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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6538#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 798 fasta sequence
[AAGAATNGCCCGAGGTGTTTCCATACTCGTTCAGTAAGTTCCGACATACGATGGGAAAGGTGTTGATTCTTGTTCGTCGGTGCGCTCGTAGTGGCCAGTGTCACAGCAGGACGATTTGAGCGATCGGTTTTTTGCGCCGAGGATAAAGCGCGATGCCACGATGCGCTGCTGTAACGATGGATTCGAAAAGAGTGAAGTGCATGCCAAGTTCGCTGAAGTCCTGGACTGCCTGCATGGAGTGAGCTTGTGTCTGGGTGAAACCACTCATGAAGAGCTGATCAAAAACCGAGAACATCTGAACTGCATCACCGAGTGTATCTGCCAAGAAGGATGGGCATTGCTTGACTGATGAACTGGCNGCTCTGCTGCACACCTGACCTCGCCAAGGTAGTGCTGGAGCACATGAGCACCATCGAGTGGAAGTGTACCTGCTGGCTGGAATTGCTTCATCCAGCAGTGCTTCGACGAGGTTGAGCTAACGGACGGTGCCTTCGTACCGAGCGACTGAGGCAAAGTTGCAACCCTGGAAGGGTTCGATTATTGTGTATTATGCCTGTGGCTGTCAGTTTACCCTAGCCTGTCCGGAGGAGTTCCGTGGACGATTCGGAGAAGTTGCAGTCGAGCTTGCGGGGACAAGCTCACGAAACAAGCAGGACNGTGANGCGAATGNCACTGATGATNTAGCANGCCGNCCNGAGTAGGGGCGGCTAGCTGTGTGCGCGCGCCTAAATGTATGCAACCGCACATGNACCCGNACTAATGCTGTNNNCTGAAAAAAGATAAACCTACGGAAAGGNA]
[+] EMBL AL931170 [AAGAATNGCCCGAGGTGTTTCCATACTCGTTCAGTAAGTTCCGACATACGATGGGAAAGGTGTTGATTCTTGTTCGTCGGTGCGCTCGTAGTGGCCAGTGTCACAGCAGGACGATTTGAGCGATCGGTTTTTTGCGCCGAGGATAAAGCGCGATGCCACGATGCGCTGCTGTAACGATGGATTCGAAAAGAGTGAAGTGCATGCCAAGTTCGCTGAAGTCCTGGACTGCCTGCATGGAGTGAGCTTGTGTCTGGGTGAAACCACTCATGAAGAGCTGATCAAAAACCGAGAACATCTGAACTGCATCACCGAGTGTATCTGCCAAGAAGGATGGGCATTGCTTGACTGATGAACTGGCNGCTCTGCTGCACACCTGACCTCGCCAAGGTAGTGCTGGAGCACATGAGCACCATCGAGTGGAAGTGTACCTGCTGGCTGGAATTGCTTCATCCAGCAGTGCTTCGACGAGGTTGAGCTAACGGACGGTGCCTTCGTACCGAGCGACTGAGGCAAAGTTGCAACCCTGGAAGGGTTCGATTATTGTGTATTATGCCTGTGGCTGTCAGTTTACCCTAGCCTGTCCGGAGGAGTTCCGTGGACGATTCGGAGAAGTTGCAGTCGAGCTTGCGGGGACAAGCTCACGAAACAAGCAGGACNGTGANGCGAATGNCACTGATGATNTAGCANGCCGNCCNGAGTAGGGGCGGCTAGCTGTGTGCGCGCGCCTAAATGTATGCAACCGCACATGNACCCGNACTAATGCTGTNNNCTGAAAAAAGATAAACCTACGGAAAGGNA]
consensusID : consensus_6538#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 767 fasta sequence
[CAAGAATCCGCACGACGCGTTCAGTAAGTTCAGACATACGATGGGAAAGGTGTTGATTCTGTTCGTCGGTGCGCTCGTAGTGGCCAGTGTCGCAGCAGGACGATTCGAGCGATCGGTTTTTGCGCCGAGGATAAAGCGCGATGCCACGATGCGCTGTTGTAACGATGGATTCGAAAAGAGTGAAGTACATGCCAAGTTCGCTGAAGTCCGGACGGCCTGCATGGAGGAGCTTGGTCTGGGTGAAACCACTCATGAAGAACTGATCAAAAACCGAGAACATCTGAACTGCATCACCGAGTGTATCGCCAAGAAGGAGGGCATTGCGGACGAGAACGGCGCACTGCTGCACACCGACCTCGCCAAGGTAGTGCTGGAGCACATGAGCACCATCGAGTGGAAGGTACCGCTGGCGGAAGGCTTCATCCAGCAGTGCTTCGACGAGGTTGAGCTAACGGACGGTGCCTTCGTACCGAGCGACGAGGCAAAGTGCAACCCGGAAGGGTTCGACTTTGTGTTCTGCCTGTGGCGTCAGTTTACCCTAGCCTGTCCGGAGGAGTTCCGGGACGATTC-GGAGAAGTGCGTCGAGCTGCGGGACAAGCTCACGAACAAGGAGGACGTGAGCGACTTGCACGATG-ATATAGAGGCGGCGGANTTGGGCGGCTAGCTGTGTGCGCGCGCCTAGATGTATGCAACCGGAATGACACCGACCTAATGCTGCTGCTGGAGAAAAGATTTAAACTTACGGTTAGGTATCCGTTGCAAACGGA]
[+] EMBL BX468203 [CAAGAATCCGCACGATGNGTTCAGTAAG TCAGACATACGATGGGAAAGGTGTTGATTCTGTTCGTCGGTGCGCTCGTAGTGGCCAGTGTCGCAGCAGGACGATTCGAGCGATCGGTTTTTGCGCCGAGGATAAAGCGCGATGCCACGATGCGCTGTTGTAACGATGGATTCGAAAAGAGTGAAGTACATGCCAAGTTCGCTGAAGTCCGGACGGCCTGCATGGAGGAGCTTGGTCTGGGTGAAACCACTCATGAAGAACTGATCAAAAACCGAGAACATCTGAACTGCATCACCGAGTGTATCGCCAAGAAGGAGGGCATTGCGGACGAGAACGGCGCACTGCTGCACACCGACCTCGCCAAGGTAGTGCTGGAGCACATGAGCACCATCGAGTGGAAGGTACCGCTGGCGGAAGGCTTCATCCAGCAGTGCTTCGACGAGGTTGAGCTAACGGACGGTGCCTTCGTACCGAGCGACGAGGCAAAGTGCAACCCGGAAGGGTTCGACTTTGTGTTCTGCCTGTGGCGTCAGTTTACCCTAGCCTGTCCGGAGGAGTTCCGGGACGATTCGGGAGAAGTGCGTCGAGCTGCGGGACAAGCTCACGAACAAGGAGGACGTGAGCGACTTGCACGATGAATATAGAGGCGGCGGANTT ]
[+] EMBL BM611775 [ cCGCGTTCAGTAAGTTCCGACATACGATGGGAAAGGTGTTGATTCTGTTCGTCGGTGCGCTCGTAGTGGCCAGTGTCACAGCAGGACGATTTGAGCGATCGGTTTTTGCGCCGAGGATAAAGCGCGATGCCACGATGCGCTGCTGTAACGATGGATTCGAAAAGAGTGAAGTGCATGCCAAGTTCGCTGAAGTCCGGACTGCCTGCATGGAGGAGCTTGGTCTGGGTGAAACCACTCATGAAGAGCTGATCAAAAACCGAGAACATCTGAACTGCATCACCGAGTGTATCGCCAAGAAGGAGGGCATTGCGGACGAGAACGGCGCTCTGCTGCACACCGACCTCGCCAAGGTAGTGCTGGAGCACATGAGCACCATCGAGTGGAAGGTACCGCTGGCGGAAGGCTTCATCCAGCAGTGCTTCGACGAGGTTGAGCTAACGGACGGTGCCTTCGTACCGAGCGACGAGGCAAAGTGCAACCCGGAAGGGTTC ]
[+] EMBL BM607570 [ ccgctCGTTCAGTAAGTTCAGACATACGATGGGAAAGGTGTTGATTCTGTTCGTCGGTGCGCTCGTAGTGGCCAGTGTCGCAGCAGGACGATTCGAGCGATCGGTTTTTGCGCCGAGGATAAAGCGCGATGCCACGATGCGCTGTTGTAACGATGGATTCGAAAAGAGTGAAGTACATGCCAAGTTCGCTGAAGTCCGGACGGCCTGCATGGAGGAGCTTGGTCTGGGTGAAACCACTCATGAAGAACTGATCAAAAACCGAGAACATCTGAACTGCATCACCGAGTGTATCGCCAAGAAGGAGGGCATTGCGGACGAGAACGGCGCACTGCTGCACACCGACCTCGCCAAGGTAGTGCTGGAGCACATGAGCACCATCGAGTGGAAGGTACCGCTGGCGGAAGGCTTCATCCAGCAGTGCTTCGACGAGGTTGAGCTAACGGACGGTGCCTTCGTACCGAGCGACGAGGCAAAGTGCAACCCGGAAGGGTTCGACTTTGTGTTCTGCCTGTGGCGTCAGTTTACCCTAGCCTGTCCGGAGGAGTTCCGGGACGATTC GGAGAAGTGCGTCGAGCTGCGGGACAAGCTCACGAACAAGGAGGACGTGAGCGACTTGCACGATG ATATAGAGGCGG ]
[+] EMBL BM624416 [ ccgTGGATTCGAAAAGAGTGAAGTGCATGCCAAGTTCGCTGAAGTCCGGACTGCCTGCATGGAGGAGCTTGGTCTGGGTGAAACCACTCATGAAGAGCTGATCAAAAACCGAGAACATCTGAACTGCATCACCGAGTGTATCGCCAAGAAGGAGGGCATTGCGGACGAGAACGGCGCTCTGCTGCACACCGACCTCGCCAAGGTAGTGCTGGAGCACATGAGCACCATCGAGTGGAAGGTACCGCTGGCGGAAGGCTTCATCCAGCAGTGCTTCGACGAGGTTGAGCTAACGGACGGTGCCTTCGTACCGAGCGACGAGGCAAAGTGCAACCCGGAAGGGTTCGATTTTGTGTTTTGCCTGTGGCGTCAGTTTACCCTAGCCTGTCCGGAGGAGTTCCGGGACGATTC GGAGAAGTGCGTCGAGCTGCGGGACAAGCTCACGAACAAGGAGGACGTGAGCGACTTGCACGATG ATATAGAGGCGGCCGAGTAGGGCGGCTAGCTGTGTGCGCGCGCCTAGATGTATGCAACCGGAATGACACCGACCTAATGCTGCTGCTGGAGAAAAGATTTAAACTTACGGTTAGGTATCCGTTGCAAACGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6538#0 AAGAATNGCCCGAGGTGTTTCCATACTCGTTCAGTAAGTTCCGACATACGATGGGAAAGG 60
consensus_6538#1 ----------CAAGAATCCGCACGACGCGTTCAGTAAGTTCAGACATACGATGGGAAAGG 50
* ** * ** ************** ******************
consensus_6538#0 TGTTGATTCTTGTTCGTCGGTGCGCTCGTAGTGGCCAGTGTCACAGCAGGACGATTTGAG 120
consensus_6538#1 TGTTGATTCT-GTTCGTCGGTGCGCTCGTAGTGGCCAGTGTCGCAGCAGGACGATTCGAG 109
********** ******************************* ************* ***
consensus_6538#0 CGATCGGTTTTTTGCGCCGAGGATAAAGCGCGATGCCACGATGCGCTGCTGTAACGATGG 180
consensus_6538#1 CGATCGGTTTTT-GCGCCGAGGATAAAGCGCGATGCCACGATGCGCTGTTGTAACGATGG 168
************ *********************************** ***********
consensus_6538#0 ATTCGAAAAGAGTGAAGTGCATGCCAAGTTCGCTGAAGTCCTGGACTGCCTGCATGGAGT 240
consensus_6538#1 ATTCGAAAAGAGTGAAGTACATGCCAAGTTCGCTGAAGTCC-GGACGGCCTGCATGGAG- 226
****************** ********************** **** ************
consensus_6538#0 GAGCTTGTGTCTGGGTGAAACCACTCATGAAGAGCTGATCAAAAACCGAGAACATCTGAA 300
consensus_6538#1 GAGCTTG-GTCTGGGTGAAACCACTCATGAAGAACTGATCAAAAACCGAGAACATCTGAA 285
******* ************************* **************************
consensus_6538#0 CTGCATCACCGAGTGTATCTGCCAAGAAGGATGGGCATTGCTTGACTGATGAACTGGCNG 360
consensus_6538#1 CTGCATCACCGAGTGTATC-GCCAAGAAGGA-GGGCATTGCG-----GACGAGAACGGCG 338
******************* *********** ********* ** ** * *
consensus_6538#0 CTCTGCTGCACACCTGACCTCGCCAAGGTAGTGCTGGAGCACATGAGCACCATCGAGTGG 420
consensus_6538#1 CACTGCTGCACACC-GACCTCGCCAAGGTAGTGCTGGAGCACATGAGCACCATCGAGTGG 397
* ************ *********************************************
consensus_6538#0 AAGTGTACCTGCTGGCTGGAATTGCTTCATCCAGCAGTGCTTCGACGAGGTTGAGCTAAC 480
consensus_6538#1 AAG-GTACC-GCTGGCGGAAG--GCTTCATCCAGCAGTGCTTCGACGAGGTTGAGCTAAC 453
*** ***** ****** * * *************************************
consensus_6538#0 GGACGGTGCCTTCGTACCGAGCGACTGAGGCAAAGTTGCAACCCTGGAAGGGTTCGATTA 540
consensus_6538#1 GGACGGTGCCTTCGTACCGAGCGAC-GAGGCAAAGT-GCAACCC-GGAAGGGTTCGACTT 510
************************* ********** ******* ************ *
consensus_6538#0 TTGTGTATTATGCCTGTGGCTGTCAGTTTACCCTAGCCTGTCCGGAGGAGTTCCGTGGAC 600
consensus_6538#1 T---GTGTTCTGCCTGTGGC-GTCAGTTTACCCTAGCCTGTCCGGAGGAGTTCCG-GGAC 565
* ** ** ********** ********************************** ****
consensus_6538#0 GATTCGGAGAAGTTGCAGTCGAGCTTGCGGGGACAAGCTCACGAAACAAGCAGGACNGTG 660
consensus_6538#1 GATTCGGAGAAGT-GC-GTCGAGCT-GCGGG-ACAAGCTCACGAA-CAAGGAGGACGT-- 618
************* ** ******** ***** ************* **** *****
consensus_6538#0 ANGCGAATGNCACTGATGATNTAGCANGCCGNCCNGAGTAGGGGCGGCTAGCTGTGTGCG 720
consensus_6538#1 GAGCGACTTGCAC-GATGATATAG--AGGCGGCGGANTT--GGGCGGCTAGCTGTGTGCG 673
**** * *** ****** *** * ** * * *******************
consensus_6538#0 CGCGCCTAAATGTATGCAACCGCACATGNACCCGNACTAATGCTGTNNNCTGAAAAAAGA 780
consensus_6538#1 CGCGCCTAGATGTATGCAACCGGA-ATGACACCGACCTAATGCTGCTGCTGGAGAAAAGA 732
******** ************* * *** *** ********* ** ******
consensus_6538#0 T--AAACCTACGGAAAGGNA--------------- 798
consensus_6538#1 TTTAAACTTACGGTTAGGTATCCGTTGCAAACGGA 767
* **** ***** *** *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||