These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6577#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 861 fasta sequence [CCGCGTGCGTGTGCGGTACGTGGTCCGTGTGTTCGCTCCGAATGTTTTGGCGTTAGAAAAGGCCACACCAGAAAGGTAACAGTGAAGGAGGTCGTGCAAAGAAGCTGAAACGATCCAGCGCAGCAATAGAACAGCGTGCGGTGGCGCCGGGCCAAAGCGGTGTGCATTTCAATTAGGGAAAGAAAAAGGAATCGTGCTGCTTTTTCCCCCGTGCACTGCGACGAAGAGTAGTGTGCCCGGTGAGGGGGAGTCGCCGCCCCGGTTGTGTCTGTGATTGCTGTGTGAAGGATAGTGCAGTGTGCGTTATTTAACAGTTTGGGTGATTTGGGAGATTAGCGAAAATCATTGGTGCGATAACGCCCCGTGCGTCTGTGTGTGCGTCTGCAAAGTGTCCAGCGAAGTGTGTGAGGGTAGTGTGGCAGGGGTGGTATCGTGGGCGGTGTATGTGCGTTTGTTGAGTGGTTTAATTGGCGTTCTGTGTGGTGCATACTCACACACCAACACAGAAGGTGAGCAGAGTTGAATGAAAAGTGCATCGAATCAGTGCAGAAAAGTCCGCTCGGTGAATATGTGAAGTGCGTTTTGCTTCCGAGCCATTTCTTCGCTGGAAGAGGCCCGTATTCCGTTCTTGTGGGCTTCTTTGTTTAGGGTGTGCAGAGCAGAAGGAGCGCGAAAGAGAAGGAGCGTTGGTGTGCGAAACGAGAGCGAGCGAGCGAGAGCGAACGCGCAGACACACGCACACCGCAGGAGAGCAAGAGCACGAGCGAGAGAAAAAGGAAGAAGAAGAAGAAGAAGAGTAGAAAAACAACATCAACAGCAGCCAACGACCGCGCTTGAACCCATTGGACAAGGTTCTAGAGT] [+] EMBL BM623472 [CCGCGTGCGTGTGCGGTACGTGGTCCGTGTGTTCGCTCCGAATGTTTTGGCGTTAGAAAAGGCCACACCAGAAAGGTAACAGTGAAGGAGGTCGTGCAAAGAAGCTGAAACGATCCAGCGCAGCAATAGAACAGCGTGCGGTGGCGCCGGGCCAAAGCGGTGTGCATTTCAATTAGGGAAAGAAAAAGGAATCGTGCTGCTTTTTCCCCCGTGCACTGCGACGAAGAGTAGTGTGCCCGGTGAGGGGGAGTCGCCGCCCCGGTTGTGTCTGTGATTGCTGTGTGAAGGATAGTGCAGTGTGCGTTATTTAACAGTTTGGGTGATTTGGGAGATTAGCGAAAATCATTGGTGCGATAACGCCCCGTGCGTCTGTGTGTGCGTCTGCAAAGTGTCCAGCGAAGTGTGTGAGGGTAGTGTGGCAGGGGTGGTATCGTGGGCGGTGTATGTGCGTTTGTTGAGTGGTTTAATTGGCGTTCTGTGTGGTGCATACTCACACACCAACACAGAAGGTGAGCAGAGTTGAATGAAAAGTGCATCGAATCAGTGCAGAA ] [+] EMBL BM650329 [ ccgAGGGAAAGAAAAAGGAATCGTGCTGCTTTTTCCCCCGTGCACTGCGACGAAGAGTAGTGTGCCCGGTGAGGGGGAGTCGCCGCCCCGGTTGTGTCTGTGATTGCTGTGTGAAGGATAGTGCAGTGTGCGTTATTTAACAGTTTGGGTGATTTGGGAGATTAGCGAAAATCATTGGTGCGATAACGCCCCGTGCGTCTGTGTGTGCGTCTGCAAAGTGTCCAGCGAAGTGTGTGAGGGTAGTGTGGCAGGGGTGGTATCGTGGGCGGTGTATGTGCGTTTGTTGAGTGGTTTAATTGGCGTTCTGTGTGGTGCATACTCACACACCAACACAGAAGGTGAGCAGAGTTGAATGAAAAGTGCATCGAATCAGTGCAGAAAAGTCCGCTCGGTGAATATGTGAAGTGCGTTTTGCTTCCGAGCCATTTCTTCGCTGGAAGAGGCCCGTATTCCGTTCTTGTGGGCTTCTTTGTTTAGGGTGTGCAGAGCAGAAGGAGCGCGAAAGAGAAGGAGCGTTGGTGTGCGAAACGAGAGCGAGCGAGCGAGAGCGAACGCGCAGACACACGCACACCGCAGGAGAGCAAGAGCACGAGCGAGAGAAAAAGGAAGAAGAAGAAGAAGAAGAGTAGAAAAACAACATCAACAGCAGCCAACGACCGCGCTTGAACCCATTGGACAAGGTTCTAGAGT] consensusID : consensus_6577#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 633 fasta sequence [CCGCCCACGCGTCCGCACAGCGGACGGACGTGCGTGTGCGGTACGTGGTCCGTGTGTTCGCTCCGAATGTTTTGGCGTTAGAAAAGGCCACACCAGAAAGGCAACAGTGAAGGAGGTCGTGCAAAGAAGCTGAAACGATCCAACGCAGCAATAGAACAGCGTGCGGTGGCGCCGGGCCAAAGCGGGGTGTGCATTTCAATTAGGGAAAGAAAAAGGAATCGTGCTGCTTTTTCCCCCGTGCACTGCGACGAACAGTAGTGTGCCCGGTGAGGGGGAGTCGCCGCCCCGGTTGTGTCTGTGATTGCTGTGTGAAGGATAGTGCAGTGTGCGTTATTTAACAGATTGGGTGATTTAGGCGATTAGCGAAAATCATTGGTGCGATAACGCCCCGTGTGTGTGTGCGTCTGCAAAGTGTCCAGCGAAGTAATGTGTGGGGGTAGTGTGGCAGGGGTGGTATCGTGGGCGGTGTATGTGCGTTTGTGTTGCTCTGCAACACAGAAGGTGAGCAGAGTTGAATGAAAAGTGCATCAAATCAGTGCAGAAAAGTCCGCTCGGTGAATATGTGAAGTGCGTTTTCCTTCCGAGCCATTTCTTCGCTGGAAGAAGCCCGTATTCCGTTCTTGTGGGCTTCTT] [+] EMBL BM648862 [CCGCCCACGCGTCCGCACAGCGGACGGACGTGCGTGTGCGGTACGTGGTCCGTGTGTTCGCTCCGAATGTTTTGGCGTTAGAAAAGGCCACACCAGAAAGGCAACAGTGAAGGAGGTCGTGCAAAGAAGCTGAAACGATCCAACGCAGCAATAGAACAGCGTGCGGTGGCGCCGGGCCAAAGCGGGGTGTGCATTTCAATTAGGGAAAGAAAAAGGAATCGTGCTGCTTTTTCCCCCGTGCACTGCGACGAACAGTAGTGTGCCCGGTGAGGGGGAGTCGCCGCCCCGGTTGTGTCTGTGATTGCTGTGTGAAGGATAGTGCAGTGTGCGTTATTTAACAGATTGGGTGATTTAGGCGATTAGCGAAAATCATTGGTGCGATAACGCCCCGTGTGTGTGTGCGTCTGCAAAGTGTCCAGCGAAGTAATGTGTGGGGGTAGTGTGGCAGGGGTGGTATCGTGGGCGGTGTATGTGCGTTTGTGTTGCTCTGCAACACAGAAGGTGAGCAGAGTTGAATGAAAAGTGCATCAAATCAGTGCAGAAAAGTCCGCTCGGTGAATATGTGAAGTGCGTTTTCCTTCCGAGCCATTTCTTCGCT ] [+] EMBL BM641494 [ ccgCGTGCGTGTGCGGTACGTGGTCCGTGTGTTCGCTCCGAATGTTTTGGCGTTAGAAAAGGCCACACCAGAAAGGCAACAGTGAAGGAGGTCGTGCAAAGAAGCTGAAACGATCCAGCGCAGCAATAGAACAGCGTGCGGTGGCGCCGGGCCAAAGCGGGGTGTGCATTTCAATTAGGGAAAGAAAAAGGAATCGTGCTGCTTTTTCCCCCGTGCACTGCGACGAAGAGTAGTGTGCCCGGTGAGGGGGAGTCGCCGCCCCGGTTGTGTCTGTGATTGCTGTGTGAAGGATAGTGCAGTGTGCGTTATTTAACAGATTGGGTGATTTAGGCGATTAGCGAAAATCATTGGTGCGATAACGCCCCGTGTGTGTGTGCGTCTGCAAAGTGTCCAGCGAAGTAGTGTGTGGGGGTAGTGTGGCAGGGGTGGTATCGTGGGCGGTGTATGTGCGTTTGTGTTGCTCTGCAACACAGAAGGTGAGCAGAGTTGAATGAAAAGTGCATCGAATCAGTGCAGAAAAGTCCGCTCGGTGAATATGTGAAGTGCGTTTTCCTTCCGAGCCATTTCTTCGCTGGAAGAAGCCCGTATTCCGTTCTTGTGGGCTTCTT] consensusID : consensus_6577#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 351 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGAAACGATCCAGCGCAGCAATAGAACAGCGTGCGGTGGCGCCGGGCCAAAGCGGGGTGTGCATTTCAATTAGGGAAAGAAAAAGGAATCGTGCTGCTTTTTCCCCCGTGCACTGCGACGAAGAGTAGTGTGCCCGGTGAGGGGGAGTCGCCGCCCCGGTTGTGTCTGTGATTGCTGTGTGAAGGATAGTGCAGTGTGCGTTATTTAACAGATTGGGTGATTTAGGCGATTAGCGAAAATCATTGGTGCGATAACGCCCCGTGTGTGTGTGCGTCTGCAAAGTGTCCAGCGAAGTAGTGTGTGGGGGTAGTGTGGGCAGGGGTGG] [+] EMBL BM581026 [CCGCCCACGCGTCCGCCCACGCGTCCGGAAACGATCCAGCGCAGCAATAGAACAGCGTGCGGTGGCGCCGGGCCAAAGCGGGGTGTGCATTTCAATTAGGGAAAGAAAAAGGAATCGTGCTGCTTTTTCCCCCGTGCACTGCGACGAAGAGTAGTGTGCCCGGTGAGGGGGAGTCGCCGCCCCGGTTGTGTCTGTGATTGCTGTGTGAAGGATAGTGCAGTGTGCGTTATTTAACAGATTGGGTGATTTAGGCGATTAGCGAAAATCATTGGTGCGATAACGCCCCGTGTGTGTGTGCGTCTGCAAAGTGTCCAGCGAAGTAGTGTGTGGGGGTAGTGTGGGCAGGGGTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6577#0 -------------------------CCGCGTGCGTGTGCGGTACGTGGTCCGTGTGTTCG 35 consensus_6577#1 CCGCCCACGCGTCCGCACAGCGGACGGACGTGCGTGTGCGGTACGTGGTCCGTGTGTTCG 60 consensus_6577#2 ------------------------------------------------------------ consensus_6577#0 CTCCGAATGTTTTGGCGTTAGAAAAGGCCACACCAGAAAGGTAACAGTGAAGGAGGTCGT 95 consensus_6577#1 CTCCGAATGTTTTGGCGTTAGAAAAGGCCACACCAGAAAGGCAACAGTGAAGGAGGTCGT 120 consensus_6577#2 --------------------------------------------CCGCCCACGCGTCCGC 16 * * * * * ** consensus_6577#0 GCAAAGAAGCTGAAACGATCCAGCGCAGCAATAGAACAGCGTGCGGTGGCGCCGGGCCAA 155 consensus_6577#1 GCAAAGAAGCTGAAACGATCCAACGCAGCAATAGAACAGCGTGCGGTGGCGCCGGGCCAA 180 consensus_6577#2 CCACGCGTCCGGAAACGATCCAGCGCAGCAATAGAACAGCGTGCGGTGGCGCCGGGCCAA 76 ** * *********** ************************************* consensus_6577#0 AGCGG--TGTGCATTTCAATTAGGGAAAGAAAAAGGAATCGTGCTGCTTTTTCCCCCGTG 213 consensus_6577#1 AGCGGGGTGTGCATTTCAATTAGGGAAAGAAAAAGGAATCGTGCTGCTTTTTCCCCCGTG 240 consensus_6577#2 AGCGGGGTGTGCATTTCAATTAGGGAAAGAAAAAGGAATCGTGCTGCTTTTTCCCCCGTG 136 ***** ***************************************************** consensus_6577#0 CACTGCGACGAAGAGTAGTGTGCCCGGTGAGGGGGAGTCGCCGCCCCGGTTGTGTCTGTG 273 consensus_6577#1 CACTGCGACGAACAGTAGTGTGCCCGGTGAGGGGGAGTCGCCGCCCCGGTTGTGTCTGTG 300 consensus_6577#2 CACTGCGACGAAGAGTAGTGTGCCCGGTGAGGGGGAGTCGCCGCCCCGGTTGTGTCTGTG 196 ************ *********************************************** consensus_6577#0 ATTGCTGTGTGAAGGATAGTGCAGTGTGCGTTATTTAACAGTTTGGGTGATTTGGGAGAT 333 consensus_6577#1 ATTGCTGTGTGAAGGATAGTGCAGTGTGCGTTATTTAACAGATTGGGTGATTTAGGCGAT 360 consensus_6577#2 ATTGCTGTGTGAAGGATAGTGCAGTGTGCGTTATTTAACAGATTGGGTGATTTAGGCGAT 256 ***************************************** *********** ** *** consensus_6577#0 TAGCGAAAATCATTGGTGCGATAACGCCCCGTGCGTCTGTGTGTGCGTCTGCAAAGTGTC 393 consensus_6577#1 TAGCGAAAATCATTGGTGCGATAACGCCCCGTG----TGTGTGTGCGTCTGCAAAGTGTC 416 consensus_6577#2 TAGCGAAAATCATTGGTGCGATAACGCCCCGTG----TGTGTGTGCGTCTGCAAAGTGTC 312 ********************************* *********************** consensus_6577#0 CAGCGAAGT---GTGTGAGGGTAGTGTGG-CAGGGGTGGTATCGTGGGCGGTGTATGTGC 449 consensus_6577#1 CAGCGAAGTAATGTGTGGGGGTAGTGTGG-CAGGGGTGGTATCGTGGGCGGTGTATGTGC 475 consensus_6577#2 CAGCGAAGTAGTGTGTGGGGGTAGTGTGGGCAGGGGTGG--------------------- 351 ********* ***** *********** ********* consensus_6577#0 GTTTGTTGAGTGGTTTAATTGGCGTTCTGTGTGGTGCATACTCACACACCAACACAGAAG 509 consensus_6577#1 GTTTGT--------------GTTGCTCTG--------------------CAACACAGAAG 501 consensus_6577#2 ------------------------------------------------------------ consensus_6577#0 GTGAGCAGAGTTGAATGAAAAGTGCATCGAATCAGTGCAGAAAAGTCCGCTCGGTGAATA 569 consensus_6577#1 GTGAGCAGAGTTGAATGAAAAGTGCATCAAATCAGTGCAGAAAAGTCCGCTCGGTGAATA 561 consensus_6577#2 ------------------------------------------------------------ consensus_6577#0 TGTGAAGTGCGTTTTGCTTCCGAGCCATTTCTTCGCTGGAAGAGGCCCGTATTCCGTTCT 629 consensus_6577#1 TGTGAAGTGCGTTTTCCTTCCGAGCCATTTCTTCGCTGGAAGAAGCCCGTATTCCGTTCT 621 consensus_6577#2 ------------------------------------------------------------ consensus_6577#0 TGTGGGCTTCTTTGTTTAGGGTGTGCAGAGCAGAAGGAGCGCGAAAGAGAAGGAGCGTTG 689 consensus_6577#1 TGTGGGCTTCTT------------------------------------------------ 633 consensus_6577#2 ------------------------------------------------------------ consensus_6577#0 GTGTGCGAAACGAGAGCGAGCGAGCGAGAGCGAACGCGCAGACACACGCACACCGCAGGA 749 consensus_6577#1 ------------------------------------------------------------ consensus_6577#2 ------------------------------------------------------------ consensus_6577#0 GAGCAAGAGCACGAGCGAGAGAAAAAGGAAGAAGAAGAAGAAGAAGAGTAGAAAAACAAC 809 consensus_6577#1 ------------------------------------------------------------ consensus_6577#2 ------------------------------------------------------------ consensus_6577#0 ATCAACAGCAGCCAACGACCGCGCTTGAACCCATTGGACAAGGTTCTAGAGT 861 consensus_6577#1 ---------------------------------------------------- consensus_6577#2 ---------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||