Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 6577 cluster # 6577       Sequences # 5       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6577#0 length = 861 sequences # 2  
consensus_6577#1 length = 633 sequences # 2  
consensus_6577#2 length = 351 sequences # 1  

consensusID : consensus_6577#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 861
fasta sequence
                              [CCGCGTGCGTGTGCGGTACGTGGTCCGTGTGTTCGCTCCGAATGTTTTGGCGTTAGAAAAGGCCACACCAGAAAGGTAACAGTGAAGGAGGTCGTGCAAAGAAGCTGAAACGATCCAGCGCAGCAATAGAACAGCGTGCGGTGGCGCCGGGCCAAAGCGGTGTGCATTTCAATTAGGGAAAGAAAAAGGAATCGTGCTGCTTTTTCCCCCGTGCACTGCGACGAAGAGTAGTGTGCCCGGTGAGGGGGAGTCGCCGCCCCGGTTGTGTCTGTGATTGCTGTGTGAAGGATAGTGCAGTGTGCGTTATTTAACAGTTTGGGTGATTTGGGAGATTAGCGAAAATCATTGGTGCGATAACGCCCCGTGCGTCTGTGTGTGCGTCTGCAAAGTGTCCAGCGAAGTGTGTGAGGGTAGTGTGGCAGGGGTGGTATCGTGGGCGGTGTATGTGCGTTTGTTGAGTGGTTTAATTGGCGTTCTGTGTGGTGCATACTCACACACCAACACAGAAGGTGAGCAGAGTTGAATGAAAAGTGCATCGAATCAGTGCAGAAAAGTCCGCTCGGTGAATATGTGAAGTGCGTTTTGCTTCCGAGCCATTTCTTCGCTGGAAGAGGCCCGTATTCCGTTCTTGTGGGCTTCTTTGTTTAGGGTGTGCAGAGCAGAAGGAGCGCGAAAGAGAAGGAGCGTTGGTGTGCGAAACGAGAGCGAGCGAGCGAGAGCGAACGCGCAGACACACGCACACCGCAGGAGAGCAAGAGCACGAGCGAGAGAAAAAGGAAGAAGAAGAAGAAGAAGAGTAGAAAAACAACATCAACAGCAGCCAACGACCGCGCTTGAACCCATTGGACAAGGTTCTAGAGT]

[+] EMBL BM623472             [CCGCGTGCGTGTGCGGTACGTGGTCCGTGTGTTCGCTCCGAATGTTTTGGCGTTAGAAAAGGCCACACCAGAAAGGTAACAGTGAAGGAGGTCGTGCAAAGAAGCTGAAACGATCCAGCGCAGCAATAGAACAGCGTGCGGTGGCGCCGGGCCAAAGCGGTGTGCATTTCAATTAGGGAAAGAAAAAGGAATCGTGCTGCTTTTTCCCCCGTGCACTGCGACGAAGAGTAGTGTGCCCGGTGAGGGGGAGTCGCCGCCCCGGTTGTGTCTGTGATTGCTGTGTGAAGGATAGTGCAGTGTGCGTTATTTAACAGTTTGGGTGATTTGGGAGATTAGCGAAAATCATTGGTGCGATAACGCCCCGTGCGTCTGTGTGTGCGTCTGCAAAGTGTCCAGCGAAGTGTGTGAGGGTAGTGTGGCAGGGGTGGTATCGTGGGCGGTGTATGTGCGTTTGTTGAGTGGTTTAATTGGCGTTCTGTGTGGTGCATACTCACACACCAACACAGAAGGTGAGCAGAGTTGAATGAAAAGTGCATCGAATCAGTGCAGAA                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL BM650329             [                                                                                                                                                                           ccgAGGGAAAGAAAAAGGAATCGTGCTGCTTTTTCCCCCGTGCACTGCGACGAAGAGTAGTGTGCCCGGTGAGGGGGAGTCGCCGCCCCGGTTGTGTCTGTGATTGCTGTGTGAAGGATAGTGCAGTGTGCGTTATTTAACAGTTTGGGTGATTTGGGAGATTAGCGAAAATCATTGGTGCGATAACGCCCCGTGCGTCTGTGTGTGCGTCTGCAAAGTGTCCAGCGAAGTGTGTGAGGGTAGTGTGGCAGGGGTGGTATCGTGGGCGGTGTATGTGCGTTTGTTGAGTGGTTTAATTGGCGTTCTGTGTGGTGCATACTCACACACCAACACAGAAGGTGAGCAGAGTTGAATGAAAAGTGCATCGAATCAGTGCAGAAAAGTCCGCTCGGTGAATATGTGAAGTGCGTTTTGCTTCCGAGCCATTTCTTCGCTGGAAGAGGCCCGTATTCCGTTCTTGTGGGCTTCTTTGTTTAGGGTGTGCAGAGCAGAAGGAGCGCGAAAGAGAAGGAGCGTTGGTGTGCGAAACGAGAGCGAGCGAGCGAGAGCGAACGCGCAGACACACGCACACCGCAGGAGAGCAAGAGCACGAGCGAGAGAAAAAGGAAGAAGAAGAAGAAGAAGAGTAGAAAAACAACATCAACAGCAGCCAACGACCGCGCTTGAACCCATTGGACAAGGTTCTAGAGT]


>consensus_6577#0 CCGCGTGCGTGTGCGGTACGTGGTCCGTGTGTTCGCTCCGAATGTTTTGGCGTTAGAAAA GGCCACACCAGAAAGGTAACAGTGAAGGAGGTCGTGCAAAGAAGCTGAAACGATCCAGCG CAGCAATAGAACAGCGTGCGGTGGCGCCGGGCCAAAGCGGTGTGCATTTCAATTAGGGAA AGAAAAAGGAATCGTGCTGCTTTTTCCCCCGTGCACTGCGACGAAGAGTAGTGTGCCCGG TGAGGGGGAGTCGCCGCCCCGGTTGTGTCTGTGATTGCTGTGTGAAGGATAGTGCAGTGT GCGTTATTTAACAGTTTGGGTGATTTGGGAGATTAGCGAAAATCATTGGTGCGATAACGC CCCGTGCGTCTGTGTGTGCGTCTGCAAAGTGTCCAGCGAAGTGTGTGAGGGTAGTGTGGC AGGGGTGGTATCGTGGGCGGTGTATGTGCGTTTGTTGAGTGGTTTAATTGGCGTTCTGTG TGGTGCATACTCACACACCAACACAGAAGGTGAGCAGAGTTGAATGAAAAGTGCATCGAA TCAGTGCAGAAAAGTCCGCTCGGTGAATATGTGAAGTGCGTTTTGCTTCCGAGCCATTTC TTCGCTGGAAGAGGCCCGTATTCCGTTCTTGTGGGCTTCTTTGTTTAGGGTGTGCAGAGC AGAAGGAGCGCGAAAGAGAAGGAGCGTTGGTGTGCGAAACGAGAGCGAGCGAGCGAGAGC GAACGCGCAGACACACGCACACCGCAGGAGAGCAAGAGCACGAGCGAGAGAAAAAGGAAG AAGAAGAAGAAGAAGAGTAGAAAAACAACATCAACAGCAGCCAACGACCGCGCTTGAACC CATTGGACAAGGTTCTAGAGT



consensusID : consensus_6577#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 633
fasta sequence
                              [CCGCCCACGCGTCCGCACAGCGGACGGACGTGCGTGTGCGGTACGTGGTCCGTGTGTTCGCTCCGAATGTTTTGGCGTTAGAAAAGGCCACACCAGAAAGGCAACAGTGAAGGAGGTCGTGCAAAGAAGCTGAAACGATCCAACGCAGCAATAGAACAGCGTGCGGTGGCGCCGGGCCAAAGCGGGGTGTGCATTTCAATTAGGGAAAGAAAAAGGAATCGTGCTGCTTTTTCCCCCGTGCACTGCGACGAACAGTAGTGTGCCCGGTGAGGGGGAGTCGCCGCCCCGGTTGTGTCTGTGATTGCTGTGTGAAGGATAGTGCAGTGTGCGTTATTTAACAGATTGGGTGATTTAGGCGATTAGCGAAAATCATTGGTGCGATAACGCCCCGTGTGTGTGTGCGTCTGCAAAGTGTCCAGCGAAGTAATGTGTGGGGGTAGTGTGGCAGGGGTGGTATCGTGGGCGGTGTATGTGCGTTTGTGTTGCTCTGCAACACAGAAGGTGAGCAGAGTTGAATGAAAAGTGCATCAAATCAGTGCAGAAAAGTCCGCTCGGTGAATATGTGAAGTGCGTTTTCCTTCCGAGCCATTTCTTCGCTGGAAGAAGCCCGTATTCCGTTCTTGTGGGCTTCTT]

[+] EMBL BM648862             [CCGCCCACGCGTCCGCACAGCGGACGGACGTGCGTGTGCGGTACGTGGTCCGTGTGTTCGCTCCGAATGTTTTGGCGTTAGAAAAGGCCACACCAGAAAGGCAACAGTGAAGGAGGTCGTGCAAAGAAGCTGAAACGATCCAACGCAGCAATAGAACAGCGTGCGGTGGCGCCGGGCCAAAGCGGGGTGTGCATTTCAATTAGGGAAAGAAAAAGGAATCGTGCTGCTTTTTCCCCCGTGCACTGCGACGAACAGTAGTGTGCCCGGTGAGGGGGAGTCGCCGCCCCGGTTGTGTCTGTGATTGCTGTGTGAAGGATAGTGCAGTGTGCGTTATTTAACAGATTGGGTGATTTAGGCGATTAGCGAAAATCATTGGTGCGATAACGCCCCGTGTGTGTGTGCGTCTGCAAAGTGTCCAGCGAAGTAATGTGTGGGGGTAGTGTGGCAGGGGTGGTATCGTGGGCGGTGTATGTGCGTTTGTGTTGCTCTGCAACACAGAAGGTGAGCAGAGTTGAATGAAAAGTGCATCAAATCAGTGCAGAAAAGTCCGCTCGGTGAATATGTGAAGTGCGTTTTCCTTCCGAGCCATTTCTTCGCT                                   ]
[+] EMBL BM641494             [                         ccgCGTGCGTGTGCGGTACGTGGTCCGTGTGTTCGCTCCGAATGTTTTGGCGTTAGAAAAGGCCACACCAGAAAGGCAACAGTGAAGGAGGTCGTGCAAAGAAGCTGAAACGATCCAGCGCAGCAATAGAACAGCGTGCGGTGGCGCCGGGCCAAAGCGGGGTGTGCATTTCAATTAGGGAAAGAAAAAGGAATCGTGCTGCTTTTTCCCCCGTGCACTGCGACGAAGAGTAGTGTGCCCGGTGAGGGGGAGTCGCCGCCCCGGTTGTGTCTGTGATTGCTGTGTGAAGGATAGTGCAGTGTGCGTTATTTAACAGATTGGGTGATTTAGGCGATTAGCGAAAATCATTGGTGCGATAACGCCCCGTGTGTGTGTGCGTCTGCAAAGTGTCCAGCGAAGTAGTGTGTGGGGGTAGTGTGGCAGGGGTGGTATCGTGGGCGGTGTATGTGCGTTTGTGTTGCTCTGCAACACAGAAGGTGAGCAGAGTTGAATGAAAAGTGCATCGAATCAGTGCAGAAAAGTCCGCTCGGTGAATATGTGAAGTGCGTTTTCCTTCCGAGCCATTTCTTCGCTGGAAGAAGCCCGTATTCCGTTCTTGTGGGCTTCTT]


>consensus_6577#1 CCGCCCACGCGTCCGCACAGCGGACGGACGTGCGTGTGCGGTACGTGGTCCGTGTGTTCG CTCCGAATGTTTTGGCGTTAGAAAAGGCCACACCAGAAAGGCAACAGTGAAGGAGGTCGT GCAAAGAAGCTGAAACGATCCAACGCAGCAATAGAACAGCGTGCGGTGGCGCCGGGCCAA AGCGGGGTGTGCATTTCAATTAGGGAAAGAAAAAGGAATCGTGCTGCTTTTTCCCCCGTG CACTGCGACGAACAGTAGTGTGCCCGGTGAGGGGGAGTCGCCGCCCCGGTTGTGTCTGTG ATTGCTGTGTGAAGGATAGTGCAGTGTGCGTTATTTAACAGATTGGGTGATTTAGGCGAT TAGCGAAAATCATTGGTGCGATAACGCCCCGTGTGTGTGTGCGTCTGCAAAGTGTCCAGC GAAGTAATGTGTGGGGGTAGTGTGGCAGGGGTGGTATCGTGGGCGGTGTATGTGCGTTTG TGTTGCTCTGCAACACAGAAGGTGAGCAGAGTTGAATGAAAAGTGCATCAAATCAGTGCA GAAAAGTCCGCTCGGTGAATATGTGAAGTGCGTTTTCCTTCCGAGCCATTTCTTCGCTGG AAGAAGCCCGTATTCCGTTCTTGTGGGCTTCTT



consensusID : consensus_6577#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 351
fasta sequence
                              [CCGCCCACGCGTCCGCCCACGCGTCCGGAAACGATCCAGCGCAGCAATAGAACAGCGTGCGGTGGCGCCGGGCCAAAGCGGGGTGTGCATTTCAATTAGGGAAAGAAAAAGGAATCGTGCTGCTTTTTCCCCCGTGCACTGCGACGAAGAGTAGTGTGCCCGGTGAGGGGGAGTCGCCGCCCCGGTTGTGTCTGTGATTGCTGTGTGAAGGATAGTGCAGTGTGCGTTATTTAACAGATTGGGTGATTTAGGCGATTAGCGAAAATCATTGGTGCGATAACGCCCCGTGTGTGTGTGCGTCTGCAAAGTGTCCAGCGAAGTAGTGTGTGGGGGTAGTGTGGGCAGGGGTGG]

[+] EMBL BM581026             [CCGCCCACGCGTCCGCCCACGCGTCCGGAAACGATCCAGCGCAGCAATAGAACAGCGTGCGGTGGCGCCGGGCCAAAGCGGGGTGTGCATTTCAATTAGGGAAAGAAAAAGGAATCGTGCTGCTTTTTCCCCCGTGCACTGCGACGAAGAGTAGTGTGCCCGGTGAGGGGGAGTCGCCGCCCCGGTTGTGTCTGTGATTGCTGTGTGAAGGATAGTGCAGTGTGCGTTATTTAACAGATTGGGTGATTTAGGCGATTAGCGAAAATCATTGGTGCGATAACGCCCCGTGTGTGTGTGCGTCTGCAAAGTGTCCAGCGAAGTAGTGTGTGGGGGTAGTGTGGGCAGGGGTGG]


>consensus_6577#2 CCGCCCACGCGTCCGCCCACGCGTCCGGAAACGATCCAGCGCAGCAATAGAACAGCGTGC GGTGGCGCCGGGCCAAAGCGGGGTGTGCATTTCAATTAGGGAAAGAAAAAGGAATCGTGC TGCTTTTTCCCCCGTGCACTGCGACGAAGAGTAGTGTGCCCGGTGAGGGGGAGTCGCCGC CCCGGTTGTGTCTGTGATTGCTGTGTGAAGGATAGTGCAGTGTGCGTTATTTAACAGATT GGGTGATTTAGGCGATTAGCGAAAATCATTGGTGCGATAACGCCCCGTGTGTGTGTGCGT CTGCAAAGTGTCCAGCGAAGTAGTGTGTGGGGGTAGTGTGGGCAGGGGTGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6577#0      -------------------------CCGCGTGCGTGTGCGGTACGTGGTCCGTGTGTTCG 35
consensus_6577#1      CCGCCCACGCGTCCGCACAGCGGACGGACGTGCGTGTGCGGTACGTGGTCCGTGTGTTCG 60
consensus_6577#2      ------------------------------------------------------------
                                                                                  

consensus_6577#0      CTCCGAATGTTTTGGCGTTAGAAAAGGCCACACCAGAAAGGTAACAGTGAAGGAGGTCGT 95
consensus_6577#1      CTCCGAATGTTTTGGCGTTAGAAAAGGCCACACCAGAAAGGCAACAGTGAAGGAGGTCGT 120
consensus_6577#2      --------------------------------------------CCGCCCACGCGTCCGC 16
                                                                  * *   * * *  ** 

consensus_6577#0      GCAAAGAAGCTGAAACGATCCAGCGCAGCAATAGAACAGCGTGCGGTGGCGCCGGGCCAA 155
consensus_6577#1      GCAAAGAAGCTGAAACGATCCAACGCAGCAATAGAACAGCGTGCGGTGGCGCCGGGCCAA 180
consensus_6577#2      CCACGCGTCCGGAAACGATCCAGCGCAGCAATAGAACAGCGTGCGGTGGCGCCGGGCCAA 76
                       **      * *********** *************************************

consensus_6577#0      AGCGG--TGTGCATTTCAATTAGGGAAAGAAAAAGGAATCGTGCTGCTTTTTCCCCCGTG 213
consensus_6577#1      AGCGGGGTGTGCATTTCAATTAGGGAAAGAAAAAGGAATCGTGCTGCTTTTTCCCCCGTG 240
consensus_6577#2      AGCGGGGTGTGCATTTCAATTAGGGAAAGAAAAAGGAATCGTGCTGCTTTTTCCCCCGTG 136
                      *****  *****************************************************

consensus_6577#0      CACTGCGACGAAGAGTAGTGTGCCCGGTGAGGGGGAGTCGCCGCCCCGGTTGTGTCTGTG 273
consensus_6577#1      CACTGCGACGAACAGTAGTGTGCCCGGTGAGGGGGAGTCGCCGCCCCGGTTGTGTCTGTG 300
consensus_6577#2      CACTGCGACGAAGAGTAGTGTGCCCGGTGAGGGGGAGTCGCCGCCCCGGTTGTGTCTGTG 196
                      ************ ***********************************************

consensus_6577#0      ATTGCTGTGTGAAGGATAGTGCAGTGTGCGTTATTTAACAGTTTGGGTGATTTGGGAGAT 333
consensus_6577#1      ATTGCTGTGTGAAGGATAGTGCAGTGTGCGTTATTTAACAGATTGGGTGATTTAGGCGAT 360
consensus_6577#2      ATTGCTGTGTGAAGGATAGTGCAGTGTGCGTTATTTAACAGATTGGGTGATTTAGGCGAT 256
                      ***************************************** *********** ** ***

consensus_6577#0      TAGCGAAAATCATTGGTGCGATAACGCCCCGTGCGTCTGTGTGTGCGTCTGCAAAGTGTC 393
consensus_6577#1      TAGCGAAAATCATTGGTGCGATAACGCCCCGTG----TGTGTGTGCGTCTGCAAAGTGTC 416
consensus_6577#2      TAGCGAAAATCATTGGTGCGATAACGCCCCGTG----TGTGTGTGCGTCTGCAAAGTGTC 312
                      *********************************    ***********************

consensus_6577#0      CAGCGAAGT---GTGTGAGGGTAGTGTGG-CAGGGGTGGTATCGTGGGCGGTGTATGTGC 449
consensus_6577#1      CAGCGAAGTAATGTGTGGGGGTAGTGTGG-CAGGGGTGGTATCGTGGGCGGTGTATGTGC 475
consensus_6577#2      CAGCGAAGTAGTGTGTGGGGGTAGTGTGGGCAGGGGTGG--------------------- 351
                      *********   ***** *********** *********                     

consensus_6577#0      GTTTGTTGAGTGGTTTAATTGGCGTTCTGTGTGGTGCATACTCACACACCAACACAGAAG 509
consensus_6577#1      GTTTGT--------------GTTGCTCTG--------------------CAACACAGAAG 501
consensus_6577#2      ------------------------------------------------------------
                                                                                  

consensus_6577#0      GTGAGCAGAGTTGAATGAAAAGTGCATCGAATCAGTGCAGAAAAGTCCGCTCGGTGAATA 569
consensus_6577#1      GTGAGCAGAGTTGAATGAAAAGTGCATCAAATCAGTGCAGAAAAGTCCGCTCGGTGAATA 561
consensus_6577#2      ------------------------------------------------------------
                                                                                  

consensus_6577#0      TGTGAAGTGCGTTTTGCTTCCGAGCCATTTCTTCGCTGGAAGAGGCCCGTATTCCGTTCT 629
consensus_6577#1      TGTGAAGTGCGTTTTCCTTCCGAGCCATTTCTTCGCTGGAAGAAGCCCGTATTCCGTTCT 621
consensus_6577#2      ------------------------------------------------------------
                                                                                  

consensus_6577#0      TGTGGGCTTCTTTGTTTAGGGTGTGCAGAGCAGAAGGAGCGCGAAAGAGAAGGAGCGTTG 689
consensus_6577#1      TGTGGGCTTCTT------------------------------------------------ 633
consensus_6577#2      ------------------------------------------------------------
                                                                                  

consensus_6577#0      GTGTGCGAAACGAGAGCGAGCGAGCGAGAGCGAACGCGCAGACACACGCACACCGCAGGA 749
consensus_6577#1      ------------------------------------------------------------
consensus_6577#2      ------------------------------------------------------------
                                                                                  

consensus_6577#0      GAGCAAGAGCACGAGCGAGAGAAAAAGGAAGAAGAAGAAGAAGAAGAGTAGAAAAACAAC 809
consensus_6577#1      ------------------------------------------------------------
consensus_6577#2      ------------------------------------------------------------
                                                                                  

consensus_6577#0      ATCAACAGCAGCCAACGACCGCGCTTGAACCCATTGGACAAGGTTCTAGAGT 861
consensus_6577#1      ----------------------------------------------------
consensus_6577#2      ----------------------------------------------------
                                                                          




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)