cluster # 6564

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Anopheles gambiae
cluster # 6564 cluster # 6564 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6564#0 length = 690 sequences # 2

consensus_6564#1 length = 668 sequences # 2
consensus_6564#2 length = 467 sequences # 1

consensusID : consensus_6564#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 690
fasta sequence

                              [CGGCTACCCGGTGGTCGTTTCGAAGGAGAATCAATACTTGGTTGGCTTCGTGCTGCGAAGGGATCTAAATCTAGCCTTAGCTAATGCGCGACGCATCATTGACGGCATCACTGGCCAGTCGCTGGTAATCTTCACCTCGGCCCAACCGGTCCAAAACCTTGGCCCGTCGCCGCTGAAGCTGAAGAAAATCCTTGACATGGCCCCGATCACCGTAACGGACCAGACGCCGATGGAAACGGTCGTCGATATGTTCCGCAAGCTGGGCCTAAGGCAAACGCTGGTCACTCACAATGGGCGATTGCTCGGTGTAATAACCAAAAAGGACGTCCTGAGGCACGTGAAACAGATGGACAATGAAGACCCGAATACTGTTTTGTTTAACTAAGCTCTAACTAGCTATTTATAATGATATACAGTAGATATATGCGCAGGCCTTCATCCCTGGTCTTTCTCCCCTCCCTGCCATCTCCTCCTTCCCATGTGCTGCCACCCTCTTATCGTCGCAACCCCCCGATTGCCATCCAGGTGCTGGTTGGGAGCATAATTTAGCAAACAAACCTCCAGGCAAACGTTAGAGAAGCTCCCTCTTCCTCCCTATCCCCAAAACGTGCTAGAATTCCGTGGCTATCGTTATCTGTTGGCACTAGAAAGATATGATAGCAAAAAGATATGTTTTGTTGGTGTAGGAAG]

[+] EMBL BX625175             [CGGCTACCCGGTGGTCGTTTCGAAGGAGAATCAATACTTGGTTGGCTTCGTGCTGCGAAGGGATCTAAATCTAGCCTTAGCTAATGCGCGACGCATCATTGACGGCATCACTGGCCAGTCGCTGGTAATCTTCACCTCGGCCCAACCGGTCCAAAACCTTGGCCCGTCGCCGCTGAAGCTGAAGAAAATCCTTGACATGGCCCCGATCACCGTAACGGACCAGACGCCGATGGAAACGGTCGTCGATATGTTCCGCAAGCTGGGCCTAAGGCAAACGCTGGTCACTCACAATGGGCGATTGCTCGGTGTAATAACCAAAAAGGACGTCCTGAGGCACGTGAAACAGATGGACAATGAAGACCCGAATACTGTTTTGTTTAACTAAGCTCTAACTAGCTATTTATAATGATATACAGTAGATATATGCGCAGGCCTTCATCCCTGGTCTTTCTCCCCTCCCTGCCATCTCCTCCTTCCCATGTGCTGCCACCCTCTTATCGTCGCAACCCCCCGATTGCCATCCAGGTGCTGGTTGGGAGCATAATTTAGCAAACAAACCTCCAGGCAAACGTTAGAGAAGCTCCCTCTTCCTCCCTATCCCCAAAACGTGCTAGAATTCCGTGGCTATCGTTATCTGTTGGCACTAGAAAGATATGATAGCAAAAAGATATGTTTTGTTGGTGTAGGAAG]
[+] EMBL BM582944             [                                                              ccgTAAACCTAGCCTTAGCTAATGCGCGACGCATCATTGACGGCATCACTGGCCAGTCGCTGGTAATCTTCACCTCGGCCCAACCGGTCCAAAACCTTGGCCCGTCGCCGCTGAAGCTGAAGAAAATCCTCGACATGGCCCCGATCACCGTAACGGACCAGACGCCGATGGAAACGGTCGTCGATATGTTCCGCAAGCTGGGCCTAAGGCAAACGCTGGTCACTCACAATGGGCGATTGCTCGGTGTAATAACCAAAAAGGACGTCCTGAGGCACGTGAAACAGATGGACAATGAAGACCCGAATACTGTTTTGTTTAACTAAGCTCTAACTAGCTATTTATAATGATATACAGTAGATATATGCGCAGGCCTTCATCCCTGGTCTTTCTCCCCTCCCTGCCATCTCCCTCTTCCCATGTGCTGCCACCCTCTTATCGTCGCAACCCCCCGAATGCCATCCAGGTGCTGGTTGGGAGCATAATTTAGCAAACAAACCTCCAGGCAAACGTTAGACAAGCTCCCTCTCCCTCTCTATCCCCAAAACGTGCTAGAATTCCGTGGCTACCGTTATCTATTGGCACTAGAAAGATATGATAGC                             ]




>consensus_6564#0
CGGCTACCCGGTGGTCGTTTCGAAGGAGAATCAATACTTGGTTGGCTTCGTGCTGCGAAG
GGATCTAAATCTAGCCTTAGCTAATGCGCGACGCATCATTGACGGCATCACTGGCCAGTC
GCTGGTAATCTTCACCTCGGCCCAACCGGTCCAAAACCTTGGCCCGTCGCCGCTGAAGCT
GAAGAAAATCCTTGACATGGCCCCGATCACCGTAACGGACCAGACGCCGATGGAAACGGT
CGTCGATATGTTCCGCAAGCTGGGCCTAAGGCAAACGCTGGTCACTCACAATGGGCGATT
GCTCGGTGTAATAACCAAAAAGGACGTCCTGAGGCACGTGAAACAGATGGACAATGAAGA
CCCGAATACTGTTTTGTTTAACTAAGCTCTAACTAGCTATTTATAATGATATACAGTAGA
TATATGCGCAGGCCTTCATCCCTGGTCTTTCTCCCCTCCCTGCCATCTCCTCCTTCCCAT
GTGCTGCCACCCTCTTATCGTCGCAACCCCCCGATTGCCATCCAGGTGCTGGTTGGGAGC
ATAATTTAGCAAACAAACCTCCAGGCAAACGTTAGAGAAGCTCCCTCTTCCTCCCTATCC
CCAAAACGTGCTAGAATTCCGTGGCTATCGTTATCTGTTGGCACTAGAAAGATATGATAG
CAAAAAGATATGTTTTGTTGGTGTAGGAAG

consensusID : consensus_6564#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 668
fasta sequence

                              [ATAGCAAAAAGATATGTTTTGTTGGTGTAGGAAGCAGATGGAGAAAAACATACACACACTAAAAACAGTGCAATAATATACAAGCCGGTCTTTTTTGATTATTTTTTTGTATGGTGGGAGTTTAAATCCTGCCAAATTTCCCGCACCCTCCCCCAACCACGGCAAGCAATAGTAGTGTCCATGCACCCAGCAATGACGATGGTATTAGAAGAACCCTGTGTTACGTTATGCTAGCATTTTTGGAAGTAACAAAAAAAAGTATCAATAATTT-GTATTATTCAGGCAAAATGATTCA-TTCTGTTCCG-TTGTGATCAAAAAAAGCAAGAGAAGCAGCAGTTGATAGACACGCTTCAGCGTATAGATAAATATCATGTTAGTAAAAAAAAACAATTAGGAGAGAAATATCAAGAGGCGTACCCGGGGGGGCGCCTTGTGTACGTAAACGGGGGTAAACAGTTTTACTCTCCTACATTCTCTCGTCCAGGACTTATGACAAAACAGTTATCATATATTTTTTACACAACCACACACACACCCAAACAAACACTCAAAACTGTGCAATCTAATCGAACCGATTGTGTAGCGTTGCTGGTAACCGTTCGTATGTATGTATGAAAGGAAGCAAAAACACGAGTAGACAAATTACATTTTGGCAAAGCAAGCATGAA]

[+] EMBL BX618886             [ATAGCAAAAAGATATGTTTTGTTGGTGTAGGAAGCAGATGGAGAAAAACATACACACACTAAAAACAGTGCAATAATATACAAGCCGGTCTTTTTTGATTATTTTTTTGTATGGTGGGAGTTTAAATCCTGCCAAATTTCCCGCACCCTCCCCCAACCACGGCAAGCAATAGTAGTGTCCATGCACCCAGCAATGACGATGGTATTAGAAGAACCCTGTGTTACGTTATGCTAGCATTTTTGGAAGTAACAAAAAAAAGTATCAATAATTT GTATTATTCAGGCAAAATGATTCA TTCTGTTCCG TTGTGATCAAAAAAAGCAAGAGAAGCAGCAGTTGATAGACACGCTTCAGCGTATAGATAAATATCATGTTAGTAAAAAAAAACAATTAGGAGAGAAATATCAAGAGGCGTACCCGGGGGGGCGCCTTGTGTACGTAAACGGGGGTAAACAGTTTTACTCTCCTACATTCTCTCGTCCAGGACTTATGACAAAACAGTTATCATATATTTTTTACACAACCACACACACACCCAAACAAACACTCAAAACTGTGCAATCTAATCGAACCGATTGTGTAGCGTTGCTGGTAACCGTTCGTATGTATGTATGAAAGGAAGCAAAAACACGAGTAGACAAATTACATTTTGGCAAAGCAAGCATGAA]
[+] EMBL BX615534             [                                                                                                                                                                                                      aaGGTATTAGAAGAACCCTGTGTTACGTTGTGCTAGCATTTTTGGAAGTAAC AAAAAAAGTATCAATAATTTGGAATTATTCAGGGAAAATGATTCATTTTTGTTCTGTTTGTGATCAAAAAAAGCAAGAGAAGCAGGAGTTGATAGACA                                                                                                                                                                                                                                                                                                                                  ]




>consensus_6564#1
ATAGCAAAAAGATATGTTTTGTTGGTGTAGGAAGCAGATGGAGAAAAACATACACACACT
AAAAACAGTGCAATAATATACAAGCCGGTCTTTTTTGATTATTTTTTTGTATGGTGGGAG
TTTAAATCCTGCCAAATTTCCCGCACCCTCCCCCAACCACGGCAAGCAATAGTAGTGTCC
ATGCACCCAGCAATGACGATGGTATTAGAAGAACCCTGTGTTACGTTATGCTAGCATTTT
TGGAAGTAACAAAAAAAAGTATCAATAATTTGTATTATTCAGGCAAAATGATTCATTCTG
TTCCGTTGTGATCAAAAAAAGCAAGAGAAGCAGCAGTTGATAGACACGCTTCAGCGTATA
GATAAATATCATGTTAGTAAAAAAAAACAATTAGGAGAGAAATATCAAGAGGCGTACCCG
GGGGGGCGCCTTGTGTACGTAAACGGGGGTAAACAGTTTTACTCTCCTACATTCTCTCGT
CCAGGACTTATGACAAAACAGTTATCATATATTTTTTACACAACCACACACACACCCAAA
CAAACACTCAAAACTGTGCAATCTAATCGAACCGATTGTGTAGCGTTGCTGGTAACCGTT
CGTATGTATGTATGAAAGGAAGCAAAAACACGAGTAGACAAATTACATTTTGGCAAAGCA
AGCATGAA

consensusID : consensus_6564#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 467
fasta sequence

                              [CGAGGCAAGAACTNCCGGCACTGATGGAATATACAAGCCGGTCTTTCTCTTGATTATTTTTTTGTATGGTGGGAGTTTAAATCCTGCCAAATTTCCCGCACCCTCCCCCAACCACGGCAAGCAATAGTAGTGTCCATGCACCCAGCAATGACGATGGTATTAGAAGAACCCTGTGTTACGTTGTGCTAGCATTTTTGGAAGTAACAAAAAAAAGTATCAATAATTTGTATTATTCAGGCAAAATGATTCATTCTGTTCCGTTGTGATCAAGAGAAAAAGCAAGAGAAGCAGCAGTTGATAGACACGCTTCAGCGTATACGATAAGACTATCATGTTGAGTAAAGANAANAAACAATTAGGAGAGAAATATCAAGAGGCGTACCCGGGGCGGGCGCCTTGTGTACGTAAACGGGGGTAAACAGTTTTACTCGTCCTACATTCTCGTCGTCCAGGACTTATGACAAAAC]

[+] EMBL BX468299             [CGAGGCAAGAACTNCCGGCACTGATGGAATATACAAGCCGGTCTTTCTCTTGATTATTTTTTTGTATGGTGGGAGTTTAAATCCTGCCAAATTTCCCGCACCCTCCCCCAACCACGGCAAGCAATAGTAGTGTCCATGCACCCAGCAATGACGATGGTATTAGAAGAACCCTGTGTTACGTTGTGCTAGCATTTTTGGAAGTAACAAAAAAAAGTATCAATAATTTGTATTATTCAGGCAAAATGATTCATTCTGTTCCGTTGTGATCAAGAGAAAAAGCAAGAGAAGCAGCAGTTGATAGACACGCTTCAGCGTATACGATAAGACTATCATGTTGAGTAAAGANAANAAACAATTAGGAGAGAAATATCAAGAGGCGTACCCGGGGCGGGCGCCTTGTGTACGTAAACGGGGGTAAACAGTTTTACTCGTCCTACATTCTCGTCGTCCAGGACTTATGACAAAAC]




>consensus_6564#2
CGAGGCAAGAACTNCCGGCACTGATGGAATATACAAGCCGGTCTTTCTCTTGATTATTTT
TTTGTATGGTGGGAGTTTAAATCCTGCCAAATTTCCCGCACCCTCCCCCAACCACGGCAA
GCAATAGTAGTGTCCATGCACCCAGCAATGACGATGGTATTAGAAGAACCCTGTGTTACG
TTGTGCTAGCATTTTTGGAAGTAACAAAAAAAAGTATCAATAATTTGTATTATTCAGGCA
AAATGATTCATTCTGTTCCGTTGTGATCAAGAGAAAAAGCAAGAGAAGCAGCAGTTGATA
GACACGCTTCAGCGTATACGATAAGACTATCATGTTGAGTAAAGANAANAAACAATTAGG
AGAGAAATATCAAGAGGCGTACCCGGGGCGGGCGCCTTGTGTACGTAAACGGGGGTAAAC
AGTTTTACTCGTCCTACATTCTCGTCGTCCAGGACTTATGACAAAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6564#1      ---ATAGCAAAAAGATATGTTTTGTTGGTGTAGGAAGCAGATGGAGAAAAACATACACAC 57
consensus_6564#2      --------------------------------------------------CGAGGCAAGA 10
consensus_6564#0      CGGCTACCCGGTGGTCGTTTCGAAGGAGAATCAATACTTGGTTGGCTTCGTGCTGCGAAG 60
                                                                             *    

consensus_6564#1      A---CTAAAAACAGTGCAATAATATACAAGCCG-GTCTTTTT--TGATTATTTTTTTGTA 111
consensus_6564#2      A---CTNCCGGCACTGATGGAATATACAAGCCG-GTCTTTCTCTTGATTATTTTTTTGTA 66
consensus_6564#0      GGATCTAAATCTAGCCTTAGCTAATGCGCGACGCATCATTGACGGCATCACTGGCCAGT- 119
                          **      *          ** *  * **  ** **      ** * *     ** 

consensus_6564#1      TGGTGGGAGTTTAAATCCTG--CCAAATTTCCCGCACCCTCCCCCAACCACGGCAAGCAA 169
consensus_6564#2      TGGTGGGAGTTTAAATCCTG--CCAAATTTCCCGCACCCTCCCCCAACCACGGCAAGCAA 124
consensus_6564#0      CGCTGGTAATCTTCACCTCGGCCCAACCGGTCCAAAACCTTGGCCCGTCGCCGCTGAAGC 179
                       * *** * * *  * *  *  ****     **  * ***   **   * * **      

consensus_6564#1      TAGTAGTGTCCATGCACCCAGCAATGACGATGGTATTAGAAGAACCCTGTGTTACGTTAT 229
consensus_6564#2      TAGTAGTGTCCATGCACCCAGCAATGACGATGGTATTAGAAGAACCCTGTGTTACGTTGT 184
consensus_6564#0      TGAAGAAAATCCTTGACATGGCCCCGATCACCGTA----ACGGACCAGACGCCG----AT 231
                      *         * *  **   **   **  *  ***    * * ***    *        *

consensus_6564#1      GCTAGCATTTTTGGAAGTAA-CAAAAAAAAGTATCAATAATTTGTATTATTCAGGCAAAA 288
consensus_6564#2      GCTAGCATTTTTGGAAGTAA-CAAAAAAAAGTATCAATAATTTGTATTATTCAGGCAAAA 243
consensus_6564#0      GGAAACGGTCGTCGATATGTTCCGCAAGCTGGGCCTAAGGCAAACGCTGGTCACTCACAA 291
                      *  * *  *  * **  *   *   **   *   * *          *  ***  ** **

consensus_6564#1      TGATTCATTCTGTTCCGTTGTGATCAA---AAAAAGCAAGAGAAGCAGCAGTTGATAGAC 345
consensus_6564#2      TGATTCATTCTGTTCCGTTGTGATCAAGAGAAAAAGCAAGAGAAGCAGCAGTTGATAGAC 303
consensus_6564#0      TGGGCGATTGCTCGGTGTAATAACCAA-----AAAGGACGTCCTGAGGCACGTGAAACAG 346
                      **    ***       **  * * ***     **** * *    *  ***  *** * * 

consensus_6564#1      ACGCTTCAGCGTATA-GATAAA--TATCATGTT-AGTAAA-----AAAAAACAATTAGGA 396
consensus_6564#2      ACGCTTCAGCGTATACGATAAGACTATCATGTTGAGTAAAGAN--AANAAACAATTAGGA 361
consensus_6564#0      ATGGA-CAATGAAGACCCGAATACTGTTTTGTTTAACTAAGCTCTAACTAGCTATTTATA 405
                      * *   **  * * *    **   * *  **** *   **     **  * * ***   *

consensus_6564#1      GAGAAATATCA-AGAGGCGTACCCGGGG-GGGCGCCTTG-----TGTACGTAAACGGGGG 449
consensus_6564#2      GAGAAATATCA-AGAGGCGTACCCGGGGCGGGCGCCTTG-----TGTACGTAAACGGGGG 415
consensus_6564#0      ATGATATACAGTAGATATATGCGCAGGCCTTCATCCCTGGTCTTTCTCCCCTCCCTGCCA 465
                        ** ***    ***    * * * **       ** **     * * *     * *   

consensus_6564#1      TAAACAGTTTTACTC-TCCT---ACATTCTC-TCGTCCAGGACTTATGA---CAAAACAG 501
consensus_6564#2      TAAACAGTTTTACTCGTCCT---ACATTCTCGTCGTCCAGGACTTATGA---CAAAAC-- 467
consensus_6564#0      TCTCCTCCTTCCCATGTGCTGCCACCCTCTTATCGTCGCAACCCCCCGATTGCCATCCAG 525
                      *   *   **  *   * **   **  ***  *****     *    **   * *  *  

consensus_6564#1      TTA-TCATATATTTTTTACACAACCACACACACACCCAAACAAACACTCAAAACTGTGCA 560
consensus_6564#2      ------------------------------------------------------------
consensus_6564#0      GTGCTGGTTGGGAGCATAATTTAGCAAACAAACCTCCAGGCAAACGTTAGAGAAGCTCCC 585
                                                                                  

consensus_6564#1      ATCTAATCGAACCGATTGTGTAGCGTTGCTGGTAACCGTTCGTATGTATGTATGAAAGGA 620
consensus_6564#2      ------------------------------------------------------------
consensus_6564#0      TCTTCCTCCCTATCCCCAAAACGTGCTAGAATTCCGTGGCTATCGTTATCTGTTGGCACT 645
                                                                                  

consensus_6564#1      AGCAAAAACACGAGTAGACAAATTACATTTTGGCAAAGCAAGCATGAA 668
consensus_6564#2      ------------------------------------------------
consensus_6564#0      AGAAAGATATGATAGCAAAAAGATATGTTTTGTTGGTGTAGGAAG--- 690