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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6548#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1189 fasta sequence
[CCCGAGGTTACCAGAGTAAGGTTTTNTGGGGTGCGTTGTGCTTCAATACCTGACGCGCTGTAGACTGGGTAGAACCTGGGGAAAAATGCGCCAGCTGCTACTGCTGGCTGCACTAGTATGGCTGGTGTGCTGTGTATGACCTGTCGATTACAACAAGTACTACTATTCGCGNGAGCCGACTGTTTCGTACTGCTAGCGCAAGTATACACCTGTGTGCCTGAGGAACGAGACGCTGACAGTTTTGAGCGCCCGAGGCAGGATTTAAACCGTTAACCCCAGGTACCGTAACATNTTTCGGGCGGGAGAGAGTGTAGGCTATCGACATCGTACCCCTATCCAGGCTGTCGGACTTNGTCGCCTACGACGGGAAACCGCAACCATTTNTTGGCGGGTAGACCTAACGAGTACAATAAAGCGGAAANTGATNTGGGNGGCACTTAGAATGTTGCTGGGGCCAAACTTGGTACCTTGGGCATTAGAGTGCNNGTTATATGTTAACCACTGTACCCGGCTTNATTAACAGGTATATACTGCTGTAGNTTGNGGAACCGCACGCAATACGGCGGCATTGGCGACCGTGGGTTGGTTATAACCCATTATTATCCCCCANTGACCCCGGAAGTTAAAACTAAACCACTTTGGTCTTGCAATTACCCANAAACGGTTACCTGAAACCCGAAACGCCACAACNNGGCCTGGNGACNTAACGAACTAGTTAGGTACACCACGGTNGACCCCCNATAGTTTAGCAGGGGCAAAANCCTACACTAATTACAATACGAATCCCGGACTTAACNGGGACTGGAGAAANACACGCCATGGGGNCCAAAGCAACCACAGAACNACGGATCACACTAACCACCCGATACAACCAGGTANATGACCNNGCGNTGCGTTCGNTNAGNACNCNGGGGACCTTGGCGCGGCTCATGNCGGCAGGGATTNGGCCCCGGNNCTTGGGNGCTTAAACCACTGNCCCCGGATTGGACTACTTTGCAGATCCCGCTTNTGGCGACACTCCTCANCCCTCCGCAAACAGNAAGCCAGTCTCTCGGTATAGAGACCTACGNAGCCACATCGCAAGCTCCTTATACCGACTGCGACCAACATCTCTGGAGCAGTGGGACAGAGGNNGCTCATACACCGGAGGAANGGCCACACGNTGCCCACGGCGNCGACCATGACGAGG]
[+] EMBL AL693413 [CCCGAGGTTACCAGAGTAAGGTTTTNTGGGGTGCGTTGTGCTTCAATACCTGACGCGCTGTAGACTGGGTAGAACCTGGGGAAAAATGCGCCAGCTGCTACTGCTGGCTGCACTAGTATGGCTGGTGTGCTGTGTATGACCTGTCGATTACAACAAGTACTACTATTCGCGNGAGCCGACTGTTTCGTACTGCTAGCGCAAGTATACACCTGTGTGCCTGAGGAACGAGACGCTGACAGTTTTGAGCGCCCGAGGCAGGATTTAAACCGTTAACCCCAGGTACCGTAACATNTTTCGGGCGGGAGAGAGTGTAGGCTATCGACATCGTACCCCTATCCAGGCTGTCGGACTTNGTCGCCTACGACGGGAAACCGCAACCATTTNTTGGCGGGTAGACCTAACGAGTACAATAAAGCGGAAANTGATNTGGGNGGCACTTAGAATGTTGCTGGGGCCAAACTTGGTACCTTGGGCATTAGAGTGCNNGTTATATGTTAACCACTGTACCCGGCTTNATTAACAGGTATATACTGCTGTAGNTTGNGGAACCGCACGCAATACGGCGGCATTGGCGACCGTGGGTTGGTTATAACCCATTATTATCCCCCANTGACCCCGGAAGTTAAAACTAAACCACTTTGGTCTTGCAATTACCCANAAACGGTTACCTGAAACCCGAAACGCCACAACNNGGCCTGGNGACNTAACGAACTAGTTAGGTACACCACGGTNGACCCCCNATAGTTTAGCAGGGGCAAAANCCTACACTAATTACAATACGAATCCCGGACTTAACNGGGACTGGAGAAANACACGCCATGGGGNCCAAAGCAACCACAGAACNACGGATCACACTAACCACCCGATACAACCAGGTANATGACCNNGCGNTGCGTTCGNTNAGNACNCNGGGGACCTTGGCGCGGCTCATGNCGGCAGGGATTNGGCCCCGGNNCTTGGGNGCTTAAACCACTGNCCCCGGATTGGACTACTTTGCAGATCCCGCTTNTGGCGACACTCCTCANCCCTCCGCAAACAGNAAGCCAGTCTCTCGGTATAGAGACCTACGNAGCCACATCGCAAGCTCCTTATACCGACTGCGACCAACATCTCTGGAGCAGTGGGACAGAGGNNGCTCATACACCGGAGGAANGGCCACACGNTGCCCACGGCGNCGACCATGACGAGG]
consensusID : consensus_6548#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 994 fasta sequence
[CCGCGGCCAGCTCAGCCAGCCAGTATCTTCTGTTTACCAAGCCGCGTGCTAGATAAACCAGTCCAGCGATTTTGGTCATTTATTTGATATAAGTCTCATCGCTGCCTGTGGGCGCGTTCATTAAGTCGAGAATAATCGCACCAGAGTAAGGTTTTTGGGGTGCGTTGTGCTTCAATACCGACGCGCTGTAGACTGGGTGAACCGGGGAAAAATGCGCCAGCTGCTACTGCTGGCTGCACTAGTTGGCGGTGTGCTGTGTATGACCGTCGATTACAACAAGTACTACTATTCGCGGCAGCCCGACCTGTTTCGTCTGCTGCGCAAGTATCACCTGTGGCCGAGGAACGAGACGCTGAAGTTTGAGCGCCCGAGGCAGGATTTAAACGTACCCAGTCCGTTCATTTTCGGCGGCGAGAGTGTGGCTATCGAATCGTACCCCTATCAGCTGTCGCTGCGCCTCGAGGGAACGCACATTTGCGGTGCCTCGGTCATAGCGGAACGATGGGCACTGAGTGCGGCCCACTGTCTGGATGAGGCGTTGTACCCGTCCGCTATAACGTTTCGCGGTGGGACGCCGCATCGGCTGGCGGGTGGTTACATTTTCCATGCCGAGTACTACCTGCTGCATCCAAAGTTCGACCGACGCACGCTGGACTACGATGTGTCCGTGACCCATGTGCGGGAAAGCTTCTTCATCGATCCGATACGGGCGGTAACGCTGGCCAACACCAACACGTACTACCCGATACCGTCGGCCGCGGTCGTGACGGGCTGGGGCTTGGCGGATGCCGATGGGTACGAGCCGCTGATACTGCAATCGCTGGAAATCTACCTCCAACAGAAGCAGTTCTGTTGGACCTCGACCATCGAAGCTCTTACCGATCGACAAATCTGTGGCGGCAGTGGCGTTTACGGGAANGAAACGTGCTACGGCGACAGTGGCGGACCGCTGGTAATGAACNGCTACCAGGTCGGGATAGTGTCGTGGGGCTCG]
[+] EMBL BM622120 [CCGCGGCCAGCTCAGCCAGCCAGTATCTTCTGTTTACCAAGCCGCGTGCTAGATAAACCAGTCCAGCGATTTTGGTCATTTATTTGATATAAGTCTCATCGCTGCCTGTGGGCGCGTTCATTAAGTCGAGAATAATCGCACCAGAGTAAGGTTTTTGGGGTGCGTTGTGCTTCAATACCGACGCGCTGTAGACTGGGTGAACCGGGGAAAAATGCGCCAGCTGCTACTGCTGGCTGCACTAGTTGGCGGTGTGCTGTGTATGACCGTCGATTACAACAAGTACTACTATTCGCGGCAGCCCGACCTGTTTCGTCTGCTGCGCAAGTATCACCTGTGGCCGAGGAACGAGACGCTGAAGTTTGAGCGCCCGAGGCAGGATTTAAACGTACCCAGTCCGTTCATTTTCGGCGGCGAGAGTGTGGCTATCGAATCGTACCCCTATCAGCTGTCGCTGCGCCTCGAGGGAACGCACATTTGCGGTGCCTCGGTCATAGCGGAACGATGGGCACTGAGTGCGGCCCACTGTCTGGATGAGGCGTTGTACCCGTCCGCTATAACGTTTCGCGGTGGGACGCCGCATCGGCTGGCGGGTGGTTACATTTTCCATGCCGAGTACTACCTGCTGCATCCAAAGTTCGACCGACGCACGCTGGACTACGATGTGTCCG ]
[+] EMBL BX623082 [ CTGGGTGAACCGGGGAAAAATGCGCCAGCTGCTACTGCTGGCTGCACTAGTTGGCGGTGTGCTGTGTATGACCGTCGATTACAACAAGTACTACTATTCGCGGCAGCCCGACCTGTTTCGTCTGCTGCGCAAGTATCACCTGTGGCCGAGGAACGAGACGCTGAAGTTTGAGCGCCCGAGGCAGGATTTAAACGTACCCAGTCCGTTCATTTTCGGCGGCGAGAGTGTGGCTATCGAATCGTACCCCTATCAGCTGTCGCTGCGCCTCGAGGGAACGCACATTTGCGGTGCCTCGGTCATAGCGGAACGATGGGCACTGAGTGCGGCCCACTGTCTGGATGAGGCGTTGTACCCGTCCGCTATAACGTTTCGCGGTGGGACGCCGCATCGGCTGGCGGGTGGTTACATTTTCCATGCCGAGTACTACCTGCTGCATCCAAAGTTCGACCGACGCACGCTGGACTACGATGTGTCCGTGACCCATGTGCGGGAAAGCTTCTTCATCGATCCGATACGGGCGGTAACGCTGGCCAACACCAACACGTACTACCCGATACCGTCGGCCGCGGTCGTGACGGGCTGGGGCTTGGCGGATGCCGATGGGTACGAGCCGCTGATACTGCAATCGCTGGAAATCTACCTCCAACAGAAGCAGTTCTGTTGGACCTCGACCATCGAAGCTCTTACCGATCGACAAATCTGTGGCGGCAGTGGCGTTTACGGGAANGAAACGTGCTACGGCGACAGTGGCGGACCGCTGGTAATGAACNGCTACCAGGTCGGGATAGTGTCGTGGGGCTCG]
[+] EMBL AGA284583 [ ACCTGTTTCGTCTGCTGCGCACGTATCACCTGTGGCCGAGGAACGAGACGCTGAAGTTTGAGCGCCCGAGGCAGGATTTAAACGTACCCAGTCCGTTCATTTTCGGCGGCGAGAGTGTGGCTATCGAATCGTACCCCTATCAGCTGTCGCTGCGCCTCGAGGGAACGCACATTTGCGGTGCCTCGGTCATAGCGGAACGATGGGCACTGAGTGCGGCCCACTGTCTGGATGAAGCGTTGTACCCGTCCGCT ]
consensusID : consensus_6548#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 669 fasta sequence
[GAGCATCCACTGCTGGAGCTCGCTTTGTAGAGTATAATGGTCGGTACAATCGTCTGCAACTCCAACCATGACGTGCGGGAATAGTTATCGGGCTGACGGGCCCAGTCCATCCAGCATCCTTCCGTGATAAAGCGGCCAGCTCAGCCAGCCAGTATCTTCTGTTTACCAAGCCGCGTGCTAGATAAACCAGTCCAGCGATTTTGGTCATTTATTTGATATAAGTCTCATCGCTGCCTGTGGGCGCGTTCATTAAGTCGAGAATAATCGCACCAGAGTAAGGTTTTTGGGGTGCGTTGTGCTTCAATACCGACGCGCTGTAGACTGGGTGAACCGGGGAAAAATGCGCCAGCTGCTACTGCTGGCTGCACTAGTTGGCGGTGTGCTGTGTATGACCGTCGGTAAATCGATAGATCGTGAGTTTGAGCCGGAGAGTGCCGTTTGAATTGACCGGTTTGCGGTTTGAATTGCAGATTACAACAAGTACTACTATTCGCGGCAGCCCGACCTGTTTCGTCTGCTGCGCAAGTATCACCTGTGGCCGAGGAACGAGACGCTGAAGTTTGAGCGCCCGAGGCAGGATTTAAACGTACCCAGTCCGTTCATTTTCGGCGGCGAGAGTGTGGCTATCGAATCGTACCCCTATCAGCTGTCGCTGCGCCTCGAGGGCGG]
[-] EMBL BM627448 [GAGCATCCACTGCTGGAGCTCGCTTTGTAGAGTATAATGGTCGGTACAATCGTCTGCAACTCCAACCATGACGTGCGGGAATAGTTATCGGGCTGACGGGCCCAGTCCATCCAGCATCCTTCCGTGATAAAGCGGCCAGCTCAGCCAGCCAGTATCTTCTGTTTACCAAGCCGCGTGCTAGATAAACCAGTCCAGCGATTTTGGTCATTTATTTGATATAAGTCTCATCGCTGCCTGTGGGCGCGTTCATTAAGTCGAGAATAATCGCACCAGAGTAAGGTTTTTGGGGTGCGTTGTGCTTCAATACCGACGCGCTGTAGACTGGGTGAACCGGGGAAAAATGCGCCAGCTGCTACTGCTGGCTGCACTAGTTGGCGGTGTGCTGTGTATGACCGTCGGTAAATCGATAGATCGTGAGTTTGAGCCGGAGAGTGCCGTTTGAATTGACCGGTTTGCGGTTTGAATTGCAGATTACAACAAGTACTACTATTCGCGGCAGCCCGACCTGTTTCGTCTGCTGCGCAAGTATCACCTGTGGCCGAGGAACGAGACGCTGAAGTTTGAGCGCCCGAGGCAGGATTTAAACGTACCCAGTCCGTTCATTTTCGGCGGCGAGAGTGTGGCTATCGAATCGTACCCCTATCAGCTGTCGCTGCGCCTCGAGGGCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6548#1 ------------------------------------------------------------
consensus_6548#2 ---GAGCATCCACTGCTGGAGCTCGCTTTGTAGAGTATAATGGTCGGTACAATCGTCTGC 57
consensus_6548#0 CCCGAGGTTACCAGAGTAAGGTTTTNTGGGGTGCGTTGTGCTTCAATACCTGACGCGCTG 60
consensus_6548#1 ------------------------------------------------------------
consensus_6548#2 AACTCCAACCATGACGTGCGGGAATAGTTATCGGGCTGACGGGCCCAGTCCATCCAGCAT 117
consensus_6548#0 TAGACTGGGTAGAACCTGGGGAAAAATGCGCCAGCTGCTACTGCTGGCTGCACTAGTATG 120
consensus_6548#1 ------------C-CGCGGCCAGCTCAGC-CAGCCAGTATCTTCTGTTTAC-CAAGCCGC 45
consensus_6548#2 CCTTCCGTGATAA-AGCGGCCAGCTCAGC-CAGCCAGTATCTTCTGTTTAC-CAAGCCGC 174
consensus_6548#0 GCTGGTGTGCTGTGTATGACCTGTCGATTACAACAAGTA-CTACTATTCGCGNGAGCCGA 179
* ** * * ** * **** ** ** ** * *****
consensus_6548#1 GTGCTAGATAA-ACCAGTCCAGCGATTTTGGTCATTTATTTGATATAAGTCTCATCGCTG 104
consensus_6548#2 GTGCTAGATAA-ACCAGTCCAGCGATTTTGGTCATTTATTTGATATAAGTCTCATCGCTG 233
consensus_6548#0 CTGTTTCGTACTGCTAGCGCAAGTATAC-ACCTGTGTGCCTGAGGAACGAGACGCTGACA 238
** * ** * ** ** ** * * *** * * * *
consensus_6548#1 CCTGTGGGCGCGTTCATTAAG-TCGAGAATAATCGCACCAGA----GTAAGGTTTTTGGG 159
consensus_6548#2 CCTGTGGGCGCGTTCATTAAG-TCGAGAATAATCGCACCAGA----GTAAGGTTTTTGGG 288
consensus_6548#0 GTTTTGAGCGCCCGAGGCAGGATTTAAACCGTTAACCCCAGGTACCGTAACATNTTTCGG 298
* ** **** * * * * * * * **** **** * *** **
consensus_6548#1 GTGCGTTGTGCTTCAATACCGACGCGCTGTAGACTGGGTGAACCGGGGAAAAATGCGCCA 219
consensus_6548#2 GTGCGTTGTGCTTCAATACCGACGCGCTGTAGACTGGGTGAACCGGGGAAAAATGCGCCA 348
consensus_6548#0 GCGGGAGAGAGTGTAGGCTATCGACATCGTACCCCTATCCAGGCTGTCGGAC-TTNGTCG 357
* * * * * * *** * * * * * * * *
consensus_6548#1 GCTGCTACTGCTGGCTGCA-CTAGTTGGCGGTGTGCTGTGTATGACCGTCG--------- 269
consensus_6548#2 GCTGCTACTGCTGGCTGCA-CTAGTTGGCGGTGTGCTGTGTATGACCGTCGGTAAATCGA 407
consensus_6548#0 CCTACGACGGGAAACCGCAACCATTTNTTGGCG-GGTAGACCTAACGAGTACAATAAAGC 416
** * ** * * *** * * ** ** * * * * **
consensus_6548#1 ------------------------------------------------------------
consensus_6548#2 TAGATCGTGAGTTTGAGCCGGAGAGTGCCGTTTGAATTGACCGGTTTGCGGTTTGAATTG 467
consensus_6548#0 GGAAANTGATNTGGGNGGCACTTAGAATGTTGCTGGGGCCAAACTTGGTACCTTGGGCAT 476
consensus_6548#1 ---ATTACAACAAGTACTACTATTCGCGGCAGCCCGACCTGTTTCGTCTGC-TGCGCAAG 325
consensus_6548#2 CAGATTACAACAAGTACTACTATTCGCGGCAGCCCGACCTGTTTCGTCTGC-TGCGCAAG 526
consensus_6548#0 TAGAGTGCNNGTTATA-TGTTAACCACTGTA-CCCGGCTTNATTAACAGGTATATACTGC 534
* * * ** * ** * * * * **** * * ** * * *
consensus_6548#1 TATCACCTGTGGCCGAGGAACGAGACGCTGAAGTTTGAGCGCCCGAGGCAGGATTTAAAC 385
consensus_6548#2 TATCACCTGTGGCCGAGGAACGAGACGCTGAAGTTTGAGCGCCCGAGGCAGGATTTAAAC 586
consensus_6548#0 TGTAGNTTGNGGA-ACCGCACGCAATACGGCGGCATTGGCGACCGTGGGTTGGTTATAAC 593
* * ** ** * *** * * * * * *** *** ** * ** ***
consensus_6548#1 GTACCCAGTCCGTTCATT---TTCGGCGGCGAGAGTGTGGCTA-TCGAATCGTACC---- 437
consensus_6548#2 GTACCCAGTCCGTTCATT---TTCGGCGGCGAGAGTGTGGCTA-TCGAATCGTACC---- 638
consensus_6548#0 CCATTATTATCCCCCANTGACCCCGGAAGTTAAAACTAAACCACTTTGGTCTTGCAATTA 653
* * ** * *** * * * * * * ** * *
consensus_6548#1 CCTATCAGCTGTCGC-TGCGCCTCGAGGGAACGCACATTTGCGGTGCCTCGGTCATAGCG 496
consensus_6548#2 CCTATCAGCTGTCGC-TGCGCCTCGAGGGCGG---------------------------- 669
consensus_6548#0 CCCANAAACGGTTACCTGAAACCCGAAACGCCACA-ACNNGGCCTGGNGACNTAACGAAC 712
** * * * ** * ** * ***
consensus_6548#1 GAACGATGGGCACTGAGTGCGGCCCACTGTCTGGATGAGGCGTTGTACCCGTCCGCTATA 556
consensus_6548#2 ------------------------------------------------------------
consensus_6548#0 TAGTTAGGTACACCACGGTNGACCCCCNATAGTTTAGCAGGGGCAAAANCCTACACTA-A 771
consensus_6548#1 ACGTTTCGCGGTGGGACGCCGCATCGGCTGGCGGGTGGTTACATTTTCCATGCCGAGTAC 616
consensus_6548#2 ------------------------------------------------------------
consensus_6548#0 TTACAATACGAATCCCGGACTTAACNGGGACTGGAGAAANACACGCCATGGGGNCCAAAG 831
consensus_6548#1 TACCTGCTGCATCCAAAGTTCGACCGACGCACGCTGGACTACGATGTGTCCGTGACCCAT 676
consensus_6548#2 ------------------------------------------------------------
consensus_6548#0 CAACCACAGAACNACGGATCACACTAAC-CACCCGATACAACCAGGTANATGACCNNGCG 890
consensus_6548#1 GTGCGGGAAAGCTTCTTCATCGATCCGATACGGGCGGTAACGCTGGCCAACACCAACACG 736
consensus_6548#2 ------------------------------------------------------------
consensus_6548#0 NTGCGTTCGNTNAGNACNCNGGGGACCTTGGCGCGGCTCATGNCGGCAGGGATTNGGCCC 950
consensus_6548#1 TACTACCCGATACCGTCGGCCGCGGTCGTGACGGGCTGGGGCTTGGCGGATGCCGATGGG 796
consensus_6548#2 ------------------------------------------------------------
consensus_6548#0 CGGNNCTTGGGNGCTTAAACCACTGNCCCCGGATTGGACTACTTTGCAGATCCCGCTTNT 1010
consensus_6548#1 TACGA-GCCGCTGATACTGCAATCGCTGGAAATCTACCTCCAACAGAAGCAGTTCTGTTG 855
consensus_6548#2 ------------------------------------------------------------
consensus_6548#0 GGCGACACTCCTCANCCCTCCGCAAACAGNAAGCCAGTCTCTCGGTATAGAGACCTACGN 1070
consensus_6548#1 GACCTCGACCATCGAAGCTCTTACCGATCGACAAATCTGTGGCGGCAGTGGCGTTTACGG 915
consensus_6548#2 ------------------------------------------------------------
consensus_6548#0 AGCCACATCGCAAGCTCCTTATACCGACTGCGACCAACATCTCTGGAGCAGTGGG-ACAG 1129
consensus_6548#1 GAANGAAACGTGCTACGGCGACAGTGGCGGACCGCTGGTAATGAACNGCTACCAGGTCGG 975
consensus_6548#2 ------------------------------------------------------------
consensus_6548#0 AGGNNGCTCATACACCGGAGG-AANGGCCACACGNTGCCCACGG-CGNCGACCATGACGA 1187
consensus_6548#1 GATAGTGTCGTGGGGCTCG 994
consensus_6548#2 -------------------
consensus_6548#0 GG----------------- 1189
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||