These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6570#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1246 fasta sequence [ATAGAGCGTGGTGTGGTAGTGGTAGTAGTAGTGGTAAAGCAAAATGATATATGTAGACGAGGAGGAGGCTTGTTACAGTTTCGTTCTGATCGTGTGTGCGCGTGTGTTCATAGAACGATTGTTTTATTAGCGTCATGGATCGCCATAACTGAAGTAGTGGGTAAGCGGAAGTACATACACACACACACCTGCGCGCGAAGCGAAGGAATCGTTATGCTAAGATTTAAAAAGCGGAACACGTGCTAAGGCCGTGTTTCGCGATGCCATTTACTGTAACGTATTTGCCAGATAGCGGGGCAGGCCGCGCGATACCATATAATAGCGAAACGCAAACACGCAAAAAAAACAAGAACAACACAAAAACCAACCAAATACAACCAAACAAAGGAATTGTTGATGAAATTTCATCGAACGGGTGGAGATAGCGTTTATTTCGTACGCAGCGCGCGCATAATCGATGCGCATTGTGCAGTGCGATGTATCTCATTTAGTGTAAAAGTAAAAGAAACATACAAAAGAAACTAGTGAAATACTTATAATAGTGTAAGAGTAGTGCAAACAACATAGGGAAAGAAACGGAGCGCACATGACGACT-------GTGGTGCAGAATGCGTTGTTGAAGATACAGAGAGCTCGCCATGCGCGGCTCGAAAATGTGTGGAGCGAACGGGTAGCAATGCCATTAGAATTATACAACAGATACAATGCATATTAGGTAAATGAAAACGCAACAACAAGACAAGAGCAAATATTATTATATTGAAATAAATATATCATATATACAAACACTCATACATACGAAGTGTCACCCTCGCCCTTCCTGATCCAGAACACACTAACAAAACCCAGCCCACCCTATTCCCATTCGTGAAGACAAAAAGAAAAAAAAAA-CAAGAAATATGCGAATTTGAAACAAGCAAATACAACCAAACGCACATACATCAGATGGCATTATACACATATACAAGAAATACGGTTACAGAGACACACAACACACAGACAGCCTGCAAACTGTAAACATTCCTAAAGGAAAACAGTCCGAGGGGACGTGCGTTTACAGCGTGGAAACATAAGTGAGACAACATAATAATAGAGCTGTAGCAGATAGTATTGATTGATAAACAATAATACCGATGCGGGGAGGATAGACAAGAAGTGTTATAAAACTATTACAACAGCAACAACAACAAAAATCCGTTAGAACACAAAGAACAAGACAAGTTCGTTATTATGATGGAATAAATGAGAA] [+] EMBL BX608733 [ATAGAGCGTGGTGTGGTAGTGGTAGTAGTAGTGGTAAAGCAAAATGATATATGTAGACGAGGAGGAGGCTTGTTACAGTTTCGTTCTGATCGTGTGTGCGCGTGTGTTCATAGAACGATTGTTTTATTAGCGTCATGGATCGCCATAACTGAAGTAGTGGGTAAGCGGAAGTACATACACACACACACCTGCGCGCGAAGCGAAGGAATCGTTATGCTAAGATTTAAAAAGCGGAACACGTGCTAAGGCCGTGTTTCGCGATGCCATTTACTGTAACGTATTTGCCAGATAGCGGGGCAGGCCGCGCGATACCATATAATAGCGAAACGCAAACACGCAAAAAAAACAAGAACAACACAAAAACCAACCAAATACAACCAAACAAAGGAATTGTTGATGAAATTTCATCGAACGGGTGGAGATAGCGTTTATTTCGTACGCAGCGCGCGCATAATCGATGCGCATTGTGCAGTGCGATGTATCTCATTTAGTGTAAAAGTAAAAGAAACATACAAAAGAAACTAGTGAAATACTTATAATAGTGTAAGAGTAGTGCAAACAACATAGGGAAAGAAACGGAGCGCACATGACGACT GTGGTGCAGAATGCGTTGTTGAAGATACAGAGAGCTCGCCATGCGCGGCTCGAAAATGTGTGGAGCGAACGGGTAGCAATGCCATTAGAATTATACAACAGATACAATGCATATTAGGTAAATGAAAACGCAAC ] [+] EMBL BM594742 [ ccGGTGGAGATAGCGTTTATTTCGTACGCAGCGCGCGAATAATCGATGCGCATTGTGCAGTGCGATGTATCTCATTTAGTGTAAAAGTAAAAGAAACATACAAAAGAAACTAGTGAAATACTTATAATAGTGTAAGAGTAGTGCAAACAACATAGGGAAAGAAACGGAGCGCACATGACGACTGTGGGGGGTGGTGCAGAATGCGTTGTTGAAGATACAGAGAGCTCGCCATGCGCGGTTCGAAAATGTGTGGAGCGAACGGGTAGCAATGCCATTAGAATTATACAACAGATACAATGCATATTAGGTAAATGAAAACGCAACAACAAGACAAGAGCAAATATTATTATATTGAAATAAATATATCATATATACAAACACTCATACATACGAAGTGTCACCCTCGCCCTTCCTGATCCAGAACACACTAACAAAACCCAGCCCACCCTATTCCCATTCGTGAAGACAAAAAGAAAAAAAAAACCAAGAAATATGCGAATTTGAAACAAGCAAATACAACCAAACGCACATACATCAGATGGCATTATACACATATACAAGAAATACGGTTACAGAGACACACAACACACAGACAGCCTGCAAACTGTAA ] [+] EMBL BM651219 [ ccgAAGAAACGGAGCGCACATGACGACT GTGGTGCAGAATGCGTTGTTGAAGATACAGAGAGCTCGCCATGCGCGGCTCGAAAATGTGTGGAGCGAACGGGTAGCAATGCCATTAGAATTATACAACAGATACAATGCATATTAGGTAAATGAAAACGCAACAACAAGACAAGAGCAAATATTATTATATTGAAATAAATATATCATATATACAAACACTCATACATACGAAGTGTCACCCTCGCCCTTCC ] [+] EMBL BX610108 [ CGACT GTGGTGCAGAATGCGTTGTTGAAGATACAGAGAGCTCGCCATGCGCGGCTCGAAAATGTGTGGAGCGAACGGGTAGCAATGCCATTAGAATTATACAACAGATACAATGCATATTAGGTAAATGAAAACGCAACAACAAGACAAGAGCAAATATTATTATATTGAAATAAATATATCATATATACAAACACTCATACATACGAAGTGTCACCCTCGCCCTTCCTGATCCAGAACACACTAACAAAACCCAGCCCACCCTATTCCCATTCGTGAAGACAAAAAGAAAAAAAAAA TAAGAAATATGCGAATTTGAAACAAGCAAATACAACCAAACGCACATACATCAGATGGCATTATACACATATACAAGAAATACGGTTACAGAGACACACAACACACAGACAGCCTGCAAACTGTAAACATTCCTAAAGGAAAACAGTCCGAGGGGACGTGCGTTTACAGCGTGGAAACATAAGTGAGACAACATAATAATAGAGCTGTAGCAGATAGTATTGATTGATAAACAATAATACCGATGCGGGGAGGATAGACAAGAAGTGTTATAAAACTATTACAACAGCAACAACAACAAAAATCCGTTAGAACACAAAGAACAAGACAAGTTCGTTATTATGATGGAATAAATGAGAA] consensusID : consensus_6570#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 341 fasta sequence [CCGCCCACGCGTCCGACGAAGTGTCACCCTCGCCCTTCCTGATCCAGAACACACTAACAAAACCCAGCCCACCCTATTCCCATTCGTGAAGACAAAAAGAAAAAAAAAACCAAGAAATATGCGAATTTGAAACAAGCAAATACAACCAAACGCACATACATCAGATGGCATTATACACATATACAAGAAATACGGTTACAGAGACACACAACACACAGACAGCCTGCAAACTGTAAACATTCCTAAAGGAAAACAGTCCGAGGGGACGTGCGTTTACAGCGTGGAAACATAAGTGAGACAACATAATAATAGAGCTGTAGCAGATAGTATTGATTGATAAA] [+] EMBL BM637862 [CCGCCCACGCGTCCGACGAAGTGTCACCCTCGCCCTTCCTGATCCAGAACACACTAACAAAACCCAGCCCACCCTATTCCCATTCGTGAAGACAAAAAGAAAAAAAAAACCAAGAAATATGCGAATTTGAAACAAGCAAATACAACCAAACGCACATACATCAGATGGCATTATACACATATACAAGAAATACGGTTACAGAGACACACAACACACAGACAGCCTGCAAACTGTAAACATTCCTAAAGGAAAACAGTCCGAGGGGACGTGCGTTTACAGCGTGGAAACATAAGTGAGACAACATAATAATAGAGCTGTAGCAGATAGTATTGATTGATAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6570#0 ATAGAGCGTGGTGTGGTAGTGGTAGTAGTAGTGGTAAAGCAAAATGATATATGTAGACGA 60 consensus_6570#1 ------------------------------------------------------------ consensus_6570#0 GGAGGAGGCTTGTTACAGTTTCGTTCTGATCGTGTGTGCGCGTGTGTTCATAGAACGATT 120 consensus_6570#1 ------------------------------------------------------------ consensus_6570#0 GTTTTATTAGCGTCATGGATCGCCATAACTGAAGTAGTGGGTAAGCGGAAGTACATACAC 180 consensus_6570#1 ------------------------------------------------------------ consensus_6570#0 ACACACACCTGCGCGCGAAGCGAAGGAATCGTTATGCTAAGATTTAAAAAGCGGAACACG 240 consensus_6570#1 ------------------------------------------------------------ consensus_6570#0 TGCTAAGGCCGTGTTTCGCGATGCCATTTACTGTAACGTATTTGCCAGATAGCGGGGCAG 300 consensus_6570#1 ------------------------------------------------------------ consensus_6570#0 GCCGCGCGATACCATATAATAGCGAAACGCAAACACGCAAAAAAAACAAGAACAACACAA 360 consensus_6570#1 ------------------------------------------------------------ consensus_6570#0 AAACCAACCAAATACAACCAAACAAAGGAATTGTTGATGAAATTTCATCGAACGGGTGGA 420 consensus_6570#1 ------------------------------------------------------------ consensus_6570#0 GATAGCGTTTATTTCGTACGCAGCGCGCGCATAATCGATGCGCATTGTGCAGTGCGATGT 480 consensus_6570#1 ------------------------------------------------------------ consensus_6570#0 ATCTCATTTAGTGTAAAAGTAAAAGAAACATACAAAAGAAACTAGTGAAATACTTATAAT 540 consensus_6570#1 ------------------------------------------------------------ consensus_6570#0 AGTGTAAGAGTAGTGCAAACAACATAGGGAAAGAAACGGAGCGCACATGACGACTGTGGT 600 consensus_6570#1 ------------------------------------------------------------ consensus_6570#0 GCAGAATGCGTTGTTGAAGATACAGAGAGCTCGCCATGCGCGGCTCGAAAATGTGTGGAG 660 consensus_6570#1 ------------------------------------------------------------ consensus_6570#0 CGAACGGGTAGCAATGCCATTAGAATTATACAACAGATACAATGCATATTAGGTAAATGA 720 consensus_6570#1 ------------------------------------------------------------ consensus_6570#0 AAACGCAACAACAAGACAAGAGCAAATATTATTATATTGAAATAAATATATCATATATAC 780 consensus_6570#1 ----------------------------------------------------------CC 2 * consensus_6570#0 AAACACTCATACATACGAAGTGTCACCCTCGCCCTTCCTGATCCAGAACACACTAACAAA 840 consensus_6570#1 GCCCACGCGTCCG-ACGAAGTGTCACCCTCGCCCTTCCTGATCCAGAACACACTAACAAA 61 *** * * * ********************************************** consensus_6570#0 ACCCAGCCCACCCTATTCCCATTCGTGAAGACAAAAAGAAAAAAAAAAC-AAGAAATATG 899 consensus_6570#1 ACCCAGCCCACCCTATTCCCATTCGTGAAGACAAAAAGAAAAAAAAAACCAAGAAATATG 121 ************************************************* ********** consensus_6570#0 CGAATTTGAAACAAGCAAATACAACCAAACGCACATACATCAGATGGCATTATACACATA 959 consensus_6570#1 CGAATTTGAAACAAGCAAATACAACCAAACGCACATACATCAGATGGCATTATACACATA 181 ************************************************************ consensus_6570#0 TACAAGAAATACGGTTACAGAGACACACAACACACAGACAGCCTGCAAACTGTAAACATT 1019 consensus_6570#1 TACAAGAAATACGGTTACAGAGACACACAACACACAGACAGCCTGCAAACTGTAAACATT 241 ************************************************************ consensus_6570#0 CCTAAAGGAAAACAGTCCGAGGGGACGTGCGTTTACAGCGTGGAAACATAAGTGAGACAA 1079 consensus_6570#1 CCTAAAGGAAAACAGTCCGAGGGGACGTGCGTTTACAGCGTGGAAACATAAGTGAGACAA 301 ************************************************************ consensus_6570#0 CATAATAATAGAGCTGTAGCAGATAGTATTGATTGATAAACAATAATACCGATGCGGGGA 1139 consensus_6570#1 CATAATAATAGAGCTGTAGCAGATAGTATTGATTGATAAA-------------------- 341 **************************************** consensus_6570#0 GGATAGACAAGAAGTGTTATAAAACTATTACAACAGCAACAACAACAAAAATCCGTTAGA 1199 consensus_6570#1 ------------------------------------------------------------ consensus_6570#0 ACACAAAGAACAAGACAAGTTCGTTATTATGATGGAATAAATGAGAA 1246 consensus_6570#1 ----------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||