These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6578#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 895 fasta sequence [GAGGTTAAATGATACGCGTCTCGTGGCCGAGCTGCAGAAGCGCGTGCAGGGTACGCATATGCAGCCGAAGCTGCAAATCCTGATTGGTGATGTGCTGAAAACGGATCTACCGTTTTTTGACATCTGCGTCGCTAACATGCCGTACCAGATCAGTTCACCGTTCGTCTTTTACATGGGCACCCTAGCTTGCTTACATACNTAGATGGGGACGACCCCCCGTTTTATAATAATACACTGACAGTTTGTCCTGGCCCTTTGGATTGCCCATTTTGGGGCGAACCTTTGGGTTNTTACCCGCCNAAAGGGGCCCTGGGAANGGCGAACAGGATTTNTATTAGGGCCGCCCTCCAAAAACCTGAGAGNTACTAATGCAGGAGTGATNGNGTGTGCCCCGACTAAAAGTCCCCNGGTGGACGGTGCCGGAGAAATGGTTCAAAAATGTCNCCCTCTTGGGGTTTAAGACCGCTAGGTGATTCCCTGGAGTGNGNCCCCTTCAAATAAGTGCGCCCAAACTTTCCCGAAAGAAAGCCGCGAAGCCGCCTACCCAATGTGCACCCNTATTGGTCACCGATTTGTGNGTGGACCCACCCCCCCCTGGGCCAGGGGATTTCCCNGCACAAACGTTTCAACACTTTTTGGGCGCCCCCACGTTTNTGGGGGGCGCACAACCATTTTTTTGGNNGTCGACACANAACGCACAACAGGGTGGGGGGGAATTTTGTGAGGGTGTGGTGCTGGTGCAAAACACAAACATNTGGTGTACAAAANAANNCACCGCGAATAACAACNGAGCTTTGTTGCCCCCTNGAGTAAAGTATAAATGNCGCCCCTACCCCAGCCCCGGACACTGAACAAGTNGGACTGCGCAAAGGGCTCCGCAAGCCGGCNTGTGGAT] [+] EMBL AL933512 [GAGGTTAAATGATACGCGTCTCGTGGCCGAGCTGCAGAAGCGCGTGCAGGGTACGCATATGCAGCCGAAGCTGCAAATCCTGATTGGTGATGTGCTGAAAACGGATCTACCGTTTTTTGACATCTGCGTCGCTAACATGCCGTACCAGATCAGTTCACCGTTCGTCTTTTACATGGGCACCCTAGCTTGCTTACATACNTAGATGGGGACGACCCCCCGTTTTATAATAATACACTGACAGTTTGTCCTGGCCCTTTGGATTGCCCATTTTGGGGCGAACCTTTGGGTTNTTACCCGCCNAAAGGGGCCCTGGGAANGGCGAACAGGATTTNTATTAGGGCCGCCCTCCAAAAACCTGAGAGNTACTAATGCAGGAGTGATNGNGTGTGCCCCGACTAAAAGTCCCCNGGTGGACGGTGCCGGAGAAATGGTTCAAAAATGTCNCCCTCTTGGGGTTTAAGACCGCTAGGTGATTCCCTGGAGTGNGNCCCCTTCAAATAAGTGCGCCCAAACTTTCCCGAAAGAAAGCCGCGAAGCCGCCTACCCAATGTGCACCCNTATTGGTCACCGATTTGTGNGTGGACCCACCCCCCCCTGGGCCAGGGGATTTCCCNGCACAAACGTTTCAACACTTTTTGGGCGCCCCCACGTTTNTGGGGGGCGCACAACCATTTTTTTGGNNGTCGACACANAACGCACAACAGGGTGGGGGGGAATTTTGTGAGGGTGTGGTGCTGGTGCAAAACACAAACATNTGGTGTACAAAANAANNCACCGCGAATAACAACNGAGCTTTGTTGCCCCCTNGAGTAAAGTATAAATGNCGCCCCTACCCCAGCCCCGGACACTGAACAAGTNGGACTGCGCAAAGGGCTCCGCAAGCCGGCNTGTGGAT] consensusID : consensus_6578#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 670 fasta sequence [CCGCGGACGCGTGGGTCGAGTTACACACAGCCAAACCAAGTATCATTGCTACAAAATGCCGAAAGTGCGTGCAGAAAAGAAATCCCGTGTACATGATGGAGTTGCAAAACAGGGCATCGTGTTCAACAAAGATTTCGGTCAACACATCCTCAAAAACCCGCTCGTCATCACCTCGATGCTGGAAAAGGCGGCATTGCGGCCCACGGATGTTGTGCTCGAAATTGGTCCCGGTACCGGTAACATGACCGTGAAGATACTGGAAAAGGTAAAGAAAGTGGTTGCCTGCGAAATTGATACGCGTCTCGTGGCCGAGCTGCAGAAGCGCGTGCAGGGTACGCATATGCAGCCGAAGCTGCAAATCCTGATTGGTGATGTGCTGAAAACGGATCTACCGTTTTTTGACATCTGCGTCGCTAACATGCCGTACCAGATCAGTTCACCGTTCGTCTTTAAGCTGCTGCTTCATCGGCCCTTTTTCCGCTGCGCTGTGCTGATGTTCCAGCGAGAGTTTGCCCAACGTTTGGTGGCCAAACCGGGCGATAAGCTGTACTGTCGGCTAAGCATCAACACCCAGCTGCTTGCCCGCGTCGATATGCTGATGAAGGTGGGGAAGAACAACTTCAAACCCCCGCCGAAGGTGGAGTCGAGCGTGGTAAGAATAGAGCCGCGA] [+] EMBL BM576022 [CCGCGGACGCGTGGGTCGAGTTACACACAGCCAAACCAAGTATCATTGCTACAAAATGCCGAAAGTGCGTGCAGAAAAGAAATCCCGTGTACATGATGGAGTTGCAAAACAGGGCATCGTGTTCAACAAAGATTTCGGTCAACACATCCTCAAAAACCCGCTCGTCATCACCTCGATGCTGGAAAAGGCGGCATTGCGGCCCACGGATGTTGTGCTCGAAATTGGTCCCGGTACCGGTAACATGACCGTGAAGATACTGGAAAAGGTAAAGAAAGTGGTTGCCTGCGAAATTGATACGCGTCTCGTGGCCGAGCTGCAGAAGCGCGTGCAGGGTACGCATATGCAGCCGAAGCTGCAAATCCTGATTGGTGATGTGCTGAAAACGGATCTACCGTTTTTTGACATCTGCGTCGCTAACATGCCGTACCAGATCAGTTCACCGTTCGTCTTTAAGCTGCTGCTTCATCGGCCCTTTTTCCGCTGCGCTGTGCTGATGTTCCAGCGAGAGTTTGCCCAACGTTTGGTGGCCAAACCGGGCGATAAGCTGTACTGTCGGCTAAGCATCAACACCCAGCTGCTTGCCCGCGTCGATATGCTGATGAAGGTGGGGAAGAACAACTTCAAACCCCCGCCGAAGGTGGAGTCGAGCGTGGTAAGAATAGAGCCGCGA] consensusID : consensus_6578#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 574 fasta sequence [GAATCGCCACGAGGTAGGGTGCGGGTATTTGCAGTGCATCGAGTTACACACAGCCAAACCAAGTATCATTGCTACAAAATGCCGAAAGTGCGTGCAGAAAAGAAATCCCGTGTACATGATGGAGTTGCAAAACAGGGCATCGTGTTCAACAAAGATTTCGGCCAACACATCCTCAAAAACCCACTCGTCATCACCTCGATGCTGGAAAAGGCGGCATTGCGGCCCACGGATGTTGTGCTCGAAATTGGTCCCGGTACCGGTAACATGACCGTGAAGATACTGGAAAAGGTAAAGAAAGTGGTTGCCTGCGAAATTGATACGCGTCTCGTGGCCGAGCTGCAGAAGCGCGTGCAGGGTACGCATATGCAGCCGAAGCTGCAAATCCTGATTGGTGATGTGCTGAAAACGGATCTACCGTTTTTTGACATCTGCGTCGCTAACATGCCGTACCAGATCAGTTCACCGTTCGTCTTTAAGCTGCTGCTTCATCGGCCCTTTTTCCGCTGCGCTGTGCTGATGTTCCAGGCGTGAGTTCGCGCCAACGTTTGGTGGCCAAACCGGGCGATAAGCTGTA] [+] EMBL BX466272 [GAATCGCCACGAGGTAGGGTGCGGGTATTTGCAGTGCATCGAGTTACACACAGCCAAACCAAGTATCATTGCTACAAAATGCCGAAAGTGCGTGCAGAAAAGAAATCCCGTGTACATGATGGAGTTGCAAAACAGGGCATCGTGTTCAACAAAGATTTCGGCCAACACATCCTCAAAAACCCACTCGTCATCACCTCGATGCTGGAAAAGGCGGCATTGCGGCCCACGGATGTTGTGCTCGAAATTGGTCCCGGTACCGGTAACATGACCGTGAAGATACTGGAAAAGGTAAAGAAAGTGGTTGCCTGCGAAATTGATACGCGTCTCGTGGCCGAGCTGCAGAAGCGCGTGCAGGGTACGCATATGCAGCCGAAGCTGCAAATCCTGATTGGTGATGTGCTGAAAACGGATCTACCGTTTTTTGACATCTGCGTCGCTAACATGCCGTACCAGATCAGTTCACCGTTCGTCTTTAAGCTGCTGCTTCATCGGCCCTTTTTCCGCTGCGCTGTGCTGATGTTCCAGGCGTGAGTTCGCGCCAACGTTTGGTGGCCAAACCGGGCGATAAGCTGTA] [+] EMBL BM644728 [ cCGGTAATTTGCAGTGCATCGAGTTACACACAGCCAAACCAAGTATCATTGCTACAAAATGCCGAAAGTGCGTGCAGAAAAGAAATCCCGTGTACATGATGGAGTTGCAAAACAGGGCATCGTGTTCAACAAAGATTTCGGTCAACACATCCTCAAAAACCCGCTCGTCATCACCTCGATGCTGGAAAAGGCGGCATTGCGGCCCACGGATGTTGTGCTCGAAATTGGTCCCGGTACCGGTAACATGACCGTGAAGATACTGGAAAAGGTAAAGAAAGTGGTTGCCTGCGAAATTGATACGCGTCTCGTGGCCGAGCTGCAGAAGCGCGTGCAGGGTACGCATATGCAGCCGAAGCTGCAAATCCTGATTGGTGATGTGCTGAAAACGGATCTACCGTTTTTTGACATCTGCGTCGCTAACATGCCGTACCAGATCAGTTCACCGTTCGTCTTTAAGCTGCTGCTT ] consensusID : consensus_6578#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 513 fasta sequence [TCCCCCGAGGTTATCCTCAAAAACCGCTCGTCATCACCTCGATGCTGGAAAAGGCGGCATTGCGGCCTACGGATGTGGTGCTCGAAATTGGTCCCGGTACCGGTAACATGACCGTGAAGATACTGGAAAAGGTAAAGAAAGTGGTTGCATGCGAAATTGATACACGTCTCGTGGCCGAGCTGCAGAAGCGCGTTCAGGGTACGCATATGCAGCCGAAGCTGCAAATTCTGATCGGTGATGTGCTGAAAACGGATCTACCGTTTTTTGACATCTGCGTCGCTAACATGCCGTACCAGATCAGTTCACCGTTCGTCTTTAAGCTGCTGCTTCATCGGCCCTTTTTCCGCTGCGCTGTGCTGATGTTCCAGCGAGAGTTTGCCCAACGTTTGGTGGCCAAACCGGGCGATAAGCTGTACTGTCGGCTAAGCATCAACACCCAGCTGCTTGCCCGCGTCGATATGCTGATGAAGGTGGGGAAGAACAACTTCAAACCCCGCCGAAGGTGGAGTCGAG] [+] EMBL AL929654 [TCCCCCGAGGTTATCCTCAAAAACCGCTCGTCATCACCTCGATGCTGGAAAAGGCGGCATTGCGGCCTACGGATGTGGTGCTCGAAATTGGTCCCGGTACCGGTAACATGACCGTGAAGATACTGGAAAAGGTAAAGAAAGTGGTTGCATGCGAAATTGATACACGTCTCGTGGCCGAGCTGCAGAAGCGCGTTCAGGGTACGCATATGCAGCCGAAGCTGCAAATTCTGATCGGTGATGTGCTGAAAACGGATCTACCGTTTTTTGACATCTGCGTCGCTAACATGCCGTACCAGATCAGTTCACCGTTCGTCTTTAAGCTGCTGCTTCATCGGCCCTTTTTCCGCTGCGCTGTGCTGATGTTCCAGCGAGAGTTTGCCCAACGTTTGGTGGCCAAACCGGGCGATAAGCTGTACTGTCGGCTAAGCATCAACACCCAGCTGCTTGCCCGCGTCGATATGCTGATGAAGGTGGGGAAGAACAACTTCAAACCCCGCCGAAGGTGGAGTCGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6578#1 ------------------------------------------------------------ consensus_6578#3 ------------------------------------------------------------ consensus_6578#2 ------------------------------------------------------------ consensus_6578#0 GAGGTTAAATGATACGCGTCTCGTGGCCGAGCTGCAGAAGCGCGTGCAGGGTACGCATAT 60 consensus_6578#1 ---------------------------------------CCGCGGACGCGTGGGTCGAGT 21 consensus_6578#3 ------------------------------------------------------------ consensus_6578#2 ----------------GAATCGCCACGAGGTAGGGTGCGGGTATTTGCAGTGCATCGAGT 44 consensus_6578#0 GCAGCCGAAGCTGCAAATCCTGATTGGTGATGTGCTGAAAACGGATCTACCGTTTTTTGA 120 consensus_6578#1 TACACACAGCCAAACCAAGTATCATTGCTACAAAATGCCGAAAGTGCGTGCAGAAAAGAA 81 consensus_6578#3 ------------------------------------------------------------ consensus_6578#2 TACACACAGCCAAACCAAGTATCATTGCTACAAAATGCCGAAAGTGCGTGCAGAAAAGAA 104 consensus_6578#0 CATCTGCGTCGCTAACATGCCGTACCAGATCAGTTCACCGTTCGT-CTTTTACATGGGCA 179 consensus_6578#1 ATCCCGTGTACATGATGGAGTTGCAAAACAGGGCATCGTGTTCAACAAAGATTT-CGGTC 140 consensus_6578#3 ----------------------------------------------------TC-CCCCG 7 consensus_6578#2 ATCCCGTGTACATGATGGAGTTGCAAAACAGGGCATCGTGTTCAACAAAGATTT-CGGCC 163 consensus_6578#0 CCCTAGCTTGCTTACATACNTAGATGGGGACGACCCCCCGTTTTATAATAATACACTGAC 239 * consensus_6578#1 AACACATCCTCAAAAACCCGCTCGTCATCACCTCGATGCTGGAAAAGGCGGCATTGCGGC 200 consensus_6578#3 AGGTTATCCTCAAAAACC-GCTCGTCATCACCTCGATGCTGGAAAAGGCGGCATTGCGGC 66 consensus_6578#2 AACACATCCTCAAAAACCCACTCGTCATCACCTCGATGCTGGAAAAGGCGGCATTGCGGC 223 consensus_6578#0 AGTTTGTCCTGGCCCTTTGGATTGCC--CATTTTGGGGC--GAACCTTTGGGTTNTTACC 295 * **** * * * ** * * ** *** ** * * consensus_6578#1 CCACGGATGTTGTGCTCGAAATTGGTCCCGGTACCGGTAACATGACCGTG----AAGATA 256 consensus_6578#3 CTACGGATGTGGTGCTCGAAATTGGTCCCGGTACCGGTAACATGACCGTG----AAGATA 122 consensus_6578#2 CCACGGATGTTGTGCTCGAAATTGGTCCCGGTACCGGTAACATGACCGTG----AAGATA 279 consensus_6578#0 CGCCNAAAGGGGCCCTGGGAANGGCGAACAGGATTTNTATTAGGGCCGCCCTCCAAAAAC 355 * * * * * ** * ** * * * * ** * * *** ** * consensus_6578#1 CTGGAAAAGGTAAA---GAAAGTGGTTGCCTGCGA---AATTGATACGCGTCTCGTGGCC 310 consensus_6578#3 CTGGAAAAGGTAAA---GAAAGTGGTTGCATGCGA---AATTGATACACGTCTCGTGGCC 176 consensus_6578#2 CTGGAAAAGGTAAA---GAAAGTGGTTGCCTGCGA---AATTGATACGCGTCTCGTGGCC 333 consensus_6578#0 CTGAGAGNTACTAATGCAGGAGTGATNGNGTGTGCCCCGACTAAAAGTCCCCNGGTGGAC 415 *** * ** **** * * ** * * * * * * * **** * consensus_6578#1 GA-GCTGCAGAAGCGCGTGCAGGGT---ACGCATATGCAGCCGAAG-CTGC-AAATCCTG 364 consensus_6578#3 GA-GCTGCAGAAGCGCGTTCAGGGT---ACGCATATGCAGCCGAAG-CTGC-AAATTCTG 230 consensus_6578#2 GA-GCTGCAGAAGCGCGTGCAGGGT---ACGCATATGCAGCCGAAG-CTGC-AAATCCTG 387 consensus_6578#0 GGTGCCGGAGAAATGGTTCAAAAATGTCNCCCTCTTGGGGTTTAAGACCGCTAGGTGATT 475 * ** * **** * * * * * * ** * *** * ** * * * consensus_6578#1 ATTGGTGATGTGC----TGAAAACGGATCTACC---GTTTTTTGACATCTGCGTCGCTAA 417 consensus_6578#3 ATCGGTGATGTGC----TGAAAACGGATCTACC---GTTTTTTGACATCTGCGTCGCTAA 283 consensus_6578#2 ATTGGTGATGTGC----TGAAAACGGATCTACC---GTTTTTTGACATCTGCGTCGCTAA 440 consensus_6578#0 CCCTGGAGTGNGNCCCCTTCAAATAAGTGCGCCCAAACTTTCCCGAAAGAAAGCCGCGAA 535 * ** * * *** * ** *** * * *** ** consensus_6578#1 CATGCCGTACCAGATCAGTTCACCGTTCGTCTTTAAGCTGCTGCTTCATCGGCCCTTTTT 477 consensus_6578#3 CATGCCGTACCAGATCAGTTCACCGTTCGTCTTTAAGCTGCTGCTTCATCGGCCCTTTTT 343 consensus_6578#2 CATGCCGTACCAGATCAGTTCACCGTTCGTCTTTAAGCTGCTGCTTCATCGGCCCTTTTT 500 consensus_6578#0 GCCGCCTACCCAATGTGCACCCNTATTGGTCACCGATTTGTGNGTGGACCCACCCCCCCC 595 *** *** * ** *** * ** * * * *** consensus_6578#1 CCG---------CTGCGCTGTGCTGATGTTCCAG---CGAGAGTTTGC-CCAACGTTTGG 524 consensus_6578#3 CCG---------CTGCGCTGTGCTGATGTTCCAG---CGAGAGTTTGC-CCAACGTTTGG 390 consensus_6578#2 CCG---------CTGCGCTGTGCTGATGTTCCAGG--CGTGAGTTCGCGCCAACGTTTGG 549 consensus_6578#0 TGGGCCAGGGGATTTCCCNGCACAAACGTTTCAACACTTTTTGGGCGCCCCCACGTTTNT 655 * * * * * * * *** ** * ** ** ****** consensus_6578#1 TGGCCAAACCGGGCGATAAGCTGTACTGTCGGCTAAGCATCAACACCCAGCTGCTTGCCC 584 consensus_6578#3 TGGCCAAACCGGGCGATAAGCTGTACTGTCGGCTAAGCATCAACACCCAGCTGCTTGCCC 450 consensus_6578#2 TGGCCAAACCGGGCGATAAGCTGTA----------------------------------- 574 consensus_6578#0 GGGGGGCGCACAACCATTTTTTTGGNNGTCGACACANAACGCACAACAGGGTGGGGGGGA 715 ** * * ** * consensus_6578#1 GCGTCGATATGCTG--ATGAAGGTGGGGAAGAACAACTTCAAACCCCCGCCGAAGGTGGA 642 consensus_6578#3 GCGTCGATATGCTG--ATGAAGGTGGGGAAGAACAACTTCAAACCCC-GCCGAAGGTGGA 507 consensus_6578#2 ------------------------------------------------------------ consensus_6578#0 ATTTTGTGAGGGTGTGGTGCTGGTGCAAAACACAAACATNTGGTGTACAAAANAANNCAC 775 consensus_6578#1 GTCGAGCGTGGTAAGAATAGAGCCGCGA-------------------------------- 670 consensus_6578#3 GTCGAG------------------------------------------------------ 513 consensus_6578#2 ------------------------------------------------------------ consensus_6578#0 CGCGAATAACAACNGAGCTTTGTTGCCCCCTNGAGTAAAGTATAAATGNCGCCCCTACCC 835 consensus_6578#1 ------------------------------------------------------------ consensus_6578#3 ------------------------------------------------------------ consensus_6578#2 ------------------------------------------------------------ consensus_6578#0 CAGCCCCGGACACTGAACAAGTNGGACTGCGCAAAGGGCTCCGCAAGCCGGCNTGTGGAT 895 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||