These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6558#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 927 fasta sequence [TTAGTTAAATAAGGAAGCTCTGCATAAGTATGTTCTGCAGGAGGAAGGGTATGGTATCATTCAATTGATGATGATAATTGTATAGGGAAAGCTGGAGTTCGTTGAGTGATTATACTTTCTCAAATAATAAATAAAAAGTATAAAATAGCGAATAATGAGATTGTACTACCTAAAGAAGAAACTACATTTCATGTTAAATAGCTATCTGGAAAGTCTGAGTATCGTCGAGGTATTCCGGCTAAACCTAAAAAATGTTGAGGAAAAAATGTTAAATTTACTCCTACAAATATAATAGAAAATTGAATTTTTAATCAAGTTGGATTTATTGTTAATCCTGTTAATAATGGATATCAATGTACAAATCCTGCTATAATAGCAAATACTGCTCCTATTGATAGTACATAATGGAAATGAGCAACAACATAATAAGTATCGTGAAGAACAATATCAATAGATGAATTAGCTAGTACAACTCCTGTTAGACCACCAACTGTAAATAAGAAAACGAATCCAAATGCTCACAATATAGCTGGGCTATAAGTTAATTGTGTTCCGTGTAATGTAGCTAATCAACTAAAAATCTTAATTCCAGTTGGCACAGCAATAATTATAGTTGCTGATGTAAAGTAAGCTCGAGTATCAACGTTTATTCCAACTGTAAATATATGATGAGCTCAAACAATAAATCCAAGTAAACCAATTGCTAGTATAGCATAGATTATTCCTAAGTTTCCAAATGTTTCCTTCTTTCCACTTTCTTGAGGTAATAATATGTGAAATTATTCCGAATCCAGGTAAAATTAAAATATATACTTCTGGATGACCAAAAAATCAGAATAAGTGTTGATATAAAATTGGATCACCTCCTCCTGCTGGATCAAAGCCAGTAGGCCAACAGTGCTCGAGGAATTCCGCAGCTTTTGGGGG] [+] EMBL CNS09RAM [TTAGTTAAATAAGGAAGCTCTGCATAAGTATGTTCTGCAGGAGGAAGGGTATGGTATCATTCAATTGATGATGATAATTGTATAGGGAAAGCTGGAGTTCGTTGAGTGATTATACTTTCTCAAATAATAAATAAAAAGTATAAAATAGCGAATAATGAGATTGTACTACCTAAAGAAGAAACTACATTTCATGTTAAATAGCTATCTGGAAAGTCTGAGTATCGTCGAGGTATTCCGGCTAAACCTAAAAAATGTTGAGGAAAAAATGTTAAATTTACTCCTACAAATATAATAGAAAATTGAATTTTTAATCAAGTTGGATTTATTGTTAATCCTGTTAATAATGGATATCAATGTACAAATCCTGCTATAATAGCAAATACTGCTCCTATTGATAGTACATAATGGAAATGAGCAACAACATAATAAGTATCGTGAAGAACAATATCAATAGATGAATTAGCTAGTACAACTCCTGTTAGACCACCAACTGTAAATAAGAAAACGAATCCAAATGCTCACAATATAGCTGGGCTATAAGTTAATTGTGTTCCGTGTAATGTAGCTAATCAACTAAAAATCTTAATTCCAGTTGGCACAGCAATAATTATAGTTGCTGATGTAAAGTAAGCTCGAGTATCAACGTTTATTCCAACTGTAAATATATGATGAGCTCAAACAATAAATCCAAGTAAACCAATTGCTAGTATAGCATAGATTATTCCTAAGTTTCCAAATGTTTCCTTCTTTCCACTTTCTTGAGGTAATAATATGTGAAATTATTCCGAATCCAGGTAAAATTAAAATATATACTTCTGGATGACCAAAAAATCAGAATAAGTGTTGATATAAAATTGGATCACCTCCTCCTGCTGGATCAAAGCCAGTAGGCCAACAGTGCTCGAGGAATTCCGCAGCTTTTGGGGG] consensusID : consensus_6558#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGAAGTTTACAACCCTGCTGGCCGTTCTAATCGCACTACTCGCCTGTGCACGGGCACACGCAGAGCGACGCCATAAACTTACACGTCCAGTGCACAGATTCACCCCGAATGGACCATACCTGGCTGGCAAACGGATTGTCGGTGGATTTGTGATCGATATCTCGGATGCACCCTATCAGATTTCGCTACAGTACGACGACGACCATAACTGTGGAGGCTCTATCCTGAGTAGCAAGTGGATCCTAACCGCAGCGCACTGCATCAACGATAACGCACCCTCGAAGCCAACCGTACGCGTAGGATCGTCCGAACATGCATCTGGCGGAACGGTCATACGTGTAGCTCGTATTGTGCCTCATCCTATGCATGGTAGCAAGAACAACTACGACATTGCCCTACTGGAGTTGAAAAACGAGCTTACGTTTAGCGAAAAGGTTCAACCCATTGCACTGCCGGAACAGGATGAACCGATCGAGGAAGGAACGATGGGAATCGTCTCTGGTTGGGGTTTAACACTGAGTGAGGCCGATTCGAACGATGTTCTACGAGCGACAAACGTACCGACCGTTAACCAGCAGGAATGTAACAAAGCCTACCAGTCCAGGTACGGTGGCATTACCGCTCAAATGTTTTGTGCGGGGTACA] [+] EMBL BM622300 [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGAAGTTTACAACCCTGCTGGCCGTTCTAATCGCACTACTCGCCTGTGCACGGGCACACGCAGAGCGACGCCATAAACTTACACGTCCAGTGCACAGATTCACCCCGAATGGACCATACCTGGCTGGCAAACGGATTGTCGGTGGATTTGTGATCGATATCTCGGATGCACCCTATCAGATTTCGCTACAGTACGACGACGACCATAACTGTGGAGGCTCTATCCTGAGTAGCAAGTGGATCCTAACCGCAGCGCACTGCATCAACGATAACGCACCCTCGAAGCCAACCGTACGCGTAGGATCGTCCGAACATGCATCTGGCGGAACGGTCATACGTGTAGCTCGTATTGTGCCTCATCCTATGCATGGTAGCAAGAACAACTACGACATTGCCCTACTGGAGTTGAAAAACGAGCTTACGTTTAGCGAAAAGGTTCAACCCATTGCACTGCCGGAACAGGATGAACCGATCGAGGAAGGAACGATGGGAATCGTCTCTGGTTGGGGTTTAACACTGAGTGAGGCCGATTCGAACGATGTTCTACGAGCGACAAACGTACCGACCGTTAACCAGCAGGAATGTAACAAAGCCTACCAGTCCAGGTACGGTGGCATTACCGCTCAAATGTTTTGTGCGGGGTACA] consensusID : consensus_6558#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 635 fasta sequence [CCGCCCACGCGTCCGAGCAGGAATAGTTATTTCGTCATTTTTGAATTCTCATCTACAAGCATCATGCTACGAAAGGTCTTTGCTGTTGTCTCGGTACTCCTGGTAGTAAGTGCAGCCAAGGTGACAAAACTGGTGCTGGACGACCACTACGTCAACCGAGTGGTTGGAGGAGAGGTAGCGAAGAACGGCTCGGCCCCGTACCAGGTATCGCTGCAGGTTCCCGGCTGGGGTCACAACTGTGGAGGATCGCTGCTTAACAATCGATGGGTACTAACGGCAGCACACTGTCTGGTCGGCTATGAGCCCAGTGATTTGATGGTACTCGTCGGCACAAACAGTCTCAAGGAGGGAGGCGAACTGCTGAAGGTTGACAAGCTGCTGTACCACAGCCGTTACAATCGTCCCCAGTTCCACAATGACATCGGATTGATGCGGCTGGAGCAACCGGTACAGTTCTCGGAGCTTGTGCAGAGTGTAGAGTACCTGGAGAAGGCGGTCCCGGTCAATGCGACGGTGCGATTGACGGGTTGGGGTCGTACCAGCACTAATGGGAATGTTCCCACGCTACTCCAGAGCCTGAATGTTGTAACGCTGTCGAACGAAGACTGCAAGGCAAAGATGGGCAATCCGGAGAA] [+] EMBL BM612983 [CCGCCCACGCGTCCGAGCAGGAATAGTTATTTCGTCATTTTTGAATTCTCATCTACAAGCATCATGCTACGAAAGGTCTTTGCTGTTGTCTCGGTACTCCTGGTAGTAAGTGCAGCCAAGGTGACAAAACTGGTGCTGGACGACCACTACGTCAACCGAGTGGTTGGAGGAGAGGTAGCGAAGAACGGCTCGGCCCCGTACCAGGTATCGCTGCAGGTTCCCGGCTGGGGTCACAACTGTGGAGGATCGCTGCTTAACAATCGATGGGTACTAACGGCAGCACACTGTCTGGTCGGCTATGAGCCCAGTGATTTGATGGTACTCGTCGGCACAAACAGTCTCAAGGAGGGAGGCGAACTGCTGAAGGTTGACAAGCTGCTGTACCACAGCCGTTACAATCGTCCCCAGTTCCACAATGACATCGGATTGATGCGGCTGGAGCAACCGGTACAGTTCTCGGAGCTTGTGCAGAGTGTAGAGTACCTGGAGAAGGCGGTCCCGGTCAATGCGACGGTGCGATTGACGGGTTGGGGTCGTACCAGCACTAATGGGAATGTTCCCACGCTACTCCAGAGCCTGAATGTTGTAACGCTGTCGAACGAAGACTGCAAGGCAAAGATGGGCAATCCGGAGAA] [+] EMBL BM604796 [CCGCCCACGCGTCCGAGCAGGAATAGTTATTTCGTCATTTTTGAATTCTCATCTACAAGCATCATGCTACGAAAGGTCTTTGCTGTTGTCTCGGTACTCCTGGTAGTAAGTGCAGCCAAGGTGACAAAACTGGTGCTGGACGACCACTACGTCAACCGAGTGGTTGGAGGAGAGGTAGCGAAGAACGGCTCGGCCCCGTACCAGGTATCGCTGCAGGTTCCCGGCTGGGGTCACAACTGTGGAGGATCGCTGCTTAACAATCGATGGGTACTAACGGCAGCACACTGTCTGGTCGGCTATGAGCCCAGTGATTTGATGGTACTCGTCGGCACAAACAGTCTCAAGGAGGGAGGCGAACTGCTGAAGGTTGACAAGCTGCTGTACCACAGCCGTTACAATCGTCCCCAGTTCCACAATGACATCGGATTGATGCGGCTGGAGCAACCGGTACAGTTCTCGGAGCTTGTGCAGAGTGTAGAGTACCTGGAGAAGGCGGTCCCGGTCAATGCGACGGTGCGATTGACGGGTTG ] consensusID : consensus_6558#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 587 fasta sequence [GTACAATGTAGAAAGAAGCTCAGATTTGTTGCTACGTCGAGAGAGGTTCCAGGTTTTTGGAGAGTTCGATAACTTCAACCCAACCAAACCGATGTGTCACACATGTGCCAGTGCAGTTATGCTGCATTGTCAATCGCCCCATCTCCTCACTAGCAACACAACACACGACCTTATATGCAATCTACTGAGACACACACATACACGCGAGTTGTAGCCAAAATACAATTGATCGAAGCAAAGGGTAAGTTTGCAGAAGTATATCCTCTGTCTTGTTGAAGTTGTTGAAGCAAAAAGTAGCCCAGAACGATCAACAAGCAAACCATCTCTCTAGCCTAGCCTACTCTAGCACAGTGGATGTAATCCAACGACTAATATAATGCGTAAGCTATTGTTTCTCTCACTCTCTCTCTCTCTCTCGTCTGTAATCGCTGTAATGATGTTTCCTTGATTGTTAAAACAAACATACACACACACACGCGTTACATGTAACGGTCGGGGGACCCTCACAAGGAGAAGGGAACAAGGAGGGCAGATGATAATGAACCGCCGCGTGTTTTTCGATTAGCAACGGAACTGGTTGATGGTAG] [+] EMBL BX609402 [GTACAATGTAGAAAGAAGCTCAGATTTGTTGCTACGTCGAGAGAGGTTCCAGGTTTTTGGAGAGTTCGATAACTTCAACCCAACCAAACCGATGTGTCACACATGTGCCAGTGCAGTTATGCTGCATTGTCAATCGCCCCATCTCCTCACTAGCAACACAACACACGACCTTATATGCAATCTACTGAGACACACACATACACGCGAGTTGTAGCCAAAATACAATTGATCGAAGCAAAGGGTAAGTTTGCAGAAGTATATCCTCTGTCTTGTTGAAGTTGTTGAAGCAAAAAGTAGCCCAGAACGATCAACAAGCAAACCATCTCTCTAGCCTAGCCTACTCTAGCACAGTGGATGTAATCCAACGACTAATATAATGCGTAAGCTATTGTTTCTCTCACTCTCTCTCTCTCTCTCGTCTGTAATCGCTGTAATGATGTTTCCTTGATTGTTAAAACAAACATACACACACACACGCGTTACATGTAACGGTCGGGGGACCCTCACAAGGAGAAGGGAACAAGGAGGGCAGATGATAATGAACCGCCGCGTGTTTTTCGATTAGCAACGGAACTGGTTGATGGTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6558#1 ------------------------------------------------------------ consensus_6558#2 ------------------------------------------------------------ consensus_6558#3 ------------------------------------------------------------ consensus_6558#0 TTAGTTAAATAAGGAAGCTCTGCATAAGTATGTTCTGCAGGAGGAAGGGTATGGTATCAT 60 consensus_6558#1 ------------------------------------------------------------ consensus_6558#2 ------------------------------------------------------------ consensus_6558#3 ------------------------------------------------------------ consensus_6558#0 TCAATTGATGATGATAATTGTATAGGGAAAGCTGGAGTTCGTTGAGTGATTATACTTTCT 120 consensus_6558#1 ------------------------------------------------------------ consensus_6558#2 ------------------------------------------------------------ consensus_6558#3 ------------------------------------------------------------ consensus_6558#0 CAAATAATAAATAAAAAGTATAAAATAGCGAATAATGAGATTGTACTACCTAAAGAAGAA 180 consensus_6558#1 -----------------------------------------CCGCCCACGCGT-CCGCCC 18 consensus_6558#2 -----------------------------------------CCGCCCACGCGT-CCGAGC 18 consensus_6558#3 ------------------------------------------------------------ consensus_6558#0 ACTACATTTCATGTTAAATAGCTATCTGGAAAGTCTGAGTATCGTCGAGGTATTCCGGCT 240 consensus_6558#1 ACGCGTCCGCCCACGCGTCCG---AAGTTTACAACCCTGCTGGCCGTTCTAATCGCACTA 75 consensus_6558#2 AGGAATA-GTTATTTCGTC-----ATTTTTGAATTCTCATCTACAAGCATCATGCTACGA 72 consensus_6558#3 ----------------------------------------------GTACAATGTAGAAA 14 consensus_6558#0 AAACCTAAAAAATGTTGAGGAAAAAATGTTAAATTTACTCCTACAAATATAATAGAAAAT 300 ** consensus_6558#1 CTCGCCTGTGCACG---GGCACACGCAGAGCGACGCCATAAACTTACACGTCCAGTGCAC 132 consensus_6558#2 AAGGTCTTTGC-TG---TTGTCTCGGTACTCCTGGTAGTAAG--TGCAGCCAAGGTGACA 126 consensus_6558#3 GAAGCTCAGATTTG---TTGCTACGTCGAGAGAGGTTCCAGGTTTTTGGAGAGTTCGATA 71 consensus_6558#0 TGAATTTTTAATCAAGTTGGATTTATTGTTAATCCTGTTAATAATGGATATCAATGTACA 360 * * consensus_6558#1 AGATTCACCCCGAATGGACCATACCTGGCTGGCAAACGGATTGTCGGTGGATTTGTGATC 192 consensus_6558#2 AAACTGGTGCTGGACGACCACTAC---GTCAACCGAGTGGTTGGAGGAGAGGTAGCGAAG 183 consensus_6558#3 ACTTCAACCCAACCAAACCGATGT---GTCACACATG----TGCCAGTGCAGTTATGCTG 124 consensus_6558#0 AATCCTGCTATA-ATAGCAAATACTGCTCCTATTGATAGTACATAATGGAAATGAGCAAC 419 * * * * consensus_6558#1 GATATCTCGGATGCACCCTATCAGATTTCGCTACA-G---TACGACGACGACCATAA-CT 247 consensus_6558#2 AACGGCTCGG---CCCCGTACCAGGTATCGCTGCA-GGTTCCCGGCTGGGGTCACAA-CT 238 consensus_6558#3 CATTG-TCAATCGCCCCATCTCCTCACTAGCAACACAACACACGACCTTATATGCAATCT 183 consensus_6558#0 AACATAATAAGTATCGTGAAG-AACAATATCAATAGATGAATTAGCTAGTACAACTCCTG 478 * * * * * consensus_6558#1 GTGGAGGCTCTATCCTGAGTAGCAAGTGGATCCTAACCGCAGCGCACTGCATCAACGATA 307 consensus_6558#2 GTGGAGGATCGCTGCTTAACAATCGATGGGTACTAACGGCAGCACACTGTCTGGTCGGCT 298 consensus_6558#3 ACTGAGACACACACATACACGCGAGTTGTAGCCAAAATACAATTGATCGAAGCAAAGGGT 243 consensus_6558#0 TTAGACCACCAACTGTAAATAAGAAAACGAATCCAAATGCT-CACAATATAGC-TGGGCT 536 ** * * * ** * * * consensus_6558#1 ACGCACCCTCGAAGCCAACCGTA--CGCGTAGG--ATCGTCCGAACATGCATCTGGCGG- 362 consensus_6558#2 ATGAGCCCAGTGATTTGATGGTA--CTCGTCGG--CACAAACAGTCTCAAGGAGGGAGGC 354 consensus_6558#3 AAGTTTGCAGAAGTATATCCTCTGTCTTGTTGA--AGTTGTTGAAGCAAAAAGTAGCCCA 301 consensus_6558#0 ATAAGTTAATTGTGTTCCGTGTAATGTAGCTAATCAACTAAAAATCTTAATTCCAGTTG- 595 * * * consensus_6558#1 -AACGGTCATACGTGTAGCTCGTATTGTGCCTCATCCTATGCA-TGGTAGCAAGAACAAC 420 consensus_6558#2 GAACTGCTGAAGGTTGACAAGCTGCTGTACCACAGCCGTTACAATCGTCCCCAGTTCCAC 414 consensus_6558#3 GAACGATCAACAAGCAAACCATCTCTCTAGCCTAGCCTACTCTAGCACAGTGGATGTAAT 361 consensus_6558#0 GCACAGCAATAATTATAGTTGCTGATGTAAAGTAAGCTCGAGTATCAACGTTTATTCCAA 655 ** * * * * * * consensus_6558#1 TACGACATTGCCCTACTGGAGTTGAAAAACGAGCTTACGTTTAGCGAAAAGGTTCAACCC 480 consensus_6558#2 AATGACATCGGATTGATGCGGCTGGAGCAACCGGTACAGTTCTCGGAGCTTGTGCAGAGT 474 consensus_6558#3 CCAACGACTAATATAATGCGTAAGCTATTGTTTCTCTCACTCTCTCTCTCTCTCTCGTCT 421 consensus_6558#0 CTGTAAATATATGATGAGCTCAAACAATAAATCCAAGTAAACCAATTGCTAGTATAGCAT 715 * * * consensus_6558#1 ATTGCACTGCCGGAA--CAGGATGAACCGATCGAGGAAGGAACGATGGGAATCGTCTCTG 538 consensus_6558#2 GTAGAGTACCTGGAG--AAGGCGGTCCCGGTCAATGCG---ACGGTGCGATTGA---CGG 526 consensus_6558#3 GTA--ATCGCTGTAAT-GATGTTTCCTTGATTGTTAAAACAAACATACACACACACACGC 478 consensus_6558#0 AGATTATTCCTAAGTTTCCAAATGTTTCCTTCTTTCCAC--TTTCTTGAGGTAATAATAT 773 * * * consensus_6558#1 GTTGGGGTT----TAACACTGAGTGAGGCCGATTCGAACGATGTTCTACGAGC-GACAAA 593 consensus_6558#2 GTTGGGGTCGTACCAGCACT-AATGGGAATG-TTCCCACGCTACTCCAGAGCCTGAATGT 584 consensus_6558#3 GTTACATGT-----AACGGT---CGGGG--GACCCTCACAAGGAGAAGGGAACAAGGAGG 528 consensus_6558#0 GT-GAAATTATTCCGAATCCAGGTAAAATTAAAATATATACTTCTGGATGACCAAAAAAT 832 ** * * consensus_6558#1 CGTACCGACCGTTAACCAGCAGGAATGTAACAA--AGCCTACCAGTCCAGGTACGGTGGC 651 consensus_6558#2 TGTAACG-CTGTCGAACGAAGACTGCAAGGCAA--AGATGGGCAATCCGGAGAA------ 635 consensus_6558#3 GCAGATGATAATGAACCGCCGCGTGTTTTTCGATTAGCAACGGAACTGGTTGATGGTAG- 587 consensus_6558#0 CAGAATAAGTGTTGATATAAAATTGGATCACCTCCTCCTGCTGGATCAAAGCCAGTAGGC 892 * * * consensus_6558#1 ATTACCGCTCAAATGTTTTGTGCGGGGTACA---- 682 consensus_6558#2 ----------------------------------- consensus_6558#3 ----------------------------------- consensus_6558#0 CAACAGTGCTCGAGGAATTCCGCAGCTTTTGGGGG 927 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||