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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6576#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1322 fasta sequence
[CCGCCCACGCGTCC-CGCGCGGGCTGCGGATGTGCCTTCCTACGTTGGTAATGTTAATTTATGGCCAAACATTTGCAATTTCCCCGGTTTAACATTCACATTCAGTATGTTTGAAAGTAAAAGAGGCCTTTAATTAGCTTTGTAAGTAATAAAACCGCGTA-CTTAAGTACTGCCACATCCGATTCGAAACGCTTCTAGAGAGTGTGGTTCTGGTGAAACATGCATTTATAATTCTTCCTGAACTGATCCGTTGCAATGCATCGCGATGGAGTTCCACGACGAGATCGTTATAGAACGCACCAAAATAATGGCCGTCAATGCGGACAATTCGTTCCAGTATGAGGAGGTACAAATCAAAGAAGAAATTGCATCTGATTCAGAGGAAATAGTACCGGTAATAAGCAACGGGAAGAAAGCAGGGGCACAACAACAAAGCAACAGCAAACATCACGTGCACGAAGAAGATATTCCGTGTGGCCTTTACCCATTGGAAGATAACAACAATAATGCAAAAGGCAGAGCTAAGCATCAATGCGAGAATTGCCTCGAATCGTTCGACAGTATCGTTCGCCTGCGTCGGCACGAGCGAAAGCA-TTGGATGAAAAGCTGCCCAATATGCGACAAGACGGTGCAGGTGGATAATTTAAAGTTTCACATCGGTCGTATGCACGGTAGCGA-TGAGC-GGTGTGCTGAAAAACGGCCCTTCCAGTGCACGGAATGCGATAAATCGTTCTTCCTCCCGAACCACCTGTTAGAGCATGGGCAGACGCACCAGAAGGCAAGCTGCCCGGTGTGTGGGGAATCGTTCAGACCGTCCTACCTCAAGAACCACATAGCTAGAAAGCATCCGGACGGTGACGCGAGACTTTCGAAAACCCCCACCGTGTACCGTTGCAGTGCATGCAAGCAAACGTTTGTCAGTAAATCCTTGCTCTGGACTCACCAGCAGATGCATAAGAAGGTGGAGTGTACTATATGCAACAAAACGTTCCGGCAGGATGGTATGAAAATGCACATGGCCACCACCCATCGGGAGTATCTGTCG-CTTCGGAGACTCCATCGTACAAGTGTGATAAATGCGAACGGACATTCCTGTACAAAAAGCAGCTGACGAAGCACCAACGCTACCACCCCCGGATGATAAAGTGTGCGATTTGTGAACGGTCGTTTAAAACGAACCACTTCAAAATCCACACAGCAGAGGAACATGGTGCACCGGAGTAATGTGTGATTGTAAAACTCTATCGAAGCAAAAGTAGTAAAGAATTTTGAATTTTGAATCTAAAAAAAAAAAAAAAAAAGGCCACATGTGCTCGAGTTGGG]
[+] EMBL BM594808 [CCGCCCACGCGTCCGCGCGCGGGCTGCGGATGTGCCTTCCTACGTTGGTAATGTTAATTTATGGCCAAACATTTGCAATTTCCCCGGTTTAACATTCACATTCAGTATGTTTGAAAGTAAAAGAGGCCTTTAATTAGCTTTGTAAGTAATAAAACCGCGTAGCTTAAGTACTGCCACATCCGATTCGAAACGCTTCTAGAGAGTGTGGTTCTGGTGAAACATGCATTTATAATTCTTCCTGAACTGATCCGTTGCAATGCATCGCGATGGAGTTCCACGACGAGATCGTTATAGAACGCACCAAAATAATGGCCGTCAATGCGGACAATTCGTTCCAGTATGAGGAGGTACAAATCAAAGAAGAAATTGCATCTGATTCAGAGGAAATAGTACCGGTAATAAGCAACGGGAAGAAAGCAGGGGCACAACAACAAAGCAACAGCAAACATCACGTGCACGAAGAAGATATTCCGTGTGGCCTTTACCCATTGGAAGATAACAACAATAATGCAAAAGGCAGGGCTAAGCATCAATGCGAGAATTGTCTCGAATCGTTCGACAGTATCGTTCGCCTGCGTCGGCACGAGCGAAAGCA TTGGATGAAAAGCTGCCCAATATGCGACAAGACGGTGCAGGTGGATAATTTAAAGTTTCACATCGGTCGTATGCACGGTAACGATTGAGC GGTGTGCTGAACAACGGCCCTT ]
[+] EMBL CNS09N7Y [ tCGTGC CGCGCGGGCTGCGGATGTGCCTTCCTACGTTGGTAATGTTAATTTATGGCCAAACATTTGCAATTTCCCCGGTTTAACATTCACATTCAGTATGTTTGAAAGTAAAAGAGGCCTTTAATTAGCTTTGTAAGTAATAAAACCGCGTA CTTAAGCACTGCCACATCCGATTCGAAACGCTTCTAGAGAGTGTGGTTCTGGTGAAACATGCATTTATAATTCTTCCTGAACTGATCCGTTGCAATGCATCGCGATGGAGTTCCACGACGAGATCGTTATAGGACGCACCAAAATAATGGCCGTCAATGCGGAAAATTCGTTCCAGTATGAGGAGGTACAAATCAAAGAAGAAATTGCATCTGATTCAGAGGAAATAGTACCGGTAATAAGCAACGGGAAGAAAGCAGGGGCACAACAACAAAGCAACAGCAAACATCACGTGCACGAAGAAGATATTCCGTGTGGCCTTTACCCATTGGAAGATAACAACAATAATGCAAAAGGCAGAGCTAAGCATCAATGCGAGAATTGCCTCGAATCGTTCGACAGTATCGTACGCCTGCGTCGGCACGAGCGAAAGCATTTGGATGAAAAGCTGCCCAATATGCGACAAGACGGTGCAGGTGGATAATTTAAAGTTTCACATCGGTCGTATGCACGGTAGCGA TGAGC GGTGTGCTGAAAAACGGTCCTTCCAGTGCACGGAATGCGATAAATCGTTCTTCCTCCCGAACCACCTGTTAGAGCATGGGCAGACGCACCAGAAGGCAAGCTGCCCGGTGTGTGGGGAATCGTTCAGACCGTCCTACCTCAAGAACCACATAGCTAGAAAGCATCCGGACGGTGACGCGAGACTTTCGAAAA CCCCACCGTGTACCGTTGCAGTGCATGCAAGCAAAC ]
[-] EMBL CNS09N7Z [ GCAACGGGAAGAAAGCAGGGGCACAACAACAAAGCAACAGCAAACATCACGTGCACGAAGAAGATATTCCGTGTGGCCTTTACCCATTGGAAGATAACAACAATAATGCAAAAGGCAGAGCTAAGCATCAATGCGAGAATTGCCTCGAATCGTTCGACAGTATCGTACGCCTGCGTCGGCACGAGCGAAAGCA TTGGATGAAAAGCTGCCCAATATGCGACAAGACGGTGCAGGTGGATAATTTAAAGTTTCACATCGGTCGTATGCACGGTAGCGA TGAGC GGTGTGCTGAAAAACGGTCCTTCCAGTGCACGGAATGCGATAAATCGTTCTTCCTCCCGAACCACCTGTTAGAGCATGGGCAGACGCACCAGAAGGCAAGCTGCCCGGTGTGTGGGGAATCGTTCAGACCGTCCTACCTCAAGAACCACATAGCTAGAAAGCATCCGGACGGTGACGCGAGACTTTCGAAAACCCCCACCGTGTACCGTTGCAGTGCATGCAAGCAAACGTTTGTCAGTAAATCCTTGCTCTGGACTCACCAGCAGATGCATAAGAAGGTGGAGTGTACTATATGCAACAAAACGTTCCGGCAGGATGGTATGAAAATGCACATGGCCACCACCCATCGGGAGTATCTGTCG CTTCGGAGACTCCATCGTACAAGTGTGATAAATGCGAACGGACATTCCTGTACAAAAAGCAGCTGACGAAGCACCAACGCTACCACCCCCGGATGATAAAGTGTGCGATTTGTGAACGGTCGTTTAAAACGAACCACTTCAAAATCCACACAGCAGAGGAACATGGTGCACCGGAGTAATGTGTGATTGTAAAACTCTATCGAAGCAAAAGTAGTAAA ]
[+] EMBL CNS08JOC [ AGTATCGTTCGCCTGCGTCGGCACGAGCGAAA CA TTGGATGAAAAGCTGCCCAATATGCGACAAGACGGTGCAGGTGGATAATTTAAAGTTTCACATCGGTCGTATGCACGGTAGCGA TGAGCGGGTGTGCTGAAAAACGGCCCTTCCAGTGCACGGAATGCGATAAATCGTTCTTCCTCCCGAACCACCTGTTAGAGCATGGGCAGACGCACCGGAAGGCAAGCTGCCCGGTGTGTGGGGAATCGTTCAGACCGTCCTACCTCAAGAACCACATAGCTAGAAAGCATCCGGACGGTGACGCGGGACTTTCGAAAACCCCCACCGTGTACCGTTGCAGTGCATGCAAGCAAACATTTGTCAGTAAATCCTTGCTCTGGACTCACCAGCAGATGCATAAGAAGGTGGAGTGTACTATATGCAACAAAACGTTCCGGCAGGATGGTATGAAAATGCACATGGCCACCACCCATCGGGAGTATCTGTCGCCTTCGGAGACTCCATCGTACAAGTGTGATAAATGCGAACGGACATTCCTGTACAAAAAGCAGCTGACGAAGCACCAACGCTACCACCCCCGGATGGTAAAGTGTGCGATTTGTGAACGGTCGTTTAAAACGAACCACTTCAAAATCCACACAGCAGAGGAACATGGTGCACCGGAGTAATGTGTGATTGTAAAACTCTATCGAAGCAAAAGTAGTAAAGAATTTTGAATTTTGAATCTAAAAAAAAAAAAAAAAAAGGCCACATGTGCTCGAGTTGGG]
consensusID : consensus_6576#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 796 fasta sequence
[TTCCTCGAGAACTGTTGGCCCACTGGAATAATGCAGGCAGGCAGGGCAGTGCTAAGCATCAATGCGAGAATTGCCTCGAATCGTTCGACAGTATCGTTCGCCTGCGTCGGCACGAGCGAAAGCATTGGATGAAAAGCTGCCCAATATGCGACAAGACGGTGCAGGTGGATAATTTAAAGTTTCACATCGGTCGTATGCACGGTAGCGATGAGCGGTGTGCTGAAAAACGGCCCTTCCAGTGCACGGAATGCGATAAATCGTTCTTCCTCCCGAACCACCTGTTAGAGCATGGGCAGACGCACCGGAAGGCAAGCTGCCCGGTGTGTGGGGAATCGTTCAGACCGTCCTACCTCAAGAACCACATAGCTAGAAAGCATCCGGACGGTGACGCGGGACTTTCGAAAACCCCCACCGTGTACCGTTGCAGTGCATGCAAGCAAACATTTGTCAGTAAATCCTTGCTCTGGACTCACCAGCAGATGCATAAGAAGGTGGAGTGTACTATATGCAACAAAACGTTCCGGCAGGATGGTATGAAAATGCACATGGCCACCACCCATCGGGAGTTTTTGTCGCTTCGGAAACTCCATCGTACAAGTGTGATAAATGCGAACGGACATTCCTGTACAAAAAGCAGCTGACGAAGCACCAACGCTACCACCCCCGGATGGTAAAGTGTGCGATTTGTGAACGGTCGTTTAAAACGAACCACTTCAAAATCCACACAGCAGAGGAACATGGTGCACCGGAGTAATGTGTGATTGTAAAACTCTATCGAAGCAAAAGTAGTAAAGAA]
[-] EMBL CNS08JOD [TTCCTCGAGAACTGTTGGCCCACTGGAATAATGCAGGCAGGCAGGGCAGTGCTAAGCATCAATGCGAGAATTGCCTCGAATCGTTCGACAGTATCGTTCGCCTGCGTCGGCACGAGCGAAAGCATTGGATGAAAAGCTGCCCAATATGCGACAAGACGGTGCAGGTGGATAATTTAAAGTTTCACATCGGTCGTATGCACGGTAGCGATGAGCGGTGTGCTGAAAAACGGCCCTTCCAGTGCACGGAATGCGATAAATCGTTCTTCCTCCCGAACCACCTGTTAGAGCATGGGCAGACGCACCGGAAGGCAAGCTGCCCGGTGTGTGGGGAATCGTTCAGACCGTCCTACCTCAAGAACCACATAGCTAGAAAGCATCCGGACGGTGACGCGGGACTTTCGAAAACCCCCACCGTGTACCGTTGCAGTGCATGCAAGCAAACATTTGTCAGTAAATCCTTGCTCTGGACTCACCAGCAGATGCATAAGAAGGTGGAGTGTACTATATGCAACAAAACGTTCCGGCAGGATGGTATGAAAATGCACATGGCCACCACCCATCGGGAGTTTTTGTCGCTTCGGAAACTCCATCGTACAAGTGTGATAAATGCGAACGGACATTCCTGTACAAAAAGCAGCTGACGAAGCACCAACGCTACCACCCCCGGATGGTAAAGTGTGCGATTTGTGAACGGTCGTTTAAAACGAACCACTTCAAAATCCACACAGCAGAGGAACATGGTGCACCGGAGTAATGTGTGATTGTAAAACTCTATCGAAGCAAAAGTAGTAAAGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6576#0 CCGCCCACGCGTCCCGCGCGGGCTGCGGATGTGCCTTCCTACGTTGGTAATGTTAATTTA 60
consensus_6576#1 ------------------------------------------------------------
consensus_6576#0 TGGCCAAACATTTGCAATTTCCCCGGTTTAACATTCACATTCAGTATGTTTGAAAGTAAA 120
consensus_6576#1 ------------------------------------------------------------
consensus_6576#0 AGAGGCCTTTAATTAGCTTTGTAAGTAATAAAACCGCGTACTTAAGTACTGCCACATCCG 180
consensus_6576#1 ------------------------------------------------------------
consensus_6576#0 ATTCGAAACGCTTCTAGAGAGTGTGGTTCTGGTGAAACATGCATTTATAATTCTTCCTGA 240
consensus_6576#1 ------------------------------------------------------------
consensus_6576#0 ACTGATCCGTTGCAATGCATCGCGATGGAGTTCCACGACGAGATCGTTATAGAACGCACC 300
consensus_6576#1 ------------------------------------------------------------
consensus_6576#0 AAAATAATGGCCGTCAATGCGGACAATTCGTTCCAGTATGAGGAGGTACAAATCAAAGAA 360
consensus_6576#1 ------------------------------------------------------------
consensus_6576#0 GAAATTGCATCTGATTCAGAGGAAATAGTACCGGTAATAAGCAACGGGAAGAAAGCAGGG 420
consensus_6576#1 ------------------------------------------------------------
consensus_6576#0 GCACAACAACAAAGCAACAGCAAACATCACGTGCACGAAGAAGATATTCCGTGTGGCCTT 480
consensus_6576#1 --------------------------------------------TTCCTCGAGAACTGTT 16
* ** * **
consensus_6576#0 TACCCATTGGAAGATAACAACAATAATGCAAAAGGCAGAGCTAAGCATCAATGCGAGAAT 540
consensus_6576#1 GGCCCACTGGAA--TAATG-CAGGCAGGCA--GGGCAGTGCTAAGCATCAATGCGAGAAT 71
**** ***** *** ** * *** ***** *********************
consensus_6576#0 TGCCTCGAATCGTTCGACAGTATCGTTCGCCTGCGTCGGCACGAGCGAAAGCATTGGATG 600
consensus_6576#1 TGCCTCGAATCGTTCGACAGTATCGTTCGCCTGCGTCGGCACGAGCGAAAGCATTGGATG 131
************************************************************
consensus_6576#0 AAAAGCTGCCCAATATGCGACAAGACGGTGCAGGTGGATAATTTAAAGTTTCACATCGGT 660
consensus_6576#1 AAAAGCTGCCCAATATGCGACAAGACGGTGCAGGTGGATAATTTAAAGTTTCACATCGGT 191
************************************************************
consensus_6576#0 CGTATGCACGGTAGCGATGAGCGGTGTGCTGAAAAACGGCCCTTCCAGTGCACGGAATGC 720
consensus_6576#1 CGTATGCACGGTAGCGATGAGCGGTGTGCTGAAAAACGGCCCTTCCAGTGCACGGAATGC 251
************************************************************
consensus_6576#0 GATAAATCGTTCTTCCTCCCGAACCACCTGTTAGAGCATGGGCAGACGCACCAGAAGGCA 780
consensus_6576#1 GATAAATCGTTCTTCCTCCCGAACCACCTGTTAGAGCATGGGCAGACGCACCGGAAGGCA 311
**************************************************** *******
consensus_6576#0 AGCTGCCCGGTGTGTGGGGAATCGTTCAGACCGTCCTACCTCAAGAACCACATAGCTAGA 840
consensus_6576#1 AGCTGCCCGGTGTGTGGGGAATCGTTCAGACCGTCCTACCTCAAGAACCACATAGCTAGA 371
************************************************************
consensus_6576#0 AAGCATCCGGACGGTGACGCGAGACTTTCGAAAACCCCCACCGTGTACCGTTGCAGTGCA 900
consensus_6576#1 AAGCATCCGGACGGTGACGCGGGACTTTCGAAAACCCCCACCGTGTACCGTTGCAGTGCA 431
********************* **************************************
consensus_6576#0 TGCAAGCAAACGTTTGTCAGTAAATCCTTGCTCTGGACTCACCAGCAGATGCATAAGAAG 960
consensus_6576#1 TGCAAGCAAACATTTGTCAGTAAATCCTTGCTCTGGACTCACCAGCAGATGCATAAGAAG 491
*********** ************************************************
consensus_6576#0 GTGGAGTGTACTATATGCAACAAAACGTTCCGGCAGGATGGTATGAAAATGCACATGGCC 1020
consensus_6576#1 GTGGAGTGTACTATATGCAACAAAACGTTCCGGCAGGATGGTATGAAAATGCACATGGCC 551
************************************************************
consensus_6576#0 ACCACCCATCGGGAGTATCTGTCGCTTCGGAGACTCCATCGTACAAGTGTGATAAATGCG 1080
consensus_6576#1 ACCACCCATCGGGAGTTTTTGTCGCTTCGGAAACTCCATCGTACAAGTGTGATAAATGCG 611
**************** * ************ ****************************
consensus_6576#0 AACGGACATTCCTGTACAAAAAGCAGCTGACGAAGCACCAACGCTACCACCCCCGGATGA 1140
consensus_6576#1 AACGGACATTCCTGTACAAAAAGCAGCTGACGAAGCACCAACGCTACCACCCCCGGATGG 671
***********************************************************
consensus_6576#0 TAAAGTGTGCGATTTGTGAACGGTCGTTTAAAACGAACCACTTCAAAATCCACACAGCAG 1200
consensus_6576#1 TAAAGTGTGCGATTTGTGAACGGTCGTTTAAAACGAACCACTTCAAAATCCACACAGCAG 731
************************************************************
consensus_6576#0 AGGAACATGGTGCACCGGAGTAATGTGTGATTGTAAAACTCTATCGAAGCAAAAGTAGTA 1260
consensus_6576#1 AGGAACATGGTGCACCGGAGTAATGTGTGATTGTAAAACTCTATCGAAGCAAAAGTAGTA 791
************************************************************
consensus_6576#0 AAGAATTTTGAATTTTGAATCTAAAAAAAAAAAAAAAAAAGGCCACATGTGCTCGAGTTG 1320
consensus_6576#1 AAGAA------------------------------------------------------- 796
*****
consensus_6576#0 GG 1322
consensus_6576#1 --
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||