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Anopheles gambiae
cluster # 6570 cluster # 6570       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6570#0 length = 1246 sequences # 4  
consensus_6570#1 length = 341 sequences # 1  

consensusID : consensus_6570#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1246
fasta sequence
                              [ATAGAGCGTGGTGTGGTAGTGGTAGTAGTAGTGGTAAAGCAAAATGATATATGTAGACGAGGAGGAGGCTTGTTACAGTTTCGTTCTGATCGTGTGTGCGCGTGTGTTCATAGAACGATTGTTTTATTAGCGTCATGGATCGCCATAACTGAAGTAGTGGGTAAGCGGAAGTACATACACACACACACCTGCGCGCGAAGCGAAGGAATCGTTATGCTAAGATTTAAAAAGCGGAACACGTGCTAAGGCCGTGTTTCGCGATGCCATTTACTGTAACGTATTTGCCAGATAGCGGGGCAGGCCGCGCGATACCATATAATAGCGAAACGCAAACACGCAAAAAAAACAAGAACAACACAAAAACCAACCAAATACAACCAAACAAAGGAATTGTTGATGAAATTTCATCGAACGGGTGGAGATAGCGTTTATTTCGTACGCAGCGCGCGCATAATCGATGCGCATTGTGCAGTGCGATGTATCTCATTTAGTGTAAAAGTAAAAGAAACATACAAAAGAAACTAGTGAAATACTTATAATAGTGTAAGAGTAGTGCAAACAACATAGGGAAAGAAACGGAGCGCACATGACGACT-------GTGGTGCAGAATGCGTTGTTGAAGATACAGAGAGCTCGCCATGCGCGGCTCGAAAATGTGTGGAGCGAACGGGTAGCAATGCCATTAGAATTATACAACAGATACAATGCATATTAGGTAAATGAAAACGCAACAACAAGACAAGAGCAAATATTATTATATTGAAATAAATATATCATATATACAAACACTCATACATACGAAGTGTCACCCTCGCCCTTCCTGATCCAGAACACACTAACAAAACCCAGCCCACCCTATTCCCATTCGTGAAGACAAAAAGAAAAAAAAAA-CAAGAAATATGCGAATTTGAAACAAGCAAATACAACCAAACGCACATACATCAGATGGCATTATACACATATACAAGAAATACGGTTACAGAGACACACAACACACAGACAGCCTGCAAACTGTAAACATTCCTAAAGGAAAACAGTCCGAGGGGACGTGCGTTTACAGCGTGGAAACATAAGTGAGACAACATAATAATAGAGCTGTAGCAGATAGTATTGATTGATAAACAATAATACCGATGCGGGGAGGATAGACAAGAAGTGTTATAAAACTATTACAACAGCAACAACAACAAAAATCCGTTAGAACACAAAGAACAAGACAAGTTCGTTATTATGATGGAATAAATGAGAA]

[+] EMBL BX608733             [ATAGAGCGTGGTGTGGTAGTGGTAGTAGTAGTGGTAAAGCAAAATGATATATGTAGACGAGGAGGAGGCTTGTTACAGTTTCGTTCTGATCGTGTGTGCGCGTGTGTTCATAGAACGATTGTTTTATTAGCGTCATGGATCGCCATAACTGAAGTAGTGGGTAAGCGGAAGTACATACACACACACACCTGCGCGCGAAGCGAAGGAATCGTTATGCTAAGATTTAAAAAGCGGAACACGTGCTAAGGCCGTGTTTCGCGATGCCATTTACTGTAACGTATTTGCCAGATAGCGGGGCAGGCCGCGCGATACCATATAATAGCGAAACGCAAACACGCAAAAAAAACAAGAACAACACAAAAACCAACCAAATACAACCAAACAAAGGAATTGTTGATGAAATTTCATCGAACGGGTGGAGATAGCGTTTATTTCGTACGCAGCGCGCGCATAATCGATGCGCATTGTGCAGTGCGATGTATCTCATTTAGTGTAAAAGTAAAAGAAACATACAAAAGAAACTAGTGAAATACTTATAATAGTGTAAGAGTAGTGCAAACAACATAGGGAAAGAAACGGAGCGCACATGACGACT       GTGGTGCAGAATGCGTTGTTGAAGATACAGAGAGCTCGCCATGCGCGGCTCGAAAATGTGTGGAGCGAACGGGTAGCAATGCCATTAGAATTATACAACAGATACAATGCATATTAGGTAAATGAAAACGCAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL BM594742             [                                                                                                                                                                                                                                                                                                                                                                                                                            ccGGTGGAGATAGCGTTTATTTCGTACGCAGCGCGCGAATAATCGATGCGCATTGTGCAGTGCGATGTATCTCATTTAGTGTAAAAGTAAAAGAAACATACAAAAGAAACTAGTGAAATACTTATAATAGTGTAAGAGTAGTGCAAACAACATAGGGAAAGAAACGGAGCGCACATGACGACTGTGGGGGGTGGTGCAGAATGCGTTGTTGAAGATACAGAGAGCTCGCCATGCGCGGTTCGAAAATGTGTGGAGCGAACGGGTAGCAATGCCATTAGAATTATACAACAGATACAATGCATATTAGGTAAATGAAAACGCAACAACAAGACAAGAGCAAATATTATTATATTGAAATAAATATATCATATATACAAACACTCATACATACGAAGTGTCACCCTCGCCCTTCCTGATCCAGAACACACTAACAAAACCCAGCCCACCCTATTCCCATTCGTGAAGACAAAAAGAAAAAAAAAACCAAGAAATATGCGAATTTGAAACAAGCAAATACAACCAAACGCACATACATCAGATGGCATTATACACATATACAAGAAATACGGTTACAGAGACACACAACACACAGACAGCCTGCAAACTGTAA                                                                                                                                                                                                                                        ]
[+] EMBL BM651219             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ccgAAGAAACGGAGCGCACATGACGACT       GTGGTGCAGAATGCGTTGTTGAAGATACAGAGAGCTCGCCATGCGCGGCTCGAAAATGTGTGGAGCGAACGGGTAGCAATGCCATTAGAATTATACAACAGATACAATGCATATTAGGTAAATGAAAACGCAACAACAAGACAAGAGCAAATATTATTATATTGAAATAAATATATCATATATACAAACACTCATACATACGAAGTGTCACCCTCGCCCTTCC                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BX610108             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CGACT       GTGGTGCAGAATGCGTTGTTGAAGATACAGAGAGCTCGCCATGCGCGGCTCGAAAATGTGTGGAGCGAACGGGTAGCAATGCCATTAGAATTATACAACAGATACAATGCATATTAGGTAAATGAAAACGCAACAACAAGACAAGAGCAAATATTATTATATTGAAATAAATATATCATATATACAAACACTCATACATACGAAGTGTCACCCTCGCCCTTCCTGATCCAGAACACACTAACAAAACCCAGCCCACCCTATTCCCATTCGTGAAGACAAAAAGAAAAAAAAAA TAAGAAATATGCGAATTTGAAACAAGCAAATACAACCAAACGCACATACATCAGATGGCATTATACACATATACAAGAAATACGGTTACAGAGACACACAACACACAGACAGCCTGCAAACTGTAAACATTCCTAAAGGAAAACAGTCCGAGGGGACGTGCGTTTACAGCGTGGAAACATAAGTGAGACAACATAATAATAGAGCTGTAGCAGATAGTATTGATTGATAAACAATAATACCGATGCGGGGAGGATAGACAAGAAGTGTTATAAAACTATTACAACAGCAACAACAACAAAAATCCGTTAGAACACAAAGAACAAGACAAGTTCGTTATTATGATGGAATAAATGAGAA]


>consensus_6570#0 ATAGAGCGTGGTGTGGTAGTGGTAGTAGTAGTGGTAAAGCAAAATGATATATGTAGACGA GGAGGAGGCTTGTTACAGTTTCGTTCTGATCGTGTGTGCGCGTGTGTTCATAGAACGATT GTTTTATTAGCGTCATGGATCGCCATAACTGAAGTAGTGGGTAAGCGGAAGTACATACAC ACACACACCTGCGCGCGAAGCGAAGGAATCGTTATGCTAAGATTTAAAAAGCGGAACACG TGCTAAGGCCGTGTTTCGCGATGCCATTTACTGTAACGTATTTGCCAGATAGCGGGGCAG GCCGCGCGATACCATATAATAGCGAAACGCAAACACGCAAAAAAAACAAGAACAACACAA AAACCAACCAAATACAACCAAACAAAGGAATTGTTGATGAAATTTCATCGAACGGGTGGA GATAGCGTTTATTTCGTACGCAGCGCGCGCATAATCGATGCGCATTGTGCAGTGCGATGT ATCTCATTTAGTGTAAAAGTAAAAGAAACATACAAAAGAAACTAGTGAAATACTTATAAT AGTGTAAGAGTAGTGCAAACAACATAGGGAAAGAAACGGAGCGCACATGACGACTGTGGT GCAGAATGCGTTGTTGAAGATACAGAGAGCTCGCCATGCGCGGCTCGAAAATGTGTGGAG CGAACGGGTAGCAATGCCATTAGAATTATACAACAGATACAATGCATATTAGGTAAATGA AAACGCAACAACAAGACAAGAGCAAATATTATTATATTGAAATAAATATATCATATATAC AAACACTCATACATACGAAGTGTCACCCTCGCCCTTCCTGATCCAGAACACACTAACAAA ACCCAGCCCACCCTATTCCCATTCGTGAAGACAAAAAGAAAAAAAAAACAAGAAATATGC GAATTTGAAACAAGCAAATACAACCAAACGCACATACATCAGATGGCATTATACACATAT ACAAGAAATACGGTTACAGAGACACACAACACACAGACAGCCTGCAAACTGTAAACATTC CTAAAGGAAAACAGTCCGAGGGGACGTGCGTTTACAGCGTGGAAACATAAGTGAGACAAC ATAATAATAGAGCTGTAGCAGATAGTATTGATTGATAAACAATAATACCGATGCGGGGAG GATAGACAAGAAGTGTTATAAAACTATTACAACAGCAACAACAACAAAAATCCGTTAGAA CACAAAGAACAAGACAAGTTCGTTATTATGATGGAATAAATGAGAA



consensusID : consensus_6570#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 341
fasta sequence
                              [CCGCCCACGCGTCCGACGAAGTGTCACCCTCGCCCTTCCTGATCCAGAACACACTAACAAAACCCAGCCCACCCTATTCCCATTCGTGAAGACAAAAAGAAAAAAAAAACCAAGAAATATGCGAATTTGAAACAAGCAAATACAACCAAACGCACATACATCAGATGGCATTATACACATATACAAGAAATACGGTTACAGAGACACACAACACACAGACAGCCTGCAAACTGTAAACATTCCTAAAGGAAAACAGTCCGAGGGGACGTGCGTTTACAGCGTGGAAACATAAGTGAGACAACATAATAATAGAGCTGTAGCAGATAGTATTGATTGATAAA]

[+] EMBL BM637862             [CCGCCCACGCGTCCGACGAAGTGTCACCCTCGCCCTTCCTGATCCAGAACACACTAACAAAACCCAGCCCACCCTATTCCCATTCGTGAAGACAAAAAGAAAAAAAAAACCAAGAAATATGCGAATTTGAAACAAGCAAATACAACCAAACGCACATACATCAGATGGCATTATACACATATACAAGAAATACGGTTACAGAGACACACAACACACAGACAGCCTGCAAACTGTAAACATTCCTAAAGGAAAACAGTCCGAGGGGACGTGCGTTTACAGCGTGGAAACATAAGTGAGACAACATAATAATAGAGCTGTAGCAGATAGTATTGATTGATAAA]


>consensus_6570#1 CCGCCCACGCGTCCGACGAAGTGTCACCCTCGCCCTTCCTGATCCAGAACACACTAACAA AACCCAGCCCACCCTATTCCCATTCGTGAAGACAAAAAGAAAAAAAAAACCAAGAAATAT GCGAATTTGAAACAAGCAAATACAACCAAACGCACATACATCAGATGGCATTATACACAT ATACAAGAAATACGGTTACAGAGACACACAACACACAGACAGCCTGCAAACTGTAAACAT TCCTAAAGGAAAACAGTCCGAGGGGACGTGCGTTTACAGCGTGGAAACATAAGTGAGACA ACATAATAATAGAGCTGTAGCAGATAGTATTGATTGATAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6570#0      ATAGAGCGTGGTGTGGTAGTGGTAGTAGTAGTGGTAAAGCAAAATGATATATGTAGACGA 60
consensus_6570#1      ------------------------------------------------------------
                                                                                  

consensus_6570#0      GGAGGAGGCTTGTTACAGTTTCGTTCTGATCGTGTGTGCGCGTGTGTTCATAGAACGATT 120
consensus_6570#1      ------------------------------------------------------------
                                                                                  

consensus_6570#0      GTTTTATTAGCGTCATGGATCGCCATAACTGAAGTAGTGGGTAAGCGGAAGTACATACAC 180
consensus_6570#1      ------------------------------------------------------------
                                                                                  

consensus_6570#0      ACACACACCTGCGCGCGAAGCGAAGGAATCGTTATGCTAAGATTTAAAAAGCGGAACACG 240
consensus_6570#1      ------------------------------------------------------------
                                                                                  

consensus_6570#0      TGCTAAGGCCGTGTTTCGCGATGCCATTTACTGTAACGTATTTGCCAGATAGCGGGGCAG 300
consensus_6570#1      ------------------------------------------------------------
                                                                                  

consensus_6570#0      GCCGCGCGATACCATATAATAGCGAAACGCAAACACGCAAAAAAAACAAGAACAACACAA 360
consensus_6570#1      ------------------------------------------------------------
                                                                                  

consensus_6570#0      AAACCAACCAAATACAACCAAACAAAGGAATTGTTGATGAAATTTCATCGAACGGGTGGA 420
consensus_6570#1      ------------------------------------------------------------
                                                                                  

consensus_6570#0      GATAGCGTTTATTTCGTACGCAGCGCGCGCATAATCGATGCGCATTGTGCAGTGCGATGT 480
consensus_6570#1      ------------------------------------------------------------
                                                                                  

consensus_6570#0      ATCTCATTTAGTGTAAAAGTAAAAGAAACATACAAAAGAAACTAGTGAAATACTTATAAT 540
consensus_6570#1      ------------------------------------------------------------
                                                                                  

consensus_6570#0      AGTGTAAGAGTAGTGCAAACAACATAGGGAAAGAAACGGAGCGCACATGACGACTGTGGT 600
consensus_6570#1      ------------------------------------------------------------
                                                                                  

consensus_6570#0      GCAGAATGCGTTGTTGAAGATACAGAGAGCTCGCCATGCGCGGCTCGAAAATGTGTGGAG 660
consensus_6570#1      ------------------------------------------------------------
                                                                                  

consensus_6570#0      CGAACGGGTAGCAATGCCATTAGAATTATACAACAGATACAATGCATATTAGGTAAATGA 720
consensus_6570#1      ------------------------------------------------------------
                                                                                  

consensus_6570#0      AAACGCAACAACAAGACAAGAGCAAATATTATTATATTGAAATAAATATATCATATATAC 780
consensus_6570#1      ----------------------------------------------------------CC 2
                                                                                 *

consensus_6570#0      AAACACTCATACATACGAAGTGTCACCCTCGCCCTTCCTGATCCAGAACACACTAACAAA 840
consensus_6570#1      GCCCACGCGTCCG-ACGAAGTGTCACCCTCGCCCTTCCTGATCCAGAACACACTAACAAA 61
                         *** * * *  **********************************************

consensus_6570#0      ACCCAGCCCACCCTATTCCCATTCGTGAAGACAAAAAGAAAAAAAAAAC-AAGAAATATG 899
consensus_6570#1      ACCCAGCCCACCCTATTCCCATTCGTGAAGACAAAAAGAAAAAAAAAACCAAGAAATATG 121
                      ************************************************* **********

consensus_6570#0      CGAATTTGAAACAAGCAAATACAACCAAACGCACATACATCAGATGGCATTATACACATA 959
consensus_6570#1      CGAATTTGAAACAAGCAAATACAACCAAACGCACATACATCAGATGGCATTATACACATA 181
                      ************************************************************

consensus_6570#0      TACAAGAAATACGGTTACAGAGACACACAACACACAGACAGCCTGCAAACTGTAAACATT 1019
consensus_6570#1      TACAAGAAATACGGTTACAGAGACACACAACACACAGACAGCCTGCAAACTGTAAACATT 241
                      ************************************************************

consensus_6570#0      CCTAAAGGAAAACAGTCCGAGGGGACGTGCGTTTACAGCGTGGAAACATAAGTGAGACAA 1079
consensus_6570#1      CCTAAAGGAAAACAGTCCGAGGGGACGTGCGTTTACAGCGTGGAAACATAAGTGAGACAA 301
                      ************************************************************

consensus_6570#0      CATAATAATAGAGCTGTAGCAGATAGTATTGATTGATAAACAATAATACCGATGCGGGGA 1139
consensus_6570#1      CATAATAATAGAGCTGTAGCAGATAGTATTGATTGATAAA-------------------- 341
                      ****************************************                    

consensus_6570#0      GGATAGACAAGAAGTGTTATAAAACTATTACAACAGCAACAACAACAAAAATCCGTTAGA 1199
consensus_6570#1      ------------------------------------------------------------
                                                                                  

consensus_6570#0      ACACAAAGAACAAGACAAGTTCGTTATTATGATGGAATAAATGAGAA 1246
consensus_6570#1      -----------------------------------------------
                                                                     




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)