These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6563#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 678 fasta sequence [TAACCAACTCCGAACGTTGGTTGGGTGGGCTAGACGATCAGCTTAAAATGCAAGAAGTGGTTCCAATCGTGTACCGTGAAATACTGGAACACGACAACGTTACCTTCCACGAGCACAACTCTACCATGTCGTACGTCACCAGAAGGCGTCTAGTGTTTTTACCCGATCGTAATGTTCCAGGCATACTTAATAAAACCATCATCGTGCCAAACATTTCATTGCTTGGTGTAGCCGCGAGGATGGAAAACGACAACTTCTTCATGAAGCGAGGATTCAATTTCATTTACTCCATGTCTGGGGATACTGTATTCAGCCGCATGACAATCTATGACTACTTATGGAACACGAGACCACCATTCTTGGACCAGGCTAGAAAGTTTGTCCCGGGAATGGTGCCATCAGATAATGTGGGCGTTTTGAAAACGATGTACGAGGATCACGAGGATCACGTAAATGTACGGCATGGAAAGCGGTACGGCGATGATCAATTTTTCATGATGAACACTTACGAGTACGAACCCACGGTGCCGGGCTTCAGTCTCGCCAAGGGCGACTGTTTTGCTTCCATTCTGAACTCCTCCGAAGGAGCTACCTATCCACAAAACTTGGACGAACAATCGGTGCTGATCTACTGGCGCAAGACACTCTGCAGGGCAGTGCCACTGTACTTTGAGCGAC] [+] EMBL BX605965 [TAACCAACTCCGAACGTTGGTTGGGTGGGCTAGACGATCAGCTTAAAATGCAAGAAGTGGTTCCAATCGTGTACCGTGAAATACTGGAACACGACAACGTTACCTTCCACGAGCACAACTCTACCATGTCGTACGTCACCAGAAGGCGTCTAGTGTTTTTACCCGATCGTAATGTTCCAGGCATACTTAATAAAACCATCATCGTGCCAAACATTTCATTGCTTGGTGTAGCCGCGAGGATGGAAAACGACAACTTCTTCATGAAGCGAGGATTCAATTTCATTTACTCCATGTCTGGGGATACTGTATTCAGCCGCATGACAATCTATGACTACTTATGGAACACGAGACCACCATTCTTGGACCAGGCTAGAAAGTTTGTCCCGGGAATGGTGCCATCAGATAATGTGGGCGTTTTGAAAACGATGTACGAGGATCACGAGGATCACGTAAATGTACGGCATGGAAAGCGGTACGGCGATGATCAATTTTTCATGATGAACACTTACGAGTACGAACCCACGGTGCCGGGCTTCAGTCTCGCCAAGGGCGACTGTTTTGCTTCCATTCTGAACTCCTCCGAAGGAGCTACCTATCCACAAAACTTGGAC ] [+] EMBL BX625990 [ GTACCGTGAAATACTGGNACNCGACAACGTTACCTTCCACGAGCACAACTCTACCATGTCGTACGTCACCAGAAGGCGTCTAGTGTTTTTACCCGATCGTAATGTTCCAGGCATACTTAATAAAACCATCATCGTGCCAAACATTTCATTGCTTGGTGTAGCCGCGAGGATGGAAAACGACAACTTCTTCATGAAGCGAGGATTCAATTTCATTTACTCCATGTCTGGGGATACTGTATTCAGCCGCATGACAATCTATGACTACTTATGGAACACGAGACCACCATTCTTGGACCAGGCTAGAAAGTTTGTCCCGGGAATGGTGCCATCAGATAATGTGGGCGTTTTGAAAACGATGTACGAGGATCACGAGGATCACGTAAATGTACGGCATGGAAAGCGGTACGGTGATGATCAATTTTTCATGATGAACACTTACGAGTACGAACCCACGGTGCCGGGCTTCAGTCTCGCCAAAGGCGACTGTTTTGCTTCCATTCTGAACTCCTCCGAAGGAGCTACCTATCCACAAAACTTGGACGAACAATCGGTGCTGATCTACTGGCGCAAGACACTCTGCAGGGCAGTGCCACTGTACTTTGAGCGAC] consensusID : consensus_6563#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 646 fasta sequence [CGACCCACGCGTCCGCATGAAGCGAGGATTCAATTTCATTTACTCCATGTCTGGGGATACTGTATTCAGCCGCATGACAATCTATGACTACTTATGGAACACGAGACCACCATTCTTGGACCAGGCTAGAAAGTTTGTCCCGGGAATGGTGCCATCAGATAATGTGGGCGTTTTGAAAACGATGTACGAGGATCACGAGGATCACGTAAATGTACGGCATGGAAAGCGGTACGGTGATGATCAATTTTTCATGATGAACACTTACGAGTACGAACCCACGGTGCCGGGCTTCAGTCTCGCCAAGGGCGACTGTTTTGCTTCCATTCTGAACTCCTCCGAAGGAGCTACCTATCCACAAAACTTGGACGAACAATCGGTGCTGATCTACTGGCGCAAGACACTCTGCAGGGCAGTGCCACTGTACTTTGAGCGACGAGTGCAGAAAGGTCCACTAACGGGGTATAAGTACGTGCTACCCGATAATTCGTACGATCGTCTGCCAGACAGTGACGCTGACTGCTACAAAGGCCAGTTCGGATTACTTGAGGATGGAATGACGGACACCTCCAATGTTCCCCATGATGTTCCAATCGTAGCTACAAGTCCACACTTTTATGCACGCAACTTCTCCAACGCCCATAAGATT] [+] EMBL BM648020 [CGACCCACGCGTCCGCATGAAGCGAGGATTCAATTTCATTTACTCCATGTCTGGGGATACTGTATTCAGCCGCATGACAATCTATGACTACTTATGGAACACGAGACCACCATTCTTGGACCAGGCTAGAAAGTTTGTCCCGGGAATGGTGCCATCAGATAATGTGGGCGTTTTGAAAACGATGTACGAGGATCACGAGGATCACGTAAATGTACGGCATGGAAAGCGGTACGGTGATGATCAATTTTTCATGATGAACACTTACGAGTACGAACCCACGGTGCCGGGCTTCAGTCTCGCCAAGGGCGACTGTTTTGCTTCCATTCTGAACTCCTCCGAAGGAGCTACCTATCCACAAAACTTGGACGAACAATCGGTGCTGATCTACTGGCGCAAGACACTCTGCAGGGCAGTGCCACTGTACTTTGAGCGACGAGTGCAGAAAGGTCCACTAACGGGGTATAAGTACGTGCTACCCGATAATTCGTACGATCGTCTGCCAGACAGTGACGCTGACTGCTACAAAGGCCAGTTCGGATTACTTGAGGATGGAATGACGGACACCTCCAATGTTCCCCATGATGTTCCAATCGTAGCTACAAGTCCACACTTTTATGCACGCAACTTCTCCAACGCCCATAAGATT] consensusID : consensus_6563#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGGCGTTCCTGCAGCAAACATCTTATCGCGGCCCGGGTTATTTCATTGCTTGGTGTAGCCGCGAGGATGGAAAACGACAACTTCTTCATGAAGCGAGGATTCAATTTCATTTACTCCATGTCTGGGGATACTGTATTCAGCCGCATGACAATCTATGACTACTTATGGAACACGAGACCACCATTCTTGGACCAGGCTAGAAAGTTTGTCCCGGGAATGGTGCCATCAGATAATGTGGGCGTTTTGAAAACGATGTACGAGGATCACGAGGATCACGTAAATGTACGGCATGGAAAGCGGTACGGTGATGATCAATTTTTCATGATGAACACTTACGAGTACGAACCCACGGTGCCGGGCTTCAGTCTCGCCAAGGGCGACTGTTTTGCTTCCATTCTGAACTCCTCCGAAGGAGCTACCTATCCACAAAACTTGGACGAACAATCGGTGCTGATCTACTGGCGCAAGACACTCTGCAGGGCAGTGCCACTGTACTTTGAGCGACGAGTGCAGAAAGGTCCACTAACGGGGTATAAGTACGTGCTACCCCGATAATTCGTACGATCGTCTGCCCGACAGTGACGCTGA] [+] EMBL BM601682 [CCGCGGACGCGTGGGCGGACGCGTGGGGCGTTCCTGCAGCAAACATCTTATCGCGGCCCGGGTTATTTCATTGCTTGGTGTAGCCGCGAGGATGGAAAACGACAACTTCTTCATGAAGCGAGGATTCAATTTCATTTACTCCATGTCTGGGGATACTGTATTCAGCCGCATGACAATCTATGACTACTTATGGAACACGAGACCACCATTCTTGGACCAGGCTAGAAAGTTTGTCCCGGGAATGGTGCCATCAGATAATGTGGGCGTTTTGAAAACGATGTACGAGGATCACGAGGATCACGTAAATGTACGGCATGGAAAGCGGTACGGTGATGATCAATTTTTCATGATGAACACTTACGAGTACGAACCCACGGTGCCGGGCTTCAGTCTCGCCAAGGGCGACTGTTTTGCTTCCATTCTGAACTCCTCCGAAGGAGCTACCTATCCACAAAACTTGGACGAACAATCGGTGCTGATCTACTGGCGCAAGACACTCTGCAGGGCAGTGCCACTGTACTTTGAGCGACGAGTGCAGAAAGGTCCACTAACGGGGTATAAGTACGTGCTACCCCGATAATTCGTACGATCGTCTGCCCGACAGTGACGCTGA] consensusID : consensus_6563#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 460 fasta sequence [GCAGAATCCGCACGAGTGCGAATATTCATCTTCAATGTAACCAACTCCGAACGTTGGTTGGGTGGGCTAGACGATCAGCTTAAAATGCAAGAAGTGGTTCCAATCGTGTACCGTGAAATACTGGAACACGACAACGTTACCTTCCACGAGCACAACTCTACCATGTCGTACGTCACCAGAAGGCGTCTAGTGTTTTTACCCGATCGTAATGTTTCCCAGGCATACTTAATAAAGACCATCATCGTGCCCAAGACCAATTTCATTGCGTTGGTGTAAGCCGGCGGAGGATGGAAAAACGACCAAACTTCTTTCATGAAGCGAAGGATTCAAGTTGTCATTTACTCCATGTCTGGGGATACTGTATTCNAGCCGCATGACAATCTATGACTAGCTTATGGAACACGAGGACCAGCCGAGTNTGCTTGGGACCCAGGGCTAGGCAACGAGGTTCGACGGTCAC] [+] EMBL BX468797 [GCAGAATCCGCACGAGTGCGAATATTCATCTTCAATGTAACCAACTCCGAACGTTGGTTGGGTGGGCTAGACGATCAGCTTAAAATGCAAGAAGTGGTTCCAATCGTGTACCGTGAAATACTGGAACACGACAACGTTACCTTCCACGAGCACAACTCTACCATGTCGTACGTCACCAGAAGGCGTCTAGTGTTTTTACCCGATCGTAATGTTTCCCAGGCATACTTAATAAAGACCATCATCGTGCCCAAGACCAATTTCATTGCGTTGGTGTAAGCCGGCGGAGGATGGAAAAACGACCAAACTTCTTTCATGAAGCGAAGGATTCAAGTTGTCATTTACTCCATGTCTGGGGATACTGTATTCNAGCCGCATGACAATCTATGACTAGCTTATGGAACACGAGGACCAGCCGAGTNTGCTTGGGACCCAGGGCTAGGCAACGAGGTTCGACGGTCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6563#0 ------------------------------------------------------------ consensus_6563#3 ------------------------------------------------------------ consensus_6563#1 ------------------------------------------------------------ consensus_6563#2 CCGCGGACGCGTGGGCGGACGCGTGGGGCGTTCCTGCAGCAAACATCTTATCGCGGCCCG 60 consensus_6563#0 ------------------------------------------------------------ consensus_6563#3 -----------------------------------------GCAGAATCCGCACGAGTGC 19 consensus_6563#1 -----------------------------------CGACCCACG-CGTCCGCATGAA-GC 23 consensus_6563#2 GGTTATTTCATTGCTTGGTGTAGCCGCGAGGATGGAAAACGACAACTTCTTCATGAA-GC 119 consensus_6563#0 ------------------TAACCAACTCCGA--ACGTTGGTTGGGTGGGCTAGACGATC- 39 consensus_6563#3 GAATATTCATCTTCAATGTAACCAACTCCGA--ACGTTGGTTGGGTGGGCTAGACGATC- 76 consensus_6563#1 GAGGATTCAATTTCATTTACTCCATGTCTGGGGATACTGTATTCAGCCGCATGACAATCT 83 consensus_6563#2 GAGGATTCAATTTCATTTACTCCATGTCTGGGGATACTGTATTCAGCCGCATGACAATCT 179 *** ** * * ** * ** *** *** consensus_6563#0 --AGCTTAAAATGCAAGAAGTGGTT-CCAATCGTGTACCGTG--AAATACTGGAACACGA 94 consensus_6563#3 --AGCTTAAAATGCAAGAAGTGGTT-CCAATCGTGTACCGTG--AAATACTGGAACACGA 131 consensus_6563#1 ATGACTACTTATGGAACACGAGACCACCATTCTTGGACCAGGCTAGAAAGTTTGTCCCGG 143 consensus_6563#2 ATGACTACTTATGGAACACGAGACCACCATTCTTGGACCAGGCTAGAAAGTTTGTCCCGG 239 ** *** ** * * * *** ** ** *** * * * * * * ** consensus_6563#0 CAACGTTACCTTCC----ACGAGCACAACTCTACCATGTCGTACGTCACCAGAAGGCGTC 150 consensus_6563#3 CAACGTTACCTTCC----ACGAGCACAACTCTACCATGTCGTACGTCACCAGAAGGCGTC 187 consensus_6563#1 GAATGGTGCCATCAGATAATGTGGGCGTTTTGAAAACGATGTACGAGGATCACGAGGATC 203 consensus_6563#2 GAATGGTGCCATCAGATAATGTGGGCGTTTTGAAAACGATGTACGAGGATCACGAGGATC 299 ** * * ** ** * * * * * * * * ***** * ** consensus_6563#0 TAGTGTTTTTACCCGATCGTAATGTT--CCAGGCATACTTAATAAA--ACCATCATCGTG 206 consensus_6563#3 TAGTGTTTTTACCCGATCGTAATGTTTCCCAGGCATACTTAATAAAG-ACCATCATCGTG 246 consensus_6563#1 ACGTAAATGTACGGCATGG-AAAGCGGTACGGTGATGATCAATTTTTCATGATGAACACT 262 consensus_6563#2 ACGTAAATGTACGGCATGG-AAAGCGGTACGGTGATGATCAATTTTTCATGATGAACACT 358 ** * *** ** * ** * * * ** * *** * ** * * consensus_6563#0 CCAAACA----TTTCATTGC-TTGG--TGTA-GCCGC--GAGGATGGAAAA-CGAC--AA 253 consensus_6563#3 CCCAAGACCAATTTCATTGCGTTGG--TGTAAGCCGGCGGAGGATGGAAAAACGACCAAA 304 consensus_6563#1 TACGAGTACGAACCCACGGTGCCGGGCTTCAGTCTCGCCAAGGGCGACTGTTTTGCTTCC 322 consensus_6563#2 TACGAGTACGAACCCACGGTGCCGGGCTTCAGTCTCGCCAAGGGCGACTGTTTTGCTTCC 418 * ** * ** * * * *** * * consensus_6563#0 CTTCTT-CATGAAGCGA-GGATTCAATTT--CATTTACTCCATGT---CTGGGGATACTG 306 consensus_6563#3 CTTCTTTCATGAAGCGAAGGATTCAAGTTGTCATTTACTCCATGT---CTGGGGATACTG 361 consensus_6563#1 ATTCTGAACTCCTCCGAAGGAGCTACCTATCCACAAAACTTGGACGAACAATCGGTGCTG 382 consensus_6563#2 ATTCTGAACTCCTCCGAAGGAGCTACCTATCCACAAAACTTGGACGAACAATCGGTGCTG 478 **** * *** *** * * ** * * * * *** consensus_6563#0 TATTCA-GCCGCATGACAATCTAT--GACTA-CTTATGGAACACGAGACCACCATTCTTG 362 consensus_6563#3 TATTCNAGCCGCATGACAATCTAT--GACTAGCTTATGGAACACGAGG--ACCAGCC--- 414 consensus_6563#1 ATCTACTGGCGCAAGACACTCTGCAGGGCAGTGCCACTGTACTTTGAGCGACGAGTGCAG 442 consensus_6563#2 ATCTACTGGCGCAAGACACTCTGCAGGGCAGTGCCACTGTACTTTGAGCGACGAGTGCAG 538 * * **** **** *** * * * * ** ** * consensus_6563#0 GA--CCAGGCTAG-AAAGTTTGTCCCGGGAATGGTGCCATCAGATAAT-GTGGGCGTTTT 418 consensus_6563#3 GA--GTNTGCTTG-GGA------CCCAGGGCTAG-GCAACGAGGTTCG-ACGGTCAC--- 460 consensus_6563#1 AAAGGTCCACTAACGGGGTATAAGTACGTGCTACCC-GATAA--TTCGTACGATCGTCTG 499 consensus_6563#2 AAAGGTCCACTAACGGGGTATAAGTACGTGCTACCCCGATAA--TTCGTACGATCGTCTG 596 * ** * * * * * * * consensus_6563#0 GAAAACGATGTACGAGGATCACGAGGATCACGTAAATGTACGGCATGGAAAGCGGTACGG 478 consensus_6563#3 ------------------------------------------------------------ consensus_6563#1 CCAGACAGTGACGCTGACTGCTACAAAGGCCAGTTCGGATTACTTGAGGATGGAATGACG 559 consensus_6563#2 CCCGACAGTGACGCTGA------------------------------------------- 613 consensus_6563#0 CGATGATCAATTTTTCATGATGAACACTTACGAGTACGAACCCACGGTGCCGGGCTTCAG 538 consensus_6563#3 ------------------------------------------------------------ consensus_6563#1 GACACCTCCAATGTTCCCCATGATGTTCCAATCGTAGCTACAAGTCCACACTTTTATGCA 619 consensus_6563#2 ------------------------------------------------------------ consensus_6563#0 TCTCGCCAAGGGCGACTGTTTTGCTTCCATTCTGAACTCCTCCGAAGGAGCTACCTATCC 598 consensus_6563#3 ------------------------------------------------------------ consensus_6563#1 CGCAACTTCTCCAACGCCCATAAGATT--------------------------------- 646 consensus_6563#2 ------------------------------------------------------------ consensus_6563#0 ACAAAACTTGGACGAACAATCGGTGCTGATCTACTGGCGCAAGACACTCTGCAGGGCAGT 658 consensus_6563#3 ------------------------------------------------------------ consensus_6563#1 ------------------------------------------------------------ consensus_6563#2 ------------------------------------------------------------ consensus_6563#0 GCCACTGTACTTTGAGCGAC 678 consensus_6563#3 -------------------- consensus_6563#1 -------------------- consensus_6563#2 -------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||