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Anopheles gambiae
cluster # 6527 cluster # 6527       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6527#0 length = 922 sequences # 3  
consensus_6527#1 length = 899 sequences # 2  

consensusID : consensus_6527#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 922
fasta sequence
                              [CCGCCCACGCGTCCG-GCGACGAAAGCAAACGATTTCGAACTGCCGCTAGCTTTTTTCCTGAATATTCTGCAAAATGTCTATTGAAATTGAATCCGCCGATGTGATCCGTCTCATTCAGCAATACCTGAAGGAGTCCAACCTACACAAAACGCTGCAAACACTGCAGGAGGAGACGGGTGTTTCGCTCAACACGGTCGACAGCGTGGAAGGGTTCGTGTCCGACATTCACAATGGCCACTGGGACACGGTGCTGAAGGCGATCCAGTCGCTCAAGCTGCCCGACAAAAAGCTGATCGATCTGTACGAGCAGATAGTGCTGGAGCTGATTGAGCTGCGCGAGCTGGGTGCCGCCCGGTCGTTGCTGCGCCAGACGGATCCGATGATAATGCTGAAGCAGCAGGAAGCGGAACGGTACATCCATCTCGAGAACATGCTACAGCGTGCGTATTTCGATCCGCGGGAAGCTTATCCGGAGGGTTCGAGCAAAGAGAAACGCCGAGCCGCCATTGCGACGGCACTGGCCGGTGAGGTGTCCGTGGTACCGTCGTCGAGACTGTTGGCCCTGCTGGGACAGGCGTTGAAATGGCAGCAGCACCAAGGATTGCTACCGCCCGGTACAACGATCGATCTGTTCCGCGGTAAGGCAGCCATCAGGGGACCAGGAGGACGAATCGTACCCGACGCAGCTGGCCCGGCAGATCAAATTCGGCCAAAAGTCGCACGTGGAATGTGCACTGTTTTCACCCGACGGACAGTATCTGGTCACCGGCAGTGTGGACGGCTTCATCGAGGTGTGGAACTTTACCACCCGGCAAGATACGTAAGGATTTGAAGTACCAGGCCCAGGACAACTTCATGATGATGGAGCAAGCCATCCTGTCGATGGCGTTCTCNCGCGACTCNGAAATGCTGGCGACCGGCT]

[+] EMBL BM578972             [CCGCCCACGCGTCCG GCGACGAAAGCAAACGATTTCGAACTGCCGCTAGCTTTTTTCCTGAATATTCTGCAAAATGTCTATTGAAATTGAATCCGCCGATGTGATCCGTCTCATTCAGCAATACCTGAAGGAGTCCAACCTACACAAAACGCTGCAAACACTGCAGGAGGAGACGGGTGTTTCGCTCAACACGGTCGACAGCGTGGAAGGGTTCGTGTCCGACATTCACAATGGCCACTGGGACACGGTGCTGAAGGCGATCCAGTCGCTCAAGCTGCCCGACAAAAAGCTGATCGATCTGTACGAGCAGATAGTGCTGGAGCTGATTGAGCTGCGCGAGCTGGGTGCCGCCCGGTCGTTGCTGCGCCAGACGGATCCGATGATAATGCTGAAGCAGCAGGAAGCGGAACGGTACATCCATCTCGAGAACATGCTACAGCGTGCGTATTTCGATCCGCGGGAAGCTTATCCGGAGGGTTCGAGCAAAGAGAAACGCCGAGCCGCCATTGCGACGGCACTGGCCGGTGAGGTGTCCGTGGTACCGTCGTCGAGACTGTTGGCCCTGCTGGGACAGGCGTTGAAATGGCAGCAGCACCAAGGATTGCTACCGCCCGGTACAACGATCGATCTGTTCCGCGGTAAGGCAGCCATCAGGGGACCAGG                                                                                                                                                                                                                                                                   ]
[+] EMBL BM582308             [            CCGCGCGACGAAAGCAAACGATTTCGAACTGCCGCTAGCTTTTTTCCTGAATATTCTGCAAAATGTCTATTGAAATTGAATCCGCCGATGTGATCCGTCTCATTCAGCAATACCTGAAGGAGTCCAACCTACACAAAACGCTGCAAACACTGCAGGAGGAGACGGGTGTTTCGCTCAACACGGTCGACAGCGTGGAAGGGTTCGTGTCCGACATTCACAATGGCCACTGGGACACGGTGCTGAAGGCGATCCAGTCGCTCAAGCTGCCCGACAAAAAGCTGATCGATCTGTACGAGCAGATAGTGCTGGAGCTGATTGAGCTGCGCGAGCTGGGTGCCGCCCGGTCGTTGCTGCGCCAGACGGATCCGATGATAATGCTGAAGCAGCAGGAAGCGGAACGGTACATCCATCTCGAGAACATGCTACAGCGTGCGTATTTCGATCCGCGGGAAGCTTATCCGGAGGGTTCGAGCAAAGAGAAACGCCGAGCCGCCATTGCGACGGCACTGGCCGGTGAGGTGTCCGTGGTACCGTCGTCGAGACTGTTGGCCCTGCTGGGACAGGCGTTGAAATGGCAGCAGCACCAAGGATTGCTACCGCCCG                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BX621325             [                                       ACTGCCGCTAG TTTTTTCCTGAATATTCTGCAAAATGTCTATTGAAATTGAATCCGCCGATGTGATCCGTCTCATTCAGCAATACCTGAAGGAGTCCAACCTACACAAAACGCTGCAAACACTGCAGGAGGAGACGGGTGTTTCGCTCAACACGGTCGACAGCGTGGAAGGGTTCGTGTCCGACATTCACAATGGCCACTGGGACACGGTGCTGAAGGCGATCCAGTCGCTCAAGCTGCCCGACAAAAAGCTGATCGATCTGTACGAGCAGATAGTGCTGGAGCTGATTGAGCTGCGCGAGCTGGGTGCCGCCCGGTCGTTGCTGCGCCAGACGGATCCGATGATAATGCTGAAGCAGCAGGAAGCGGAACGGTACATCCATCTCGAGAACATGCTACAGCGTGCGTATTTCGATCCGCGGGAAGCTTATCCGGAGGGTTCGAGCAAAGAGAAACGCCGAGCCGCCATTGCGACGGCACTGGCCGGTGAGGTGTCCGTGGTACCGTCGTCGAGACTGTTGGCCCTGCTGGGACAGGCGTTGAAATGGCAGCAGCACCAAGGATTGCTACCGCCCGGTACAACGATCGATCTGTTCCGCGGTAAGGCAGCCATCA GGGACCAGGAGGACGAATCGTACCCGACGCAGCTGGCCCGGCAGATCAAATTCGGCCAAAAGTCGCACGTGGAATGTGCACTGTTTTCACCCGACGGACAGTATCTGGTCACCGGCAGTGTGGACGGCTTCATCGAGGTGTGGAACTTTACCACCCGGCAAGATACGTAAGGATTTGAAGTACCAGGCCCAGGACAACTTCATGATGATGGAGCAAGCCATCCTGTCGATGGCGTTCTCNCGCGACTCNGAAATGCTGGCGACCGGCT]


>consensus_6527#0 CCGCCCACGCGTCCGGCGACGAAAGCAAACGATTTCGAACTGCCGCTAGCTTTTTTCCTG AATATTCTGCAAAATGTCTATTGAAATTGAATCCGCCGATGTGATCCGTCTCATTCAGCA ATACCTGAAGGAGTCCAACCTACACAAAACGCTGCAAACACTGCAGGAGGAGACGGGTGT TTCGCTCAACACGGTCGACAGCGTGGAAGGGTTCGTGTCCGACATTCACAATGGCCACTG GGACACGGTGCTGAAGGCGATCCAGTCGCTCAAGCTGCCCGACAAAAAGCTGATCGATCT GTACGAGCAGATAGTGCTGGAGCTGATTGAGCTGCGCGAGCTGGGTGCCGCCCGGTCGTT GCTGCGCCAGACGGATCCGATGATAATGCTGAAGCAGCAGGAAGCGGAACGGTACATCCA TCTCGAGAACATGCTACAGCGTGCGTATTTCGATCCGCGGGAAGCTTATCCGGAGGGTTC GAGCAAAGAGAAACGCCGAGCCGCCATTGCGACGGCACTGGCCGGTGAGGTGTCCGTGGT ACCGTCGTCGAGACTGTTGGCCCTGCTGGGACAGGCGTTGAAATGGCAGCAGCACCAAGG ATTGCTACCGCCCGGTACAACGATCGATCTGTTCCGCGGTAAGGCAGCCATCAGGGGACC AGGAGGACGAATCGTACCCGACGCAGCTGGCCCGGCAGATCAAATTCGGCCAAAAGTCGC ACGTGGAATGTGCACTGTTTTCACCCGACGGACAGTATCTGGTCACCGGCAGTGTGGACG GCTTCATCGAGGTGTGGAACTTTACCACCCGGCAAGATACGTAAGGATTTGAAGTACCAG GCCCAGGACAACTTCATGATGATGGAGCAAGCCATCCTGTCGATGGCGTTCTCNCGCGAC TCNGAAATGCTGGCGACCGGCT



consensusID : consensus_6527#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 899
fasta sequence
                              [GCAGAATCGGCACGATGACAGGCCCAGGACAACTTCATGATGATGGAGCAAGCCATCCTGTCGATGGCGTTCTCGCGCGACTCGGAAATGCTGGCGACCGGCTCGCAGGACGGACAGGCTGAAGGTGTGGAAGCTGCTTACCGGCCAGTGTTTGCGTCGGTTCGAGAAAGCTCACTCGAAGGGCGTCACCTGGTTTGCACTTTTCGCGCGACAACAGCCAAATTCTCACCGCGCTCCTTCGAGCCATCTGATCCGCCTGTACGGGCTGAAGTCGGGCAAAATGCTGAAAGAGTTTCGCGGCCACACGTCGTTCGTAAATGAGGCCGCCTTTTCGGCCGACGGTCATCACGTGCTGAGCGCCGTCGATCGGACGGNACGGTAAAGGTGTGGTCGCATCAAGACGACCGAATGCATCTCGACGGTTCAAAGCGCTCGGGTACGCACCTGGCGGTCAACNTCCGTGCTGATACTGCCAAAGAACCCGGAACACTTTGTGGTGTGCAATCGATCGAACACGGTCGTCATCATGAACATGCAGGGCCAGATCGTGCGCCCGTTCTCGTCCGGTAAGCGCGAGGGCGGTGCCTTCATCTGCGCCACGATATCGCCCCGGGGCGAGTTCATTTACTGCTGCGGTGAGGATTTGGTGCTGTACTGCTTCTCCGTGACGTCGGGCAAGCTGGAGCGTACGCTGAACGTGCACGAAAAGGACTTCATCGGGCTGACGCACCATCCGCATCAGAATCTGCTCGCATCGTACGGGTGCGATGGGTTGCTGAAGATGTGGAAACCCTAAAGAAGGTAGGGAATAGCTGGCATTAATCCGTTGGTTTGTGTGAAACAATACGCGATAGCCGCTGCTTGTGTAGTAGCATACCATACAATAAAGGACAAGCGCC]

[+] EMBL BX468428             [GCAGAATCGGCACGATGACAGGCCCAGGACAACTTCATGATGATGGAGCAAGCCATCCTGTCGATGGCGTTCTCGCGCGACTCGGAAATGCTGGCGACCGGCTCGCAGGACGGACAGGCTGAAGGTGTGGAAGCTGCTTACCGGCCAGTGTTTGCGTCGGTTCGAGAAAGCTCACTCGAAGGGCGTCACCTGGTTTGCACTTTTCGCGCGACAACAGCCAAATTCTCACCGCGCTCCTTCGAGCCATCTGATCCGCCTGTACGGGCTGAAGTCGGGCAAAATGCTGAAAGAGTTTCGCGGCCACACGTCGTTCGTAAATGAGGCCGCCTTTTCGGCCGACGGTCATCACGTGCTGAGCGCCGTCGATCGGACGGNACGGTAAAGGTGTGGTCGCATCAAGACGACCGAATGCATCTCGACGGTTCAAAGCGCTCGGGTACGCACCTGGCGGTCAACNTCCGTGCTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BX608670             [                                                                                   GGAAATGCTTGCGACCGGCTCGCAGGACGGACAGG TGAAGGTGTGGAAGCTGCTTACCGGCCAGTGTTTGCGTCGGTTCGAGAAAGCTCACTCGAAGGGCGTCACCT GTTTGCACTTTTCGCGCGACAACAGCCAAATTCTCACCGC CTCCTTCGA CCATCTGATCCGCCTGTACGGGCTGAAGTCGGGCAAAATGCTGAAAGAGTTTCGCGGCCACACGTCGTTCGTAAATGAGGCCGCCTTTTCGCCCGACGGTCATCACGTGCTGAGCGCC TC ATCGGACGGCACGGTAAAGGTGTGGTCGC TCAAGACGACCGAATGCATCTCGAC GTTCAAAGCGCTC GGTACGCACCTGGCGGTCAAC TCCGTGCTGATACTGCCAAAGAACCCGGAACACTTTGTGGTGTGCAATCGATCGAACACGGTCGTCATCATGAACATGCAGGGCCAGATCGTGCGCCCGTTCTCGTCCGGTAAGCGCGAGGGCGGTGCCTTCATCTGCGCCACGATATCGCCCCGGGGCGAGTTCATTTACTGCTGCGGTGAGGATTTGGTGCTGTACTGCTTCTCCGTGACGTCGGGCAAGCTGGAGCGTACGCTGAACGTGCACGAAAAGGACTTCATCGGGCTGACGCACCATCCGCATCAGAATCTGCTCGCATCGTACGGGTGCGATGGGTTGCTGAAGATGTGGAAACCCTAAAGAAGGTAGGGAATAGCTGGCATTAATCCGTTGGTTTGTGTGAAACAATACGCGATAGCCGCTGCTTGTGTAGTAGCATACCATACAATAAAGGACAAGCGCC]


>consensus_6527#1 GCAGAATCGGCACGATGACAGGCCCAGGACAACTTCATGATGATGGAGCAAGCCATCCTG TCGATGGCGTTCTCGCGCGACTCGGAAATGCTGGCGACCGGCTCGCAGGACGGACAGGCT GAAGGTGTGGAAGCTGCTTACCGGCCAGTGTTTGCGTCGGTTCGAGAAAGCTCACTCGAA GGGCGTCACCTGGTTTGCACTTTTCGCGCGACAACAGCCAAATTCTCACCGCGCTCCTTC GAGCCATCTGATCCGCCTGTACGGGCTGAAGTCGGGCAAAATGCTGAAAGAGTTTCGCGG CCACACGTCGTTCGTAAATGAGGCCGCCTTTTCGGCCGACGGTCATCACGTGCTGAGCGC CGTCGATCGGACGGNACGGTAAAGGTGTGGTCGCATCAAGACGACCGAATGCATCTCGAC GGTTCAAAGCGCTCGGGTACGCACCTGGCGGTCAACNTCCGTGCTGATACTGCCAAAGAA CCCGGAACACTTTGTGGTGTGCAATCGATCGAACACGGTCGTCATCATGAACATGCAGGG CCAGATCGTGCGCCCGTTCTCGTCCGGTAAGCGCGAGGGCGGTGCCTTCATCTGCGCCAC GATATCGCCCCGGGGCGAGTTCATTTACTGCTGCGGTGAGGATTTGGTGCTGTACTGCTT CTCCGTGACGTCGGGCAAGCTGGAGCGTACGCTGAACGTGCACGAAAAGGACTTCATCGG GCTGACGCACCATCCGCATCAGAATCTGCTCGCATCGTACGGGTGCGATGGGTTGCTGAA GATGTGGAAACCCTAAAGAAGGTAGGGAATAGCTGGCATTAATCCGTTGGTTTGTGTGAA ACAATACGCGATAGCCGCTGCTTGTGTAGTAGCATACCATACAATAAAGGACAAGCGCC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6527#0      CCGCCCACGCGTC-CGGCGACGAAAGCAA-ACGATTTCGAACTGCCGCTAGCTTTTTTCC 58
consensus_6527#1      --GCAGAATCGGCACGATGACAGGCCCAGGACAACTTCATGATGATGGAGCAAGCCATCC 58
                        **  *  ** * **  ***     **  ** * ***    **  *          ***

consensus_6527#0      TGAATATTCTGCAAAATGTCTATTGAAATTGAATCCGCCGATGTGATCCG-TCTCATTCA 117
consensus_6527#1      TG-----TCGATGGCGTTCTCGCGCGACTCGGAAATGCTG--GCGACCGGCTCGCAGGAC 111
                      **     **       *         * * * *   ** *  * ** * * ** **    

consensus_6527#0      GCAATACCTGAAGGAGTCCAACCTACACAAAACGCTGCAAACACTGCAGGAGGAGACGGG 177
consensus_6527#1      GGACAGGCTGAAGGTGTGGAAGCTGCTTACCGGCCAGTGTTTGCGTCGGTTCGAGAAAGC 171
                      * *    ******* **  ** ** *  *     * *      *  * *   ****  * 

consensus_6527#0      TGTTTCGCTCAACACGGTCGACAGCGTGGAAGGGTTCGTGTC-CGACATTCACAATGGCC 236
consensus_6527#1      TCACTCG---AAGGGCGTCACCTGGTTTGCACTTTTCGCGCGACAACAGCCA-AATTCTC 227
                      *   ***   **    ***  * *  * * *   **** *   * ***  ** ***   *

consensus_6527#0      ACTGGGACACGGTGCTGAAGGCGATCCAGTCGCTCAAGCTG---CCCGACAAAAAGCTGA 293
consensus_6527#1      ACCGCGCTCCTTCGAGCCATCTGATCCGCCTGTACGGGCTGAAGTCGGGCAAAATGCTGA 287
                      ** * *   *   *    *   *****    *  *  ****    * * ***** *****

consensus_6527#0      TCGATCTGTACGAGCAGATAGTGCTGG-AGCTGATTGAGCTGCGCGAGCTGGGTGCCGCC 352
consensus_6527#1      AAGAGTTTCGCGGCCACACGTCGTTCGTAAATGAGGCCGCCTTTTCGGCCGACGGTCATC 347
                        **  *   **  ** *    * * * *  ***    **       ** *   * *  *

consensus_6527#0      CGGTCGTTGCTGC-GCCAGACGGATCCGATGATAATGCTGAAGCAGCAGGAAGCGGAACG 411
consensus_6527#1      ACGTGCTGAGCGCCGTCGATCGGACGGNACGGTAAAGGTGTGGTCGCATCAAGACGACCG 407
                        **  *    ** * *   ****    * * *** * **  *  ***  ***  ** **

consensus_6527#0      GTACATCCATCTCGAGAACATGCTACAGCGTGCGTATTTCGATCCGCGGGAAGCTTATCC 471
consensus_6527#1      A---ATGCATCTCG---ACGGTTCAAAGCGCTCGGGTACGCACCTGGCGGTCAACNTCCG 461
                          ** *******   **     * ****  **  *    * * *  **        * 

consensus_6527#0      GGAGGGTTCGAGCAAAGAGAAACGCCGAGCCGCCATTGCGACGGCACTGGCCGGTGAGGT 531
consensus_6527#1      TGCTGATACTGCCAAAGA---ACCCGGAACACTTTGTGGTGTGCAATCGATCGA--ACAC 516
                       *  * * *   ******   ** * ** *      **    *  *  *  **   *   

consensus_6527#0      GTCCGTGGTACCGTCGTCGAGACTGTTGGCCCTGCTGGGACAGGCGTTGAAATGGCAGCA 591
consensus_6527#1      GGTCGT-----CATCAT-GAACATGCAGGGCCAGATCGTGCGCCCGTTCTCGTCCGGTAA 570
                      *  ***     * ** * **   **  ** ** * * *  *   ****    *      *

consensus_6527#0      GCACCAAGG-ATTGCTACCGCCCGGTACAACGATCGATCTGTTCCGCGGTAAGGCAGCCA 650
consensus_6527#1      GCGCGAGGGCGGTGCCTTCATCTG-CGCCACGAT--ATC-GCCCCGGGGCGAGTTCATTT 626
                      ** * * **   ***   *  * *   * *****  *** *  *** **  **       

consensus_6527#0      TCAGGGGACCAGGAGGACGAATCGTACCCGACGCAGCTGGCCCGGCAGATCAAATTCGGC 710
consensus_6527#1      ACTG----CTGCGGTGAGGATTTG-GTGCTGTACTGCTTCTCCGTGACGTCGGGCA-AGC 680
                       * *    *   *  ** ** * *    *    * ***   ***  *  **       **

consensus_6527#0      CAAAAGTCGCACGTGGAATGTGCACT-----GTTTTCACCCGACGGACAGTATCTGGTCA 765
consensus_6527#1      TGGAG--CGTACGCTGAACGTGCACGAAAAGGACTTCATCGGGCTGACGCACCATCCGCA 738
                         *   ** ***  *** ******      *  **** * * * ***      *   **

consensus_6527#0      CCGGCAGTGTGGACGGCTTCATCGAGGTGTGGAACTTTACC----ACCCGGCAAGATACG 821
consensus_6527#1      TCAG-AATCTGCTCG-CATCGTACGGGTGCGATGGGTTGCTGAAGATGTGGAAACCCTAA 796
                       * * * * **  ** * ** *   **** *     ** *     *   ** **      

consensus_6527#0      TAAGGATTTGAAGTACCAGGCCCAGGACAACT--TCATGATGATGGAGCAAGCCATC-CT 878
consensus_6527#1      AGAAGGTAGGGAATAGCTGGCATTAATCCGTTGGTTTGTGTGAAACAATACGCGATAGCC 856
                        * * *  * * ** * ***      *   *  *     ***   *  * ** **  * 

consensus_6527#0      GTCGATGGCGTTCTCNCGCGACTCNGAAATGCTGGCGACCGGCT 922
consensus_6527#1      GCTGCTTGTGTAGTAGCATACCATACAATAAAGGACAAGCGCC- 899
                      *  * * * **  *  *    *    **     * * * ** * 




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)