These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6544#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 961 fasta sequence [CCGGCCTGTTGAAAGGTTCGCACACTGTCCTTCTTGGAGGTGTTTGTTGTTGCTGGTGGTGGTTGGAGGCTCACACAAAAAAGAAGAAGAACAATCAAAATTTAACAGTGACAATGCATGTGCAATGGATTTCGGTCAGCTTGGTGGTGGTATCAGTGTGCTTGGTGCCTCTGTTGTACAGTGCCGGTGTTAGCGGTCAACAGAACTCGCCGATCGTAGTGATTGATGGGCTCGGTACGGTACAAGGAACACGGGGCCGTACCGCCTGGACGGATCGGGAAATTTTCAAATTCTACAACATCCGCTACGCGGAAGCTCCGATCGGCCAGCAACGGTTTCGCAATCCAATTCCCGTGAAACCGTGGAGCGGTGTGTACAATGCAGCGCTCCCGGGGAAACCATGCCCCCAGATTGGCATGAACATGAGCACCAGTGATTTAGCGGCCGAAGATTGTCTCACACTGTCGGTGTATACGCAAAATGTTACTGCCAACCGTCCCGTGATGGTGTTCATACACGGTGGCGCGTTCGTCGTCGGGTCCGCCTCACTCTACGAACCGGACTATCTGCTCGAAAAGGACATTGTGCTGGTGTCAATCCAGTATCGGCTTGGTCCGCTCGGCTTTCTTTCCACCGGTACCGCCAACATCCCGGGCAACATGGCCATGCTCGATATGATCACCGCACTGGAGTGGGTTTCGAACAATATTCGCTTCTTCGGCGGCGACCGTACCTCGGTGACGGTGTTCGGTGAGTCAGCGGGCGGACAGCCGTATCGGCCCTGCTGTACAGTCCAACGGTGCGGGAAGATCTATTCCACCGTGCCATCATACAGTCCGGGTCCATCTTTTCGCCCTGGGCGAC-TTGTAAATCACCAAAGGAAGGGGCGCTCGACATCGCAAGGCGCGTCAACTGTGATCGACCGGTGGAAACGATGGAAGACTGTTTGCGGAATGTGCCG] [+] EMBL BM637619 [CCGGCCTGTTGAAAGGTTCGCACACTGTCCTTCTTGGAGGTGTTTGTTGGTGCTGGTGGTGGTTGGAGGCTCACACAAAAAAGAAGAATAACAATCAAAATTTAACAGTGACAATGCATGTGCAGTGGATTTCATTCAGCTTGGTGGTGTTATCAGTGTGCTTGGTGCCTCTGTTGTACAGTGCCGGTGTTAGCGGTCAACAGAACTCGCCGATCGTAGTGATTGATGGGCTCGGTACGGTACAAGGAACACGGGGCCGTACCGCCTGGACGGATCGGGAAATTTTCAAATTCTACAACATCCGCTACGCGGAAGCTCCGATCGGCCAGCAACGGTTTCGCAATCCCATTCCCGTGAAACCGTGGAGCGGTGTGTACAATGCAGCGCTCCCGGGGAAACCATGCCCCCAGATTGGCATGAACATGAGCACCAGTGATTTAGCGGCCGAAGATTGTCTCACACTGTCGGTGTATACGCAAAATGTTACTGGCAACCGTCCCGTGATGGTGTTCATACACGGTGGCGCGTTCGTCGTCGGGTCCGCCTCACTCTACGAACCGGACTATCTGCTCGAAAAGGACATTGTGCTGGTGTCAATCCAGTATCGGCTCGGTCCGCTCGGCTTTCTCTCCACCGGTACCGCC ] [+] EMBL BM631074 [ ccgGGTTCGCACACTGTCCTTCTTGGAGGTGTTTGTTGTTGCTGGTGGTGGTTGGAGGCTCACACAAAAAAGAAGAAGAACAATCAAAATTTAACAGTGACAATGCATGTGCAATGGATTTCGGTCAGCTTGGTGGTGGTATCAGTGTGCTTGGTGCCTCTGTTGTACAGTGCCGGTGTTAGCGGTCAACAGAACTCGCCGATCGTAGTGATTGATGGGCTCGGTACGGTACAAGGAACACGGGGCCGTACCGCCTGGACGGATCGGGAAATTTTCAAATTCTACAACATCCGCTACGCGGAAGCTCCGATCGGCCAGCAACGGTTTCGCAATCCAATTCCCGTGAAACCGTGGAGCGGTGTGTACAATGCAGCGCTCCCGGGGAAACCATGCCCCCAGATTGGCATGAACATGAGCACCAGTGATTTAGCGGCCGAAGATTGTCTCACACTGTCGGTGTATACGCAAAATGTTACTGCCAACCGTCCCGTGATGGTGTTCATAC ] [+] EMBL CNS08U0A [ TCTTGGAGGTGTTTGTTGTTGCTGGTGGTAGTTGGAGGCTCACACAAAAAAGAAGAAGAACAATCAAAATTTAACAGTGACAATGCATGTGCAATGGATTTCGGTCAGCTTGGTGGTGGTATCAGTGTGCTTGGTGCCTCTGTTGTACAGTGCCGGTGTTAGCGGTCAACAGAACTCGCCGATCGTAGTGATTGATGGGCTCGGTACGGTACAAGGAACACGGGGCCGTACCGCCTGGACGGATCGGGAAATTTTCAAATTCTACAACATCCGCTACGC GAAGCTCCGATCGGCCAGCAACGGTTTCGCAATCCAATTCCCGTGAAACCGTGGAGC GTGTGTACAATGCAGCGCTCCCGGGGAAACCATGCCCCCAGATTGGCATGAACATGAGCACCAGTGATTTAGCGGCCGAAGATTGTCTCACACTGTCGGTGTATACGCAAAATGTTACTGCCAACCGTCCCGTGATGGTGTTCATACACGGTGGCGCGTTCGTCGTCGGGTCCGCCTCACTCTACGAACCGGACTATCTGCTCGAAAAGGACATTGTGCTGGTGTCAATCCAGTATCGGCTTGGTCCGCTCGGCTTTCTTTCCACCGGTACCGCCAACATCCCGGGCAACATGGCCATGCTCGATATGATCACCGCACTGGAGTGGGTTTCGAACAATATTCGCTTCTTCGGCGGCGACCGTACCTCGGTGACGGTGTTCGGTGAGTCAGCGGGCGGACAGCCGTATCGGCCCTGCTGTACAGTCCAACGGTGCGGGAAGATCTATTCCACCGTGCCATCATACAGTCCGGGTCCATCTTTTCGCCCTGGGCGAC TTGTAAATCACCAAAGGAAGGGGCGCTCGACATCGCAAGGCGCGTCAACTGTGATCGACCGGTGGAAACGATGGAAGACTGTTTGCGGAATGTGCCG] [+] EMBL CNS08S8P [ TCTTGGAGGTGTTTGTTGTTGCTGGTGGTAGTTGGAGGCTCACACAAAAAAGAAGAAGAACAATCAAAATTTAACAGTGACAATGCATGTGCAATGGATTTCGGTCAGCTTGGTGGTGGTATCAGTGTGCTTGGTGCCTCTGTTGTACAGTGCCGGTGTTAGCGGTCAACAGAACTCGCCGATCGTAGTGATTGATGGGCTCGGTACGGTACAAGGAACACGGGGCCGTACCGCCTGGACGGATCGGGAAATTTTCAAATTCTACAACATCCGCTACGC GAAGCTCCGATCGGCCAGCAACGGTTTCGCAATCCAATTCCCGTGAAACCGTGGAGCGGTGTGTACAATGCAGCGCTCCCGGGGAAACCATGCCCCCAGATTGGCATGAACATGAGCACCAGTGATTTTTTTGCCGAAGATTGTCTCACACTGTCGGTGTATACGCAAAAAGTTACTGCCAACCGTCCCGTGATGGTGTTCATACACGGTGGCGCGTTCGTCGTCGGGTCCGCCTCACTCTACGAACCGGACTATCTGCTCGAAAAGGACATTGTGCTGGTGTCAATCCAGTATCGGCTTGGTCCGCTCGGCTTTCTTTCCACCGGTACCGCCAACATCCCGGGCAACATGGCCATGCTCGATATGATCACCGCACTGGAGTGGGTTTCGAACAATATTCGCTTCTTCGGCGGCGACCGTACCTCGGTGACGGTGTTCGGTGAGTCAGCGGGCGGACAGCCGTATCGGCCCTGCTGTACAGTCCAACGGTGCGGGAAGATCTATTCCACCGTGCCATCATACAGTCCGGGTCCATCTTTTCGCCCTGGGCGACTTTGTAAATCACCAAAGGAAGGGGCGCTCGACATCGCAAGGCGCGTCAACTGTGATCGACCGGTGGAACCGATGGA ] consensusID : consensus_6544#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 166 fasta sequence [GCAAGATCCCCCGAGGTTNACATGCATGTGCATGGATTTCGGTCAGCTTGGTGGTGGTATCAGTGTGCTTGGTGCCTCTGTTGTACAGTGCCGGTGTTAGCGGTCAACAGAACTCGCCGATCGTAGTGATTGATGGGCTCGGTACGGTACAAGGAACACGGGGCCG] [+] EMBL AL695290 [GCAAGATCCCCCGAGGTTNACATGCATGTGCATGGATTTCGGTCAGCTTGGTGGTGGTATCAGTGTGCTTGGTGCCTCTGTTGTACAGTGCCGGTGTTAGCGGTCAACAGAACTCGCCGATCGTAGTGATTGATGGGCTCGGTACGGTACAAGGAACACGGGGCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6544#0 CCGGCCTGTTGAAAGGTTCGCACACTGTCCTTCTTGGAGGTGTTTGTTGTTGCTGGTGGT 60 consensus_6544#1 ------------------------------------------------------------ consensus_6544#0 GGTTGGAGGCTCACACAAAAAAGAAGAAGAACAATCAAAATTTAACAGTGACAATGCATG 120 consensus_6544#1 ------------------------GCAAGATCCCCCGAGGTTNAC--------ATGCATG 28 **** * * * ** * ******* consensus_6544#0 TGCAATGGATTTCGGTCAGCTTGGTGGTGGTATCAGTGTGCTTGGTGCCTCTGTTGTACA 180 consensus_6544#1 TGCA-TGGATTTCGGTCAGCTTGGTGGTGGTATCAGTGTGCTTGGTGCCTCTGTTGTACA 87 **** ******************************************************* consensus_6544#0 GTGCCGGTGTTAGCGGTCAACAGAACTCGCCGATCGTAGTGATTGATGGGCTCGGTACGG 240 consensus_6544#1 GTGCCGGTGTTAGCGGTCAACAGAACTCGCCGATCGTAGTGATTGATGGGCTCGGTACGG 147 ************************************************************ consensus_6544#0 TACAAGGAACACGGGGCCGTACCGCCTGGACGGATCGGGAAATTTTCAAATTCTACAACA 300 consensus_6544#1 TACAAGGAACACGGGGCCG----------------------------------------- 166 ******************* consensus_6544#0 TCCGCTACGCGGAAGCTCCGATCGGCCAGCAACGGTTTCGCAATCCAATTCCCGTGAAAC 360 consensus_6544#1 ------------------------------------------------------------ consensus_6544#0 CGTGGAGCGGTGTGTACAATGCAGCGCTCCCGGGGAAACCATGCCCCCAGATTGGCATGA 420 consensus_6544#1 ------------------------------------------------------------ consensus_6544#0 ACATGAGCACCAGTGATTTAGCGGCCGAAGATTGTCTCACACTGTCGGTGTATACGCAAA 480 consensus_6544#1 ------------------------------------------------------------ consensus_6544#0 ATGTTACTGCCAACCGTCCCGTGATGGTGTTCATACACGGTGGCGCGTTCGTCGTCGGGT 540 consensus_6544#1 ------------------------------------------------------------ consensus_6544#0 CCGCCTCACTCTACGAACCGGACTATCTGCTCGAAAAGGACATTGTGCTGGTGTCAATCC 600 consensus_6544#1 ------------------------------------------------------------ consensus_6544#0 AGTATCGGCTTGGTCCGCTCGGCTTTCTTTCCACCGGTACCGCCAACATCCCGGGCAACA 660 consensus_6544#1 ------------------------------------------------------------ consensus_6544#0 TGGCCATGCTCGATATGATCACCGCACTGGAGTGGGTTTCGAACAATATTCGCTTCTTCG 720 consensus_6544#1 ------------------------------------------------------------ consensus_6544#0 GCGGCGACCGTACCTCGGTGACGGTGTTCGGTGAGTCAGCGGGCGGACAGCCGTATCGGC 780 consensus_6544#1 ------------------------------------------------------------ consensus_6544#0 CCTGCTGTACAGTCCAACGGTGCGGGAAGATCTATTCCACCGTGCCATCATACAGTCCGG 840 consensus_6544#1 ------------------------------------------------------------ consensus_6544#0 GTCCATCTTTTCGCCCTGGGCGACTTGTAAATCACCAAAGGAAGGGGCGCTCGACATCGC 900 consensus_6544#1 ------------------------------------------------------------ consensus_6544#0 AAGGCGCGTCAACTGTGATCGACCGGTGGAAACGATGGAAGACTGTTTGCGGAATGTGCC 960 consensus_6544#1 ------------------------------------------------------------ consensus_6544#0 G 961 consensus_6544#1 - |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||