCCAAAAACAAAAAAA-TCTCCAATTTCTAATGCGATTTGC 465 * ***** ************************ ********* ***** * ****** consensus_6524#0 ACAGCGCGCTTTTCACTGGGATAAGTCTGTTGTGGTTCTTCGTGTCTTGTACATTGCCAA 522 consensus_6524#1 ACACTGCGCTTTTCACTGGGATAAGTCTTTT----------------------------- 496 *** *********************** ** consensus_6524#0 CGCTACCTAGTAGCAAGCGCATGAGAGATCTGAGCTGGGAACCACCAACTACGATCGAGC 582 consensus_6524#1 ------------------------------------------------------------ consensus_6524#0 AGAGCTAGAGTTTTAGTGCGTTTAAGAAATGTAAAATGGTGAATTCGACGTTCGAATAAA 642 consensus_6524#1 ------------------------------------------------------------ consensus_6524#0 CAAAAAAAGCACACACA 659 consensus_6524#1 ----------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||