These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6547#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 708 fasta sequence [CCGGTTCGGCAGTGGTGCCCTAGAGATGTGGTTTTACTACGGAGTGATCGATTTTCTTACGTGTTGCTGCGCGTAAACCTCCCCACCAACCAGCGAGATCTCTGCTAAAGAACCGACTGTAAAGTTTGCGATACTTACTATTAACTCATAGTGAAATTTTGAGTGCGTGTGTGATCAAACAACGAAAACGGGGTGATACATATTGGAGTTGTGATTATAATTCAATTAGCGTTTGCGGAAAGTGGAGTAGTGGTTATTTAAAAATTGCGTTACTTTAGGCATTCGGTATCAACGATCCCGCCCGCGTGTGTGTGTGTGTTTTTAGCTTCAAACCCGGAGGGTTAGAAAATGATATTGAATGTCAATAAGAAAAAGCTTCTGCTGCTATCCGTCCTAGCAGCGATAGTGATCGTCGCCCTTGCCGTCGGCCTCACCGTCGGGCTTCGCTCGCGTGACAGCTCAGACAATCAGCATGCCCGGCTTACCGGAGCCGCCGTCACCTCCAACGGCATCGAGTGTGCCGGCATCGGTGCAGACATCCTGCGGCGCAACGGTTCGGCAGTGGATGCCGCCATCGCAACACTATTCTGCGAAGGTGTAACCTGCCCCCAGAGCATGGGTCTCGGCGGTGGCTTCCTGGCCACGATCTACATCCGCGACACCAACACGGCCGTGGCGTTGGACGCACGCGAAGTGGCACCGGCCGCC] [+] EMBL BM584235 [CCGGTTCGGCAGTGGTGCCCTAGAGATGTGGTTTTACTACGGAGTGATCGATTTTCTTACGTGTTGCTGCGCGTAAACCTCCCCACCAACCAGCGAGATCTCTGCTAAAGAACCGACTGTAAAGTTTGCGATACTTACTATTAACTCATAGTGAAATTTTGAGTGCGTGTGTGATCAAACAACGAAAACGGGGTGATACATATTGGAGTTGTGATTATAATTCAATTAGCGTTTGCGGAAAGTGGAGTAGTGGTTATTTAAAAATTGCGTTACTTTAGGCATTCGGTATCAACGATCCCGCCCGCGTGTGTGTGTGTGTTTTTAGCTTCAAACCCGGAGGGTTAGAAAATGATATTGAATGTCAATAAGAAAAAGCTTCTGCTGCTATCCGTCCTAGCAGCGATAGTGATCGTCGCCCTTGCCGTCGGCCTCACCGTCGGGCTTCGCTCGCGTGACAGCTCAGACAATCAGCATGCCCGGCTTACCGGAGCCGCCGTCACCTCCAACGGCATCGAGTGTGCCGGCATCGGTGCAGACATCCTGCGGCGCAACGGTTCGGCAGTGGATGCCGCCATCGCAACACTATTCTGCGAAGGTGTAACCTGCCCCCAGAGCATGGGTCTCGGCGGTGGCTTCCTGGCCACGATCTACATCCGCGACACCAACACGGCCGTGGCGTTGGACGCACGCGAAGTGGCACCGGCCGCC] [+] EMBL BM581932 [ ccgGTGGTTTTACTACGGAGT ATCGATTTTCTTACGTGTTGCTGCGCGTAAACCTCCCCACCAACCAGCGAGATCTCTGCTAAAGAACCGACTGTAAAGTTTGCGATACTTACTATTAACTCATAGTGAAATTTTGAGTGCGTGTGTGATCAAACAACGAAAACGGGGTGATACATATTGGAGTTGTGATTATAATTCAATTAGCGTTTGCGGAAAGTGGAGTAGTGGTTATTTAAAAATTGCGTTACTTTAGGCATTCGGTATCAACGATCCCGCCCGCGTGTGTGTGTGTGTTTTTAGCTTCAAACCCGGAGGGTTAGAAAATGATATTGAATGTCAATAAGAAAAAGCTTCTGCTGCTATCCGTCCTAGCAGCGATAGTGATCGTCGCCCTTGCCGTCGGCCTCACCGTCGGGCTTCGCTCGCGTGACAGCTCAGACAATCAGCATGCCCGGCTTACCGGAGCCGCCGTCACCTCCAACGGCATCGAGTGTGCCGGCATCGGTGCAGACATCCTGCGGCGCAACGGTTCGGCAGTGGATGCCGCCATCGCAACACTATTCTGCGAAGGTGTAACCTGCCCCCAGAGCATGGGTCTCGGCGGTGGCTTCCTGGCCACGATCTACATCCGCGACACCAACACGGCCGTGGCGTTGGACGC ] consensusID : consensus_6547#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 701 fasta sequence [CCGGTGCCCTAGAGATGTGGTTTTACTACGGAGTGATCGATTTTCTTACGTGTTGCTGCGCGTAAACCTCCCCACCCCTCCAGCGAGATCTCTGCTAAAGAACCGACTGTAAAGTTTGCGATACTTACTATTAACTCATAGTGAAATTTTGAGTGCGTGTGTGATCAAACAACGAAAACGGGGTGATACATATTGGAGTTGTGATTATAATTCAATTAGCGTTTGCGGAAAGTGGTGTAGTGGTTATTTAAAAATTGCGTTCCTTTAGGCACTCGGTATCAACGATCCCGCCCGTGTGTGTGTGTGTGTGCTATTTTTTACTTCAAACCCGGAGGGTTAGAAAATGATAAATTAAGCAGTGCGTTTCGATAGAACACTCAGCGACCCGCCCCCAGCATCATGAAGCGCAGAACCATTCTCTCGCTGCTGATCGCAGCGATCATACTCACAATCCTGATCGTCGTGTTTGTGCTAGCCACCCAGGGCAACATAACACTCCCCCCTCCACCGGGTGAACCTATCGCCCATCATCACCGTACCGGTGCGGTCGTCGCAAACGGTGCCGAGTGTGCCGCGATCGGGGCCCAAATCCTGCGCCAGAATGGTACCGCCGCCGACGCTGCCATCGCAACGCTGTTCTGCGAAGGCGTGACCTGCCCGCAAAGTATGGGCCTGGGCGGTGGCTTTCTGCTGACCATCTA] [+] EMBL BM640660 [CCGGTGCCCTAGAGATGTGGTTTTACTACGGAGTGATCGATTTTCTTACGTGTTGCTGCGCGTAAACCTCCCCACCCCTCCAGCGAGATCTCTGCTAAAGAACCGACTGTAAAGTTTGCGATACTTACTATTAACTCATAGTGAAATTTTGAGTGCGTGTGTGATCAAACAACGAAAACGGGGTGATACATATTGGAGTTGTGATTATAATTCAATTAGCGTTTGCGGAAAGTGGTGTAGTGGTTATTTAAAAATTGCGTTCCTTTAGGCACTCGGTATCAACGATCCCGCCCGTGTGTGTGTGTGTGTGCTATTTTTTACTTCAAACCCGGAGGGTTAGAAAATGATAAATTAAGCAGTGCGTTTCGATAGAACACTCAGCGACCCGCCCCCAGCATCATGAAGCGCAGAACCATTCTCTCGCTGCTGATCGCAGCGATCATACTCACAATCCTGATCGTCGTGTTTGTGCTAGCCACCCAGGGCAACATAACACTCCCCCCTCCACCGGGTGAACCTATCGCCCATCATCACCGTACCGGTGCGGTCGTCGCAAACGGTGCCGAGTGTGCCGCGATCGGGGCCCAAATCCTGCGCCAGAATGGTACCGCCGCCGACGCTGCCATCGCAACGCTGTTCTGCGAAGGCGTGACCTGCCCGCAAAGTATGGGCCTGGGCGGTGGCTTTCTGCTGACCATCTA] consensusID : consensus_6547#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence [CCGCCCACGCGTCCGCGGTTGCGACGGAAAGGTAAACAAGGCAAAGGTGAAAAGCCGACGCCTATAAAAACAGAGAGTTTTGTGAGTTCTTTTGTGATCTAGCGCAAAAACAAGCTTTTGCAAGTTATAAGTAAATTAAAGATTTTCATAGTAAATGTGAGTATGGTAGTTTGGTGAATACCGGTCGTGCAACGTGGAAACATTTTACCTGATTGAATGTCAATAAGAAAAAGCTTCTGCTGCTATCCGTCCTAGCAGCGATAGTGATCGTCGCCCTTGCCGTCGGCCTCACCGTCGGGCTTCGCTCGCGTGACAGCTCAGACAATCAGCATGCCCGGCTTACCGGAGCCGCCGTCACCTCCAACGGCATCGAGTGTGCCGGCATCGGTGCAGACATCCTGCGGCGCAACGGTTCGGCAGTGGATGCCGCCATCGCAACACTATTCTGCGAAGGTGTAACCTGCCCCCAGAGCATGGGTCCTCGGCGGTGGCTTCCTGGCCACGATCTACATCCGCGACACCAACACGGCCGTGGCGTTGGACGCACGCGAAGTGGCACCGGCCGCCGCCACCAAGGACATGTACG] [+] EMBL BM607883 [CCGCCCACGCGTCCGCGGTTGCGACGGAAAGGTAAACAAGGCAAAGGTGAAAAGCCGACGCCTATAAAAACAGAGAGTTTTGTGAGTTCTTTTGTGATCTAGCGCAAAAACAAGCTTTTGCAAGTTATAAGTAAATTAAAGATTTTCATAGTAAATGTGAGTATGGTAGTTTGGTGAATACCGGTCGTGCAACGTGGAAACATTTTACCTGATTGAATGTCAATAAGAAAAAGCTTCTGCTGCTATCCGTCCTAGCAGCGATAGTGATCGTCGCCCTTGCCGTCGGCCTCACCGTCGGGCTTCGCTCGCGTGACAGCTCAGACAATCAGCATGCCCGGCTTACCGGAGCCGCCGTCACCTCCAACGGCATCGAGTGTGCCGGCATCGGTGCAGACATCCTGCGGCGCAACGGTTCGGCAGTGGATGCCGCCATCGCAACACTATTCTGCGAAGGTGTAACCTGCCCCCAGAGCATGGGTCCTCGGCGGTGGCTTCCTGGCCACGATCTACATCCGCGACACCAACACGGCCGTGGCGTTGGACGCACGCGAAGTGGCACCGGCCGCCGCCACCAAGGACATGTACG] consensusID : consensus_6547#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 517 fasta sequence [CGACCCACGCGTCCGGAGATGTGGTTTTACTACGGAGTGATCGATTTTCTTACGTGTTGCTGCGCGTAAACCTCCCCACCAACCAGCGAGATCTCTGCTAAAGAACCGACTGTAAAGTTTGCGATACTTACTATTAACTCATAGTGAAATTTTGAGTGCGTGTGTGATCAAACAACGAAAACGGGGTGATACATATTGGAGTTGTGATTATAATTCAATTAGCGTTTGCGGAAAGTGGAGTAGTGGTTATTTAAAAATTGCGTTACTTTAGGCATTCGGTATCAACGATCCCGCCCGCGTGTGTGTGAGTGCTTTTTTTAACTTCAAACCCGGAGGGTTAGAAAATGATATTGAATGTCAATAAGAAAAAGCTTCTGCTGCTATCCGTCCTAGCAGCGATAGTGATCGTCGCCCTTGCCGTCGGCCTCACCGTCGGGCTTCGCTCGCGTGACAGTTCAGACAATCAGCATGCCCGTCTTACCGGAGCCGCCGTCACCTCCAACGGCATCGAGTGTGC] [+] EMBL BM581202 [CGACCCACGCGTCCGGAGATGTGGTTTTACTACGGAGTGATCGATTTTCTTACGTGTTGCTGCGCGTAAACCTCCCCACCAACCAGCGAGATCTCTGCTAAAGAACCGACTGTAAAGTTTGCGATACTTACTATTAACTCATAGTGAAATTTTGAGTGCGTGTGTGATCAAACAACGAAAACGGGGTGATACATATTGGAGTTGTGATTATAATTCAATTAGCGTTTGCGGAAAGTGGAGTAGTGGTTATTTAAAAATTGCGTTACTTTAGGCATTCGGTATCAACGATCCCGCCCGCGTGTGTGTGAGTGCTTTTTTTAACTTCAAACCCGGAGGGTTAGAAAATGATATTGAATGTCAATAAGAAAAAGCTTCTGCTGCTATCCGTCCTAGCAGCGATAGTGATCGTCGCCCTTGCCGTCGGCCTCACCGTCGGGCTTCGCTCGCGTGACAGTTCAGACAATCAGCATGCCCGTCTTACCGGAGCCGCCGTCACCTCCAACGGCATCGAGTGTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6547#1 -----------CCGGTGC-CCTAGAGATGTGGTTTTACTACGGAGTGATCGATTTTCTTA 48 consensus_6547#3 --------CGACCCACGCGTCCGGAGATGTGGTTTTACTACGGAGTGATCGATTTTCTTA 52 consensus_6547#0 CCGGTTCGGCAGTGGTGC-CCTAGAGATGTGGTTTTACTACGGAGTGATCGATTTTCTTA 59 consensus_6547#2 ------------------------------------------------------------ consensus_6547#1 CGTGTTGCTGCGCGTAAACCTCCCCACCCCTCCAGCGAGATCTCTGCTAAAGAACCGACT 108 consensus_6547#3 CGTGTTGCTGCGCGTAAACCTCCCCACCAA-CCAGCGAGATCTCTGCTAAAGAACCGACT 111 consensus_6547#0 CGTGTTGCTGCGCGTAAACCTCCCCACCAA-CCAGCGAGATCTCTGCTAAAGAACCGACT 118 consensus_6547#2 ------------------------------------------------------------ consensus_6547#1 GTAAAGTTTGCGATACTTACTATTAACTCATAGTGAAATTTTGAGTGCGTGTGTGATCAA 168 consensus_6547#3 GTAAAGTTTGCGATACTTACTATTAACTCATAGTGAAATTTTGAGTGCGTGTGTGATCAA 171 consensus_6547#0 GTAAAGTTTGCGATACTTACTATTAACTCATAGTGAAATTTTGAGTGCGTGTGTGATCAA 178 consensus_6547#2 ----------------------------------CCGCCCACGCGTCCGCGGTTGCGACG 26 * ** ** * ** consensus_6547#1 ACAACGAAAACGGGGTGATACATATTGGAGTTGTGATTATAATTCAATTAGCGTTTGCGG 228 consensus_6547#3 ACAACGAAAACGGGGTGATACATATTGGAGTTGTGATTATAATTCAATTAGCGTTTGCGG 231 consensus_6547#0 ACAACGAAAACGGGGTGATACATATTGGAGTTGTGATTATAATTCAATTAGCGTTTGCGG 238 consensus_6547#2 GAAAGGTAAACAAGGCAA-AGGTGAAAAGCCGACGCCTATAA---AAACAGAGAGTTTTG 82 ** * **** ** * * * * ***** ** ** * * * consensus_6547#1 AAAGTGGTGTAGTGGT-TATTTAAAAATTGCGTTCCTTTAGGCACTCGGTA--TCAACGA 285 consensus_6547#3 AAAGTGGAGTAGTGGT-TATTTAAAAATTGCGTTACTTTAGGCATTCGGTA--TCAACGA 288 consensus_6547#0 AAAGTGGAGTAGTGGT-TATTTAAAAATTGCGTTACTTTAGGCATTCGGTA--TCAACGA 295 consensus_6547#2 TGAGTTCTTTTGTGATCTAGCGCAAAAACAAGCTTTTGCAAGTTATAAGTAAATTAAAGA 142 *** * *** * ** **** * * * * * * *** * ** ** consensus_6547#1 TCCCGCCCGTGTGTGTGTGTGTGTGCTATTTTTTACTTCAAACC-CGGAGGGTTAGAAAA 344 consensus_6547#3 TCCCGCCCGCGTGTGTGTGAGTG--CTTTTTTTAACTTCAAACC-CGGAGGGTTAGAAAA 345 consensus_6547#0 TCCCGCCCGCGTGTGTGTGTGTG-----TTTTTAGCTTCAAACC-CGGAGGGTTAGAAAA 349 consensus_6547#2 TTTTCATAGTAAATGTGAGTATGGTAGTTTGGTGAATACCGGTCGTGCAACGTGGAAACA 202 * * **** * ** ** * * * * * * ** ** * consensus_6547#1 TGATAA---ATTAAGCAGTGCGTTTCGATAGAACACTCAGCGACCCGCCCCCAGCATCAT 401 consensus_6547#3 TGATA-----TTGAATGTCAATAAGAAAAAGCTTCTGCTGCTATCCGTCCTAGCAGCGAT 400 consensus_6547#0 TGATA-----TTGAATGTCAATAAGAAAAAGCTTCTGCTGCTATCCGTCCTAGCAGCGAT 404 consensus_6547#2 TTTTACCTGATTGAATGTCAATAAGAAAAAGCTTCTGCTGCTATCCGTCCTAGCAGCGAT 262 * ** ** * * ** * ** * *** ** ** consensus_6547#1 GAAGCGCAGAACCATTCTCTCGCTGCTGATCG-CAGCGATCATACTC---ACAATCCTGA 457 consensus_6547#3 AGTGATCGTCGCCCTTGCCGTCGGCCTCACCGTCGGGCTTCGCTCGCGTGACAGTTCAGA 460 consensus_6547#0 AGTGATCGTCGCCCTTGCCGTCGGCCTCACCGTCGGGCTTCGCTCGCGTGACAGCTCAGA 464 consensus_6547#2 AGTGATCGTCGCCCTTGCCGTCGGCCTCACCGTCGGGCTTCGCTCGCGTGACAGCTCAGA 322 * * ** ** * ** * ** * * ** * * *** * ** consensus_6547#1 TCGTCGTGTTTGTGCTAGCCACCCAGGGCAACATAACACTCCCCCCTCCACCGGGTGAAC 517 consensus_6547#3 CAATCA-GCATGCCCGTCTTACCGGAGCCGCCGT--CACCTCCAACGGCATCGAGTGTGC 517 consensus_6547#0 CAATCA-GCATGCCCGGCTTACCGGAGCCGCCGT--CACCTCCAACGGCATCGAGTGTGC 521 consensus_6547#2 CAATCA-GCATGCCCGGCTTACCGGAGCCGCCGT--CACCTCCAACGGCATCGAGTGTGC 379 ** * ** * *** * * * * *** ** * ** ** *** * consensus_6547#1 C--------TATCGCCCATCATCACCGTACCGGTGCGGTCGTCGCAAACGGTGCCGAGTG 569 consensus_6547#3 ------------------------------------------------------------ consensus_6547#0 CGGCATCGGTGCAGACATCCTGCGGCGCAACGGTTCGGCAGTGGATGCCGCCATCGCAAC 581 consensus_6547#2 CGGCATCGGTGCAGACATCCTGCGGCGCAACGGTTCGGCAGTGGATGCCGCCATCGCAAC 439 consensus_6547#1 TGCCGCGATCGGGGCCCAAATCCTGCGCCAGAATG-GTACCGCCGCCGACGCTGCCATCG 628 consensus_6547#3 ------------------------------------------------------------ consensus_6547#0 ACTATTCTGCGAAGGTGTAACCTGCCCCCAGAGCA-TGGGTCTCGGCGGTGGCTTCCTGG 640 consensus_6547#2 ACTATTCTGCGAAGGTGTAACCTGCCCCCAGAGCATGGGTCCTCGGCGGTGGCTTCCTGG 499 consensus_6547#1 CAACGCTGTTCTGCGAAGGCGT-GACCTGCCCGCAAAGTATGGGCCTGGGCGGTGGCTTT 687 consensus_6547#3 ------------------------------------------------------------ consensus_6547#0 CCACGATCTACATCCGCGACACCAACACGGCCGTGGCGT-TGGACGCACGCGAAGTGGCA 699 consensus_6547#2 CCACGATCTACATCCGCGACACCAACACGGCCGTGGCGT-TGGACGCACGCGAAGTGGCA 558 consensus_6547#1 CTGCTGACCATCTA-------------- 701 consensus_6547#3 ---------------------------- consensus_6547#0 CCGGCCGCC------------------- 708 consensus_6547#2 CCGGCCGCCGCCACCAAGGACATGTACG 586 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||