These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6527#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 922 fasta sequence [CCGCCCACGCGTCCG-GCGACGAAAGCAAACGATTTCGAACTGCCGCTAGCTTTTTTCCTGAATATTCTGCAAAATGTCTATTGAAATTGAATCCGCCGATGTGATCCGTCTCATTCAGCAATACCTGAAGGAGTCCAACCTACACAAAACGCTGCAAACACTGCAGGAGGAGACGGGTGTTTCGCTCAACACGGTCGACAGCGTGGAAGGGTTCGTGTCCGACATTCACAATGGCCACTGGGACACGGTGCTGAAGGCGATCCAGTCGCTCAAGCTGCCCGACAAAAAGCTGATCGATCTGTACGAGCAGATAGTGCTGGAGCTGATTGAGCTGCGCGAGCTGGGTGCCGCCCGGTCGTTGCTGCGCCAGACGGATCCGATGATAATGCTGAAGCAGCAGGAAGCGGAACGGTACATCCATCTCGAGAACATGCTACAGCGTGCGTATTTCGATCCGCGGGAAGCTTATCCGGAGGGTTCGAGCAAAGAGAAACGCCGAGCCGCCATTGCGACGGCACTGGCCGGTGAGGTGTCCGTGGTACCGTCGTCGAGACTGTTGGCCCTGCTGGGACAGGCGTTGAAATGGCAGCAGCACCAAGGATTGCTACCGCCCGGTACAACGATCGATCTGTTCCGCGGTAAGGCAGCCATCAGGGGACCAGGAGGACGAATCGTACCCGACGCAGCTGGCCCGGCAGATCAAATTCGGCCAAAAGTCGCACGTGGAATGTGCACTGTTTTCACCCGACGGACAGTATCTGGTCACCGGCAGTGTGGACGGCTTCATCGAGGTGTGGAACTTTACCACCCGGCAAGATACGTAAGGATTTGAAGTACCAGGCCCAGGACAACTTCATGATGATGGAGCAAGCCATCCTGTCGATGGCGTTCTCNCGCGACTCNGAAATGCTGGCGACCGGCT] [+] EMBL BM578972 [CCGCCCACGCGTCCG GCGACGAAAGCAAACGATTTCGAACTGCCGCTAGCTTTTTTCCTGAATATTCTGCAAAATGTCTATTGAAATTGAATCCGCCGATGTGATCCGTCTCATTCAGCAATACCTGAAGGAGTCCAACCTACACAAAACGCTGCAAACACTGCAGGAGGAGACGGGTGTTTCGCTCAACACGGTCGACAGCGTGGAAGGGTTCGTGTCCGACATTCACAATGGCCACTGGGACACGGTGCTGAAGGCGATCCAGTCGCTCAAGCTGCCCGACAAAAAGCTGATCGATCTGTACGAGCAGATAGTGCTGGAGCTGATTGAGCTGCGCGAGCTGGGTGCCGCCCGGTCGTTGCTGCGCCAGACGGATCCGATGATAATGCTGAAGCAGCAGGAAGCGGAACGGTACATCCATCTCGAGAACATGCTACAGCGTGCGTATTTCGATCCGCGGGAAGCTTATCCGGAGGGTTCGAGCAAAGAGAAACGCCGAGCCGCCATTGCGACGGCACTGGCCGGTGAGGTGTCCGTGGTACCGTCGTCGAGACTGTTGGCCCTGCTGGGACAGGCGTTGAAATGGCAGCAGCACCAAGGATTGCTACCGCCCGGTACAACGATCGATCTGTTCCGCGGTAAGGCAGCCATCAGGGGACCAGG ] [+] EMBL BM582308 [ CCGCGCGACGAAAGCAAACGATTTCGAACTGCCGCTAGCTTTTTTCCTGAATATTCTGCAAAATGTCTATTGAAATTGAATCCGCCGATGTGATCCGTCTCATTCAGCAATACCTGAAGGAGTCCAACCTACACAAAACGCTGCAAACACTGCAGGAGGAGACGGGTGTTTCGCTCAACACGGTCGACAGCGTGGAAGGGTTCGTGTCCGACATTCACAATGGCCACTGGGACACGGTGCTGAAGGCGATCCAGTCGCTCAAGCTGCCCGACAAAAAGCTGATCGATCTGTACGAGCAGATAGTGCTGGAGCTGATTGAGCTGCGCGAGCTGGGTGCCGCCCGGTCGTTGCTGCGCCAGACGGATCCGATGATAATGCTGAAGCAGCAGGAAGCGGAACGGTACATCCATCTCGAGAACATGCTACAGCGTGCGTATTTCGATCCGCGGGAAGCTTATCCGGAGGGTTCGAGCAAAGAGAAACGCCGAGCCGCCATTGCGACGGCACTGGCCGGTGAGGTGTCCGTGGTACCGTCGTCGAGACTGTTGGCCCTGCTGGGACAGGCGTTGAAATGGCAGCAGCACCAAGGATTGCTACCGCCCG ] [+] EMBL BX621325 [ ACTGCCGCTAG TTTTTTCCTGAATATTCTGCAAAATGTCTATTGAAATTGAATCCGCCGATGTGATCCGTCTCATTCAGCAATACCTGAAGGAGTCCAACCTACACAAAACGCTGCAAACACTGCAGGAGGAGACGGGTGTTTCGCTCAACACGGTCGACAGCGTGGAAGGGTTCGTGTCCGACATTCACAATGGCCACTGGGACACGGTGCTGAAGGCGATCCAGTCGCTCAAGCTGCCCGACAAAAAGCTGATCGATCTGTACGAGCAGATAGTGCTGGAGCTGATTGAGCTGCGCGAGCTGGGTGCCGCCCGGTCGTTGCTGCGCCAGACGGATCCGATGATAATGCTGAAGCAGCAGGAAGCGGAACGGTACATCCATCTCGAGAACATGCTACAGCGTGCGTATTTCGATCCGCGGGAAGCTTATCCGGAGGGTTCGAGCAAAGAGAAACGCCGAGCCGCCATTGCGACGGCACTGGCCGGTGAGGTGTCCGTGGTACCGTCGTCGAGACTGTTGGCCCTGCTGGGACAGGCGTTGAAATGGCAGCAGCACCAAGGATTGCTACCGCCCGGTACAACGATCGATCTGTTCCGCGGTAAGGCAGCCATCA GGGACCAGGAGGACGAATCGTACCCGACGCAGCTGGCCCGGCAGATCAAATTCGGCCAAAAGTCGCACGTGGAATGTGCACTGTTTTCACCCGACGGACAGTATCTGGTCACCGGCAGTGTGGACGGCTTCATCGAGGTGTGGAACTTTACCACCCGGCAAGATACGTAAGGATTTGAAGTACCAGGCCCAGGACAACTTCATGATGATGGAGCAAGCCATCCTGTCGATGGCGTTCTCNCGCGACTCNGAAATGCTGGCGACCGGCT] consensusID : consensus_6527#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 899 fasta sequence [GCAGAATCGGCACGATGACAGGCCCAGGACAACTTCATGATGATGGAGCAAGCCATCCTGTCGATGGCGTTCTCGCGCGACTCGGAAATGCTGGCGACCGGCTCGCAGGACGGACAGGCTGAAGGTGTGGAAGCTGCTTACCGGCCAGTGTTTGCGTCGGTTCGAGAAAGCTCACTCGAAGGGCGTCACCTGGTTTGCACTTTTCGCGCGACAACAGCCAAATTCTCACCGCGCTCCTTCGAGCCATCTGATCCGCCTGTACGGGCTGAAGTCGGGCAAAATGCTGAAAGAGTTTCGCGGCCACACGTCGTTCGTAAATGAGGCCGCCTTTTCGGCCGACGGTCATCACGTGCTGAGCGCCGTCGATCGGACGGNACGGTAAAGGTGTGGTCGCATCAAGACGACCGAATGCATCTCGACGGTTCAAAGCGCTCGGGTACGCACCTGGCGGTCAACNTCCGTGCTGATACTGCCAAAGAACCCGGAACACTTTGTGGTGTGCAATCGATCGAACACGGTCGTCATCATGAACATGCAGGGCCAGATCGTGCGCCCGTTCTCGTCCGGTAAGCGCGAGGGCGGTGCCTTCATCTGCGCCACGATATCGCCCCGGGGCGAGTTCATTTACTGCTGCGGTGAGGATTTGGTGCTGTACTGCTTCTCCGTGACGTCGGGCAAGCTGGAGCGTACGCTGAACGTGCACGAAAAGGACTTCATCGGGCTGACGCACCATCCGCATCAGAATCTGCTCGCATCGTACGGGTGCGATGGGTTGCTGAAGATGTGGAAACCCTAAAGAAGGTAGGGAATAGCTGGCATTAATCCGTTGGTTTGTGTGAAACAATACGCGATAGCCGCTGCTTGTGTAGTAGCATACCATACAATAAAGGACAAGCGCC] [+] EMBL BX468428 [GCAGAATCGGCACGATGACAGGCCCAGGACAACTTCATGATGATGGAGCAAGCCATCCTGTCGATGGCGTTCTCGCGCGACTCGGAAATGCTGGCGACCGGCTCGCAGGACGGACAGGCTGAAGGTGTGGAAGCTGCTTACCGGCCAGTGTTTGCGTCGGTTCGAGAAAGCTCACTCGAAGGGCGTCACCTGGTTTGCACTTTTCGCGCGACAACAGCCAAATTCTCACCGCGCTCCTTCGAGCCATCTGATCCGCCTGTACGGGCTGAAGTCGGGCAAAATGCTGAAAGAGTTTCGCGGCCACACGTCGTTCGTAAATGAGGCCGCCTTTTCGGCCGACGGTCATCACGTGCTGAGCGCCGTCGATCGGACGGNACGGTAAAGGTGTGGTCGCATCAAGACGACCGAATGCATCTCGACGGTTCAAAGCGCTCGGGTACGCACCTGGCGGTCAACNTCCGTGCTGA ] [+] EMBL BX608670 [ GGAAATGCTTGCGACCGGCTCGCAGGACGGACAGG TGAAGGTGTGGAAGCTGCTTACCGGCCAGTGTTTGCGTCGGTTCGAGAAAGCTCACTCGAAGGGCGTCACCT GTTTGCACTTTTCGCGCGACAACAGCCAAATTCTCACCGC CTCCTTCGA CCATCTGATCCGCCTGTACGGGCTGAAGTCGGGCAAAATGCTGAAAGAGTTTCGCGGCCACACGTCGTTCGTAAATGAGGCCGCCTTTTCGCCCGACGGTCATCACGTGCTGAGCGCC TC ATCGGACGGCACGGTAAAGGTGTGGTCGC TCAAGACGACCGAATGCATCTCGAC GTTCAAAGCGCTC GGTACGCACCTGGCGGTCAAC TCCGTGCTGATACTGCCAAAGAACCCGGAACACTTTGTGGTGTGCAATCGATCGAACACGGTCGTCATCATGAACATGCAGGGCCAGATCGTGCGCCCGTTCTCGTCCGGTAAGCGCGAGGGCGGTGCCTTCATCTGCGCCACGATATCGCCCCGGGGCGAGTTCATTTACTGCTGCGGTGAGGATTTGGTGCTGTACTGCTTCTCCGTGACGTCGGGCAAGCTGGAGCGTACGCTGAACGTGCACGAAAAGGACTTCATCGGGCTGACGCACCATCCGCATCAGAATCTGCTCGCATCGTACGGGTGCGATGGGTTGCTGAAGATGTGGAAACCCTAAAGAAGGTAGGGAATAGCTGGCATTAATCCGTTGGTTTGTGTGAAACAATACGCGATAGCCGCTGCTTGTGTAGTAGCATACCATACAATAAAGGACAAGCGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6527#0 CCGCCCACGCGTC-CGGCGACGAAAGCAA-ACGATTTCGAACTGCCGCTAGCTTTTTTCC 58 consensus_6527#1 --GCAGAATCGGCACGATGACAGGCCCAGGACAACTTCATGATGATGGAGCAAGCCATCC 58 ** * ** * ** *** ** ** * *** ** * *** consensus_6527#0 TGAATATTCTGCAAAATGTCTATTGAAATTGAATCCGCCGATGTGATCCG-TCTCATTCA 117 consensus_6527#1 TG-----TCGATGGCGTTCTCGCGCGACTCGGAAATGCTG--GCGACCGGCTCGCAGGAC 111 ** ** * * * * * ** * * ** * * ** ** consensus_6527#0 GCAATACCTGAAGGAGTCCAACCTACACAAAACGCTGCAAACACTGCAGGAGGAGACGGG 177 consensus_6527#1 GGACAGGCTGAAGGTGTGGAAGCTGCTTACCGGCCAGTGTTTGCGTCGGTTCGAGAAAGC 171 * * ******* ** ** ** * * * * * * * **** * consensus_6527#0 TGTTTCGCTCAACACGGTCGACAGCGTGGAAGGGTTCGTGTC-CGACATTCACAATGGCC 236 consensus_6527#1 TCACTCG---AAGGGCGTCACCTGGTTTGCACTTTTCGCGCGACAACAGCCA-AATTCTC 227 * *** ** *** * * * * * **** * * *** ** *** * consensus_6527#0 ACTGGGACACGGTGCTGAAGGCGATCCAGTCGCTCAAGCTG---CCCGACAAAAAGCTGA 293 consensus_6527#1 ACCGCGCTCCTTCGAGCCATCTGATCCGCCTGTACGGGCTGAAGTCGGGCAAAATGCTGA 287 ** * * * * * ***** * * **** * * ***** ***** consensus_6527#0 TCGATCTGTACGAGCAGATAGTGCTGG-AGCTGATTGAGCTGCGCGAGCTGGGTGCCGCC 352 consensus_6527#1 AAGAGTTTCGCGGCCACACGTCGTTCGTAAATGAGGCCGCCTTTTCGGCCGACGGTCATC 347 ** * ** ** * * * * * *** ** ** * * * * consensus_6527#0 CGGTCGTTGCTGC-GCCAGACGGATCCGATGATAATGCTGAAGCAGCAGGAAGCGGAACG 411 consensus_6527#1 ACGTGCTGAGCGCCGTCGATCGGACGGNACGGTAAAGGTGTGGTCGCATCAAGACGACCG 407 ** * ** * * **** * * *** * ** * *** *** ** ** consensus_6527#0 GTACATCCATCTCGAGAACATGCTACAGCGTGCGTATTTCGATCCGCGGGAAGCTTATCC 471 consensus_6527#1 A---ATGCATCTCG---ACGGTTCAAAGCGCTCGGGTACGCACCTGGCGGTCAACNTCCG 461 ** ******* ** * **** ** * * * * ** * consensus_6527#0 GGAGGGTTCGAGCAAAGAGAAACGCCGAGCCGCCATTGCGACGGCACTGGCCGGTGAGGT 531 consensus_6527#1 TGCTGATACTGCCAAAGA---ACCCGGAACACTTTGTGGTGTGCAATCGATCGA--ACAC 516 * * * * ****** ** * ** * ** * * * ** * consensus_6527#0 GTCCGTGGTACCGTCGTCGAGACTGTTGGCCCTGCTGGGACAGGCGTTGAAATGGCAGCA 591 consensus_6527#1 GGTCGT-----CATCAT-GAACATGCAGGGCCAGATCGTGCGCCCGTTCTCGTCCGGTAA 570 * *** * ** * ** ** ** ** * * * * **** * * consensus_6527#0 GCACCAAGG-ATTGCTACCGCCCGGTACAACGATCGATCTGTTCCGCGGTAAGGCAGCCA 650 consensus_6527#1 GCGCGAGGGCGGTGCCTTCATCTG-CGCCACGAT--ATC-GCCCCGGGGCGAGTTCATTT 626 ** * * ** *** * * * * ***** *** * *** ** ** consensus_6527#0 TCAGGGGACCAGGAGGACGAATCGTACCCGACGCAGCTGGCCCGGCAGATCAAATTCGGC 710 consensus_6527#1 ACTG----CTGCGGTGAGGATTTG-GTGCTGTACTGCTTCTCCGTGACGTCGGGCA-AGC 680 * * * * ** ** * * * * *** *** * ** ** consensus_6527#0 CAAAAGTCGCACGTGGAATGTGCACT-----GTTTTCACCCGACGGACAGTATCTGGTCA 765 consensus_6527#1 TGGAG--CGTACGCTGAACGTGCACGAAAAGGACTTCATCGGGCTGACGCACCATCCGCA 738 * ** *** *** ****** * **** * * * *** * ** consensus_6527#0 CCGGCAGTGTGGACGGCTTCATCGAGGTGTGGAACTTTACC----ACCCGGCAAGATACG 821 consensus_6527#1 TCAG-AATCTGCTCG-CATCGTACGGGTGCGATGGGTTGCTGAAGATGTGGAAACCCTAA 796 * * * * ** ** * ** * **** * ** * * ** ** consensus_6527#0 TAAGGATTTGAAGTACCAGGCCCAGGACAACT--TCATGATGATGGAGCAAGCCATC-CT 878 consensus_6527#1 AGAAGGTAGGGAATAGCTGGCATTAATCCGTTGGTTTGTGTGAAACAATACGCGATAGCC 856 * * * * * ** * *** * * * *** * * ** ** * consensus_6527#0 GTCGATGGCGTTCTCNCGCGACTCNGAAATGCTGGCGACCGGCT 922 consensus_6527#1 GCTGCTTGTGTAGTAGCATACCATACAATAAAGGACAAGCGCC- 899 * * * * ** * * * ** * * * ** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||