cluster # 6525

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Anopheles gambiae
cluster # 6525 cluster # 6525 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6525#0 length = 830 sequences # 4

consensus_6525#1 length = 524 sequences # 1

consensusID : consensus_6525#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 830
fasta sequence

                              [AACCCTGTATTATCCGCCCCCTCCCCCCCACCGAGGAAGATGTGTGTCGCCCTTCCGGAAATTACCAGATCAGAGTTTGCGGTAGGTGAGTGATTGTTTTCGTAGGACCAAAATGCTTCTAGCCCAGTTCGTGTACTAGAGGTGGCAAGCTGCAGACACTAGAGCAGAGCACCTTCGCTGTTGTAGGATAGGAAGACGTAGGCAGAGGACGACATCGCAAAAGAAGCAGCGGGAATTTCGTTTCCCCATTCGTCCAGTGATTTTCAATTTCGGCTTAGCTTACTTCACTTCCACA--TGTGTGTGTAGGAGCGCAATTACCGTAGATT-AAAAAAACGAAACACCACCATCATTGTTAGGATCTGAGGAGACAGCTTACGATTACATAGGACGCCTTGTTATGTCGCGTTGAAGTTCTGTTGAAGTTCTGTTGATGTCGTTGAGATTTGAGAGAGGCTTTCAGGAGGTTCCAGCTCA-TTTTTTGTGAGTAAG-ATTTATGCGGGAGATGTGTTTGCGTGTATAGTCGTGGATCGGGTAGTCCGTATAAGAGTCGAGCAGAGCAGAACGCAGAGATTGTGGATTCCAAATTGTGATAGAAAACAAGTGTTGTATGATAATTAAAGAAGAAGTTACACGGAATTGGAACATTGTGAGGAGAGGACTTGTTGGAAAGCATCCTATCAAGGGGAATGCTTCTGTACTTCTGTTTTTAGGCAGACGCAGATATGTTTCGT-TTTTTACAGAGATTAACAACAAAGATGGCTCCATC--TATATATATCGTAGCACTTAAGTATCGCACGATCTGTTCCGATCTGCTCGCAGAGAATGATATC]

[+] EMBL BX624990             [AACCCTGTATTATCCGCCCCCTCCCCCCCACCGAGGAAGATGTGTGTCGCCCTTCCGGAAATTACCAGATCAGAGTTTGCGGTAGGTGAGTGATTGTTTTCGTAGGACCAAAATGCTTCTAGCCCAGTTCGTGTACTAGAGGTGGCAAGCTGCAGACACTAGAGCAGAGCACCTTCGCTGTTGTAGAATAGGAAGACGTAGGCAGAGGACGACATCGCAAAAGAAGCAGCGGGAATTTCGTTTCCCCATTCGTCCAGTGATTTTCAATTTCGGCTTAGCTTACTTCACTTCCACA  TGTGTGTGTAGGAGCGCAATTACCGTAGATT AAAAAAACGAAACACCACCATCATTCTTAGGATCTGAGGAGACAGCTTACGATTACATAGGACGCCTTGTTATGTCGCGTTGAAGTTCTGTTGAAGTTCTGTTGATGTCGTTGAGATTTGAGAGAGGCTTTCAGGAGGTTCCAGCTCA TTTTTTGTGAGTAAG ATTTATGCGGGAGATGTGTTTGCGTGTATAGTCGTGGAT                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BM619256             [                                                                                                                                                 ccgGCTGCAGACACTAGAGTAGAGCACCTTCGCTGTTGTAGGATAGGTAGACGTAGGCAGAGGACGACATCGCAAAAGAAGCAGCGGGAATTTCATCTCCTCACTCGTCCAGTGATTTACAATTTCGGCTTAGCTTACTTCACTTCCACATGTGTGTGTGTAGGAGCGCAATTACCGTAGATT  AAAAAACGAAACACCACCATCATTGTTAGGATCTGAGGAGACAGCTTACGATTACATAGGACGCCTTGTTATGTCACGTTGAAGTTCTGTTGAAGTTCTGTTGATGTCGTTGAGATTTGAGAGAGGCTTTCAGGAGGTTCCAGCTCA TTTTTTGTGAGTAAG ATTTGTGCGGGAGATGTGTTTGTGTGTATAGTCGTGGATCGGGTAGTCCGTATAAGAGTCGAGCAGAGCAGAACGCAGAGATTGTGGATTCCAAATTGTGATAGAAAACAAGTGTTGTATGATAATTAAAGAAGAAGTTACACGGAATTGGAACATTGTGAGGAGAGGACTTGTTGGAAAGCATCCTATCAAGGGGAATGCGTCTGTACTTCTGTTTTTAGGCAGACGCAGATATGTTTCGT TTTTTACAGAGATTAACAACAAAGATGGCTCCATC  TATATATATCGTAGCACTTAAGTATCGCACGATCTGTTCCGATCTGCTCGC             ]
[+] EMBL BM625360             [                                                                                                                                                                     ccgGCACCTTCGCTGTTGTAGGATAGGAAGACGTAGGCAGAGGACGACATCGCAAAAGAAGCAGCGGGAATTTCGTTTCCCCATTCGTCCAGTGATTTTCAATTTCGGCTTAGCTTACTTCACTTCCACA  TGTGTGTGTAGGAGCGCAATTACCGTAGATT  AAAAAACGAAACACCACCATCATTGTTAGGATCTGAGGAGACAGCTTACGATTACATAGGACGCCTTGTTATGTCACGTTGAAGTTCTGTTGAAGTTCTGTTGATGTCGTTGAGATTTGAGAGAGGCTTTCAGGAGGTTCCAGCTCATTTTTTTGTGAGTAAGAATTTATGCGGGAGATGTGTTTGTGTGTATAGTCGTGGATCGGGTAGTCCGTATAAGAGTCGAGCAGAGCAGAACGCAGAGATTGTGGATTCCAAATTGTGATAGAAAACAAGTGTTGTATGATAATTAAAGAAGAAGTTACACGGAATTGGAACATTGTGAGGAGAGGACTTGTTGGAAAGCATCCTATCAAGGGGAATGCTTCTGTACTTCTGTTTTTAGGCAGACGCAGATATGTTTCGT TTTTTACAGAGATTAACAACATAGATGGCTCCATCTATATATATATCGTAGCACTTAAGTATCGCACGATCTGTTCCGATCTGCTCGCAGAGAATGATATC]
[+] EMBL BX619778             [                                                                                                                                                                                                                                     aGGGAATTTCGTTTCCCCACTCGTCCAGTGATTTTCAATTTCGGCTTAGCTTACTTCACTTCCACA  TGTGTGTGTAGGAGCGCAATTACCGTAGATTAAAAAAAACGAAACACCACCATCATTGTTAGGATCTGAGGAGACAGCTTACGATTACATAGGACGCCTTGTTATGTCGCGTTGAAATTCTGTTGAAGTTCTGTTGATGTCGTTGAGATTTGAGAGAGGCTTTCAGGAGGTTCCAGCTCA TTTTTTATGAGTAAG ATTTGTGCGGGAGATGTGTTTGCGTGTATAGTCGTGGATCGGGTAGTCCGTATAAGAGTCGAGCAGAGCAGAACGCAGAGATTGTGGATTCCAAATTGTGATAGAAAACAAGTGTTGTATGTTAATTAAAGAAGAAGTTACACGGAATTGGAACATNGTGAGGAGAGGACTTGTTGGAAAGCATCCTATCAAGGGGAATGCTNCTGTACTTCTGTTTTTAGGCAGACGCAGATATGTTTCGTGTTTTTACAGAGATTAACAACAATGATGGCTCC      ATATATATCTTAGCACTTAAGTATCGCACGATCTGTAACGATCTGCTCc              ]




>consensus_6525#0
AACCCTGTATTATCCGCCCCCTCCCCCCCACCGAGGAAGATGTGTGTCGCCCTTCCGGAA
ATTACCAGATCAGAGTTTGCGGTAGGTGAGTGATTGTTTTCGTAGGACCAAAATGCTTCT
AGCCCAGTTCGTGTACTAGAGGTGGCAAGCTGCAGACACTAGAGCAGAGCACCTTCGCTG
TTGTAGGATAGGAAGACGTAGGCAGAGGACGACATCGCAAAAGAAGCAGCGGGAATTTCG
TTTCCCCATTCGTCCAGTGATTTTCAATTTCGGCTTAGCTTACTTCACTTCCACATGTGT
GTGTAGGAGCGCAATTACCGTAGATTAAAAAAACGAAACACCACCATCATTGTTAGGATC
TGAGGAGACAGCTTACGATTACATAGGACGCCTTGTTATGTCGCGTTGAAGTTCTGTTGA
AGTTCTGTTGATGTCGTTGAGATTTGAGAGAGGCTTTCAGGAGGTTCCAGCTCATTTTTT
GTGAGTAAGATTTATGCGGGAGATGTGTTTGCGTGTATAGTCGTGGATCGGGTAGTCCGT
ATAAGAGTCGAGCAGAGCAGAACGCAGAGATTGTGGATTCCAAATTGTGATAGAAAACAA
GTGTTGTATGATAATTAAAGAAGAAGTTACACGGAATTGGAACATTGTGAGGAGAGGACT
TGTTGGAAAGCATCCTATCAAGGGGAATGCTTCTGTACTTCTGTTTTTAGGCAGACGCAG
ATATGTTTCGTTTTTTACAGAGATTAACAACAAAGATGGCTCCATCTATATATATCGTAG
CACTTAAGTATCGCACGATCTGTTCCGATCTGCTCGCAGAGAATGATATC

consensusID : consensus_6525#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 524
fasta sequence

                              [CCGCCCACGCGTCCGCCGCCCCCTCCCCCCCACCGAGGAAGATGTGTGTCGCCCTTCCGGAAATTACCAGATCAGAATTTGCGGTAGGTGAGTGATTGTTTTCGTAGGACCAAAATGCTTCTAGCCCAGTTCGTGTACTATAGGTGGCAAGCTGCAGACACTATAGTATAGCACCTTCGCTGTTGTAGGATAGGAAGACGTACGCAGAGGACGACATCGCAAAAGAAGCAGAGGGAATTTCGTTTCCCCACTCGTCCAGTGATTTTCAATTTCGGCTTATCTTACTTCACTTCCACATGTGTGTGTACGAGCGCAATTACCGTAGATTAAAAAAAACGAAACGCCACCATCATTGTTAAGATCTGAGGAGACAGCTTACGATTACATAGGACGCCTTGTTATGTCGCGTTGAAATTCTGTTGAAGTTCTGTTGATGTCGATGAGATTTGAGAGAGGCTTTCAGGAGGTTCCAGCTCATTTTTTATGACTAAGATTTGTGCGGGAGATGTGTTTGCGTGTATAGT]

[+] EMBL BM636033             [CCGCCCACGCGTCCGCCGCCCCCTCCCCCCCACCGAGGAAGATGTGTGTCGCCCTTCCGGAAATTACCAGATCAGAATTTGCGGTAGGTGAGTGATTGTTTTCGTAGGACCAAAATGCTTCTAGCCCAGTTCGTGTACTATAGGTGGCAAGCTGCAGACACTATAGTATAGCACCTTCGCTGTTGTAGGATAGGAAGACGTACGCAGAGGACGACATCGCAAAAGAAGCAGAGGGAATTTCGTTTCCCCACTCGTCCAGTGATTTTCAATTTCGGCTTATCTTACTTCACTTCCACATGTGTGTGTACGAGCGCAATTACCGTAGATTAAAAAAAACGAAACGCCACCATCATTGTTAAGATCTGAGGAGACAGCTTACGATTACATAGGACGCCTTGTTATGTCGCGTTGAAATTCTGTTGAAGTTCTGTTGATGTCGATGAGATTTGAGAGAGGCTTTCAGGAGGTTCCAGCTCATTTTTTATGACTAAGATTTGTGCGGGAGATGTGTTTGCGTGTATAGT]




>consensus_6525#1
CCGCCCACGCGTCCGCCGCCCCCTCCCCCCCACCGAGGAAGATGTGTGTCGCCCTTCCGG
AAATTACCAGATCAGAATTTGCGGTAGGTGAGTGATTGTTTTCGTAGGACCAAAATGCTT
CTAGCCCAGTTCGTGTACTATAGGTGGCAAGCTGCAGACACTATAGTATAGCACCTTCGC
TGTTGTAGGATAGGAAGACGTACGCAGAGGACGACATCGCAAAAGAAGCAGAGGGAATTT
CGTTTCCCCACTCGTCCAGTGATTTTCAATTTCGGCTTATCTTACTTCACTTCCACATGT
GTGTGTACGAGCGCAATTACCGTAGATTAAAAAAAACGAAACGCCACCATCATTGTTAAG
ATCTGAGGAGACAGCTTACGATTACATAGGACGCCTTGTTATGTCGCGTTGAAATTCTGT
TGAAGTTCTGTTGATGTCGATGAGATTTGAGAGAGGCTTTCAGGAGGTTCCAGCTCATTT
TTTATGACTAAGATTTGTGCGGGAGATGTGTTTGCGTGTATAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6525#0      --AACCCTGTATTATCCGCCCCCTCCCCCCCACCGAGGAAGATGTGTGTCGCCCTTCCGG 58
consensus_6525#1      CCGCCCACGCGTCCGCCGCCCCCTCCCCCCCACCGAGGAAGATGTGTGTCGCCCTTCCGG 60
                          **  *  *   *********************************************

consensus_6525#0      AAATTACCAGATCAGAGTTTGCGGTAGGTGAGTGATTGTTTTCGTAGGACCAAAATGCTT 118
consensus_6525#1      AAATTACCAGATCAGAATTTGCGGTAGGTGAGTGATTGTTTTCGTAGGACCAAAATGCTT 120
                      **************** *******************************************

consensus_6525#0      CTAGCCCAGTTCGTGTACTAGAGGTGGCAAGCTGCAGACACTAGAGCAGAGCACCTTCGC 178
consensus_6525#1      CTAGCCCAGTTCGTGTACTATAGGTGGCAAGCTGCAGACACTATAGTATAGCACCTTCGC 180
                      ******************** ********************** ** * ***********

consensus_6525#0      TGTTGTAGGATAGGAAGACGTAGGCAGAGGACGACATCGCAAAAGAAGCAGCGGGAATTT 238
consensus_6525#1      TGTTGTAGGATAGGAAGACGTACGCAGAGGACGACATCGCAAAAGAAGCAGAGGGAATTT 240
                      ********************** **************************** ********

consensus_6525#0      CGTTTCCCCATTCGTCCAGTGATTTTCAATTTCGGCTTAGCTTACTTCACTTCCACATGT 298
consensus_6525#1      CGTTTCCCCACTCGTCCAGTGATTTTCAATTTCGGCTTATCTTACTTCACTTCCACATGT 300
                      ********** **************************** ********************

consensus_6525#0      GTGTGTAGGAGCGCAATTACCGTAGATTAAAAAAA-CGAAACACCACCATCATTGTTAGG 357
consensus_6525#1      GTGTGTACGAGCGCAATTACCGTAGATTAAAAAAAACGAAACGCCACCATCATTGTTAAG 360
                      ******* *************************** ****** *************** *

consensus_6525#0      ATCTGAGGAGACAGCTTACGATTACATAGGACGCCTTGTTATGTCGCGTTGAAGTTCTGT 417
consensus_6525#1      ATCTGAGGAGACAGCTTACGATTACATAGGACGCCTTGTTATGTCGCGTTGAAATTCTGT 420
                      ***************************************************** ******

consensus_6525#0      TGAAGTTCTGTTGATGTCGTTGAGATTTGAGAGAGGCTTTCAGGAGGTTCCAGCTCATTT 477
consensus_6525#1      TGAAGTTCTGTTGATGTCGATGAGATTTGAGAGAGGCTTTCAGGAGGTTCCAGCTCATTT 480
                      ******************* ****************************************

consensus_6525#0      TTTGTGAGTAAGATTTATGCGGGAGATGTGTTTGCGTGTATAGTCGTGGATCGGGTAGTC 537
consensus_6525#1      TTTATGACTAAGATTTGTGCGGGAGATGTGTTTGCGTGTATAGT---------------- 524
                      *** *** ******** ***************************                

consensus_6525#0      CGTATAAGAGTCGAGCAGAGCAGAACGCAGAGATTGTGGATTCCAAATTGTGATAGAAAA 597
consensus_6525#1      ------------------------------------------------------------
                                                                                  

consensus_6525#0      CAAGTGTTGTATGATAATTAAAGAAGAAGTTACACGGAATTGGAACATTGTGAGGAGAGG 657
consensus_6525#1      ------------------------------------------------------------
                                                                                  

consensus_6525#0      ACTTGTTGGAAAGCATCCTATCAAGGGGAATGCTTCTGTACTTCTGTTTTTAGGCAGACG 717
consensus_6525#1      ------------------------------------------------------------
                                                                                  

consensus_6525#0      CAGATATGTTTCGTTTTTTACAGAGATTAACAACAAAGATGGCTCCATCTATATATATCG 777
consensus_6525#1      ------------------------------------------------------------
                                                                                  

consensus_6525#0      TAGCACTTAAGTATCGCACGATCTGTTCCGATCTGCTCGCAGAGAATGATATC 830
consensus_6525#1      -----------------------------------------------------