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Anopheles gambiae
cluster # 6544 cluster # 6544       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6544#0 length = 961 sequences # 4  
consensus_6544#1 length = 166 sequences # 1  

consensusID : consensus_6544#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 961
fasta sequence
                              [CCGGCCTGTTGAAAGGTTCGCACACTGTCCTTCTTGGAGGTGTTTGTTGTTGCTGGTGGTGGTTGGAGGCTCACACAAAAAAGAAGAAGAACAATCAAAATTTAACAGTGACAATGCATGTGCAATGGATTTCGGTCAGCTTGGTGGTGGTATCAGTGTGCTTGGTGCCTCTGTTGTACAGTGCCGGTGTTAGCGGTCAACAGAACTCGCCGATCGTAGTGATTGATGGGCTCGGTACGGTACAAGGAACACGGGGCCGTACCGCCTGGACGGATCGGGAAATTTTCAAATTCTACAACATCCGCTACGCGGAAGCTCCGATCGGCCAGCAACGGTTTCGCAATCCAATTCCCGTGAAACCGTGGAGCGGTGTGTACAATGCAGCGCTCCCGGGGAAACCATGCCCCCAGATTGGCATGAACATGAGCACCAGTGATTTAGCGGCCGAAGATTGTCTCACACTGTCGGTGTATACGCAAAATGTTACTGCCAACCGTCCCGTGATGGTGTTCATACACGGTGGCGCGTTCGTCGTCGGGTCCGCCTCACTCTACGAACCGGACTATCTGCTCGAAAAGGACATTGTGCTGGTGTCAATCCAGTATCGGCTTGGTCCGCTCGGCTTTCTTTCCACCGGTACCGCCAACATCCCGGGCAACATGGCCATGCTCGATATGATCACCGCACTGGAGTGGGTTTCGAACAATATTCGCTTCTTCGGCGGCGACCGTACCTCGGTGACGGTGTTCGGTGAGTCAGCGGGCGGACAGCCGTATCGGCCCTGCTGTACAGTCCAACGGTGCGGGAAGATCTATTCCACCGTGCCATCATACAGTCCGGGTCCATCTTTTCGCCCTGGGCGAC-TTGTAAATCACCAAAGGAAGGGGCGCTCGACATCGCAAGGCGCGTCAACTGTGATCGACCGGTGGAAACGATGGAAGACTGTTTGCGGAATGTGCCG]

[+] EMBL BM637619             [CCGGCCTGTTGAAAGGTTCGCACACTGTCCTTCTTGGAGGTGTTTGTTGGTGCTGGTGGTGGTTGGAGGCTCACACAAAAAAGAAGAATAACAATCAAAATTTAACAGTGACAATGCATGTGCAGTGGATTTCATTCAGCTTGGTGGTGTTATCAGTGTGCTTGGTGCCTCTGTTGTACAGTGCCGGTGTTAGCGGTCAACAGAACTCGCCGATCGTAGTGATTGATGGGCTCGGTACGGTACAAGGAACACGGGGCCGTACCGCCTGGACGGATCGGGAAATTTTCAAATTCTACAACATCCGCTACGCGGAAGCTCCGATCGGCCAGCAACGGTTTCGCAATCCCATTCCCGTGAAACCGTGGAGCGGTGTGTACAATGCAGCGCTCCCGGGGAAACCATGCCCCCAGATTGGCATGAACATGAGCACCAGTGATTTAGCGGCCGAAGATTGTCTCACACTGTCGGTGTATACGCAAAATGTTACTGGCAACCGTCCCGTGATGGTGTTCATACACGGTGGCGCGTTCGTCGTCGGGTCCGCCTCACTCTACGAACCGGACTATCTGCTCGAAAAGGACATTGTGCTGGTGTCAATCCAGTATCGGCTCGGTCCGCTCGGCTTTCTCTCCACCGGTACCGCC                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BM631074             [           ccgGGTTCGCACACTGTCCTTCTTGGAGGTGTTTGTTGTTGCTGGTGGTGGTTGGAGGCTCACACAAAAAAGAAGAAGAACAATCAAAATTTAACAGTGACAATGCATGTGCAATGGATTTCGGTCAGCTTGGTGGTGGTATCAGTGTGCTTGGTGCCTCTGTTGTACAGTGCCGGTGTTAGCGGTCAACAGAACTCGCCGATCGTAGTGATTGATGGGCTCGGTACGGTACAAGGAACACGGGGCCGTACCGCCTGGACGGATCGGGAAATTTTCAAATTCTACAACATCCGCTACGCGGAAGCTCCGATCGGCCAGCAACGGTTTCGCAATCCAATTCCCGTGAAACCGTGGAGCGGTGTGTACAATGCAGCGCTCCCGGGGAAACCATGCCCCCAGATTGGCATGAACATGAGCACCAGTGATTTAGCGGCCGAAGATTGTCTCACACTGTCGGTGTATACGCAAAATGTTACTGCCAACCGTCCCGTGATGGTGTTCATAC                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CNS08U0A             [                               TCTTGGAGGTGTTTGTTGTTGCTGGTGGTAGTTGGAGGCTCACACAAAAAAGAAGAAGAACAATCAAAATTTAACAGTGACAATGCATGTGCAATGGATTTCGGTCAGCTTGGTGGTGGTATCAGTGTGCTTGGTGCCTCTGTTGTACAGTGCCGGTGTTAGCGGTCAACAGAACTCGCCGATCGTAGTGATTGATGGGCTCGGTACGGTACAAGGAACACGGGGCCGTACCGCCTGGACGGATCGGGAAATTTTCAAATTCTACAACATCCGCTACGC GAAGCTCCGATCGGCCAGCAACGGTTTCGCAATCCAATTCCCGTGAAACCGTGGAGC GTGTGTACAATGCAGCGCTCCCGGGGAAACCATGCCCCCAGATTGGCATGAACATGAGCACCAGTGATTTAGCGGCCGAAGATTGTCTCACACTGTCGGTGTATACGCAAAATGTTACTGCCAACCGTCCCGTGATGGTGTTCATACACGGTGGCGCGTTCGTCGTCGGGTCCGCCTCACTCTACGAACCGGACTATCTGCTCGAAAAGGACATTGTGCTGGTGTCAATCCAGTATCGGCTTGGTCCGCTCGGCTTTCTTTCCACCGGTACCGCCAACATCCCGGGCAACATGGCCATGCTCGATATGATCACCGCACTGGAGTGGGTTTCGAACAATATTCGCTTCTTCGGCGGCGACCGTACCTCGGTGACGGTGTTCGGTGAGTCAGCGGGCGGACAGCCGTATCGGCCCTGCTGTACAGTCCAACGGTGCGGGAAGATCTATTCCACCGTGCCATCATACAGTCCGGGTCCATCTTTTCGCCCTGGGCGAC TTGTAAATCACCAAAGGAAGGGGCGCTCGACATCGCAAGGCGCGTCAACTGTGATCGACCGGTGGAAACGATGGAAGACTGTTTGCGGAATGTGCCG]
[+] EMBL CNS08S8P             [                               TCTTGGAGGTGTTTGTTGTTGCTGGTGGTAGTTGGAGGCTCACACAAAAAAGAAGAAGAACAATCAAAATTTAACAGTGACAATGCATGTGCAATGGATTTCGGTCAGCTTGGTGGTGGTATCAGTGTGCTTGGTGCCTCTGTTGTACAGTGCCGGTGTTAGCGGTCAACAGAACTCGCCGATCGTAGTGATTGATGGGCTCGGTACGGTACAAGGAACACGGGGCCGTACCGCCTGGACGGATCGGGAAATTTTCAAATTCTACAACATCCGCTACGC GAAGCTCCGATCGGCCAGCAACGGTTTCGCAATCCAATTCCCGTGAAACCGTGGAGCGGTGTGTACAATGCAGCGCTCCCGGGGAAACCATGCCCCCAGATTGGCATGAACATGAGCACCAGTGATTTTTTTGCCGAAGATTGTCTCACACTGTCGGTGTATACGCAAAAAGTTACTGCCAACCGTCCCGTGATGGTGTTCATACACGGTGGCGCGTTCGTCGTCGGGTCCGCCTCACTCTACGAACCGGACTATCTGCTCGAAAAGGACATTGTGCTGGTGTCAATCCAGTATCGGCTTGGTCCGCTCGGCTTTCTTTCCACCGGTACCGCCAACATCCCGGGCAACATGGCCATGCTCGATATGATCACCGCACTGGAGTGGGTTTCGAACAATATTCGCTTCTTCGGCGGCGACCGTACCTCGGTGACGGTGTTCGGTGAGTCAGCGGGCGGACAGCCGTATCGGCCCTGCTGTACAGTCCAACGGTGCGGGAAGATCTATTCCACCGTGCCATCATACAGTCCGGGTCCATCTTTTCGCCCTGGGCGACTTTGTAAATCACCAAAGGAAGGGGCGCTCGACATCGCAAGGCGCGTCAACTGTGATCGACCGGTGGAACCGATGGA                      ]


>consensus_6544#0 CCGGCCTGTTGAAAGGTTCGCACACTGTCCTTCTTGGAGGTGTTTGTTGTTGCTGGTGGT GGTTGGAGGCTCACACAAAAAAGAAGAAGAACAATCAAAATTTAACAGTGACAATGCATG TGCAATGGATTTCGGTCAGCTTGGTGGTGGTATCAGTGTGCTTGGTGCCTCTGTTGTACA GTGCCGGTGTTAGCGGTCAACAGAACTCGCCGATCGTAGTGATTGATGGGCTCGGTACGG TACAAGGAACACGGGGCCGTACCGCCTGGACGGATCGGGAAATTTTCAAATTCTACAACA TCCGCTACGCGGAAGCTCCGATCGGCCAGCAACGGTTTCGCAATCCAATTCCCGTGAAAC CGTGGAGCGGTGTGTACAATGCAGCGCTCCCGGGGAAACCATGCCCCCAGATTGGCATGA ACATGAGCACCAGTGATTTAGCGGCCGAAGATTGTCTCACACTGTCGGTGTATACGCAAA ATGTTACTGCCAACCGTCCCGTGATGGTGTTCATACACGGTGGCGCGTTCGTCGTCGGGT CCGCCTCACTCTACGAACCGGACTATCTGCTCGAAAAGGACATTGTGCTGGTGTCAATCC AGTATCGGCTTGGTCCGCTCGGCTTTCTTTCCACCGGTACCGCCAACATCCCGGGCAACA TGGCCATGCTCGATATGATCACCGCACTGGAGTGGGTTTCGAACAATATTCGCTTCTTCG GCGGCGACCGTACCTCGGTGACGGTGTTCGGTGAGTCAGCGGGCGGACAGCCGTATCGGC CCTGCTGTACAGTCCAACGGTGCGGGAAGATCTATTCCACCGTGCCATCATACAGTCCGG GTCCATCTTTTCGCCCTGGGCGACTTGTAAATCACCAAAGGAAGGGGCGCTCGACATCGC AAGGCGCGTCAACTGTGATCGACCGGTGGAAACGATGGAAGACTGTTTGCGGAATGTGCC G



consensusID : consensus_6544#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 166
fasta sequence
                              [GCAAGATCCCCCGAGGTTNACATGCATGTGCATGGATTTCGGTCAGCTTGGTGGTGGTATCAGTGTGCTTGGTGCCTCTGTTGTACAGTGCCGGTGTTAGCGGTCAACAGAACTCGCCGATCGTAGTGATTGATGGGCTCGGTACGGTACAAGGAACACGGGGCCG]

[+] EMBL AL695290             [GCAAGATCCCCCGAGGTTNACATGCATGTGCATGGATTTCGGTCAGCTTGGTGGTGGTATCAGTGTGCTTGGTGCCTCTGTTGTACAGTGCCGGTGTTAGCGGTCAACAGAACTCGCCGATCGTAGTGATTGATGGGCTCGGTACGGTACAAGGAACACGGGGCCG]


>consensus_6544#1 GCAAGATCCCCCGAGGTTNACATGCATGTGCATGGATTTCGGTCAGCTTGGTGGTGGTAT CAGTGTGCTTGGTGCCTCTGTTGTACAGTGCCGGTGTTAGCGGTCAACAGAACTCGCCGA TCGTAGTGATTGATGGGCTCGGTACGGTACAAGGAACACGGGGCCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6544#0      CCGGCCTGTTGAAAGGTTCGCACACTGTCCTTCTTGGAGGTGTTTGTTGTTGCTGGTGGT 60
consensus_6544#1      ------------------------------------------------------------
                                                                                  

consensus_6544#0      GGTTGGAGGCTCACACAAAAAAGAAGAAGAACAATCAAAATTTAACAGTGACAATGCATG 120
consensus_6544#1      ------------------------GCAAGATCCCCCGAGGTTNAC--------ATGCATG 28
                                                **** *   * *  ** *         *******

consensus_6544#0      TGCAATGGATTTCGGTCAGCTTGGTGGTGGTATCAGTGTGCTTGGTGCCTCTGTTGTACA 180
consensus_6544#1      TGCA-TGGATTTCGGTCAGCTTGGTGGTGGTATCAGTGTGCTTGGTGCCTCTGTTGTACA 87
                      **** *******************************************************

consensus_6544#0      GTGCCGGTGTTAGCGGTCAACAGAACTCGCCGATCGTAGTGATTGATGGGCTCGGTACGG 240
consensus_6544#1      GTGCCGGTGTTAGCGGTCAACAGAACTCGCCGATCGTAGTGATTGATGGGCTCGGTACGG 147
                      ************************************************************

consensus_6544#0      TACAAGGAACACGGGGCCGTACCGCCTGGACGGATCGGGAAATTTTCAAATTCTACAACA 300
consensus_6544#1      TACAAGGAACACGGGGCCG----------------------------------------- 166
                      *******************                                         

consensus_6544#0      TCCGCTACGCGGAAGCTCCGATCGGCCAGCAACGGTTTCGCAATCCAATTCCCGTGAAAC 360
consensus_6544#1      ------------------------------------------------------------
                                                                                  

consensus_6544#0      CGTGGAGCGGTGTGTACAATGCAGCGCTCCCGGGGAAACCATGCCCCCAGATTGGCATGA 420
consensus_6544#1      ------------------------------------------------------------
                                                                                  

consensus_6544#0      ACATGAGCACCAGTGATTTAGCGGCCGAAGATTGTCTCACACTGTCGGTGTATACGCAAA 480
consensus_6544#1      ------------------------------------------------------------
                                                                                  

consensus_6544#0      ATGTTACTGCCAACCGTCCCGTGATGGTGTTCATACACGGTGGCGCGTTCGTCGTCGGGT 540
consensus_6544#1      ------------------------------------------------------------
                                                                                  

consensus_6544#0      CCGCCTCACTCTACGAACCGGACTATCTGCTCGAAAAGGACATTGTGCTGGTGTCAATCC 600
consensus_6544#1      ------------------------------------------------------------
                                                                                  

consensus_6544#0      AGTATCGGCTTGGTCCGCTCGGCTTTCTTTCCACCGGTACCGCCAACATCCCGGGCAACA 660
consensus_6544#1      ------------------------------------------------------------
                                                                                  

consensus_6544#0      TGGCCATGCTCGATATGATCACCGCACTGGAGTGGGTTTCGAACAATATTCGCTTCTTCG 720
consensus_6544#1      ------------------------------------------------------------
                                                                                  

consensus_6544#0      GCGGCGACCGTACCTCGGTGACGGTGTTCGGTGAGTCAGCGGGCGGACAGCCGTATCGGC 780
consensus_6544#1      ------------------------------------------------------------
                                                                                  

consensus_6544#0      CCTGCTGTACAGTCCAACGGTGCGGGAAGATCTATTCCACCGTGCCATCATACAGTCCGG 840
consensus_6544#1      ------------------------------------------------------------
                                                                                  

consensus_6544#0      GTCCATCTTTTCGCCCTGGGCGACTTGTAAATCACCAAAGGAAGGGGCGCTCGACATCGC 900
consensus_6544#1      ------------------------------------------------------------
                                                                                  

consensus_6544#0      AAGGCGCGTCAACTGTGATCGACCGGTGGAAACGATGGAAGACTGTTTGCGGAATGTGCC 960
consensus_6544#1      ------------------------------------------------------------
                                                                                  

consensus_6544#0      G 961
consensus_6544#1      -
                       




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)