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Anopheles gambiae
cluster # 6589 cluster # 6589       Sequences # 5       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6589#0 length = 997 sequences # 1  
consensus_6589#1 length = 642 sequences # 3  
consensus_6589#2 length = 503 sequences # 1  

consensusID : consensus_6589#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 997
fasta sequence
                              [AGCAGATCCCCGAGGTTATGTGCATTCTTGTGCAAGGGAACACTTCCGAGTCTAACTTCTTACGTCGTGAACTTTTCGCATTCCAAAATGAGAGCAATCTTCGTCCTGCTTTCCGTACTGGCCATGGTGCTGCTTGCAAGTGCTGCAAAGNGTCCAGCAGAGTGGCCGAAATCTGGTAGTTTCGCAAATCCGCGGCCGTCCAGGACAGACTGGCACGCTTAGCTTCCGTGATGCAGCACAGCTTGAAGAACGTTGGCCCATCACTCAGGCCTTCACTAAACGCGGACTGTAAACAAATCCCTTCCAGCAAGGACTATCCCTTAACAGTGACGGACTGGACGGACAGGACGAGTCTTCCGGGAACNATAAACTCCGCGTACTTTCTACCCGGGAGAACAAACGGGAACGCGGAATTGAANTGCCAAATCGAGACGACAACACTAACCGCCTTTGNCCCAAGGCCNAGAATANAATAGGGATAGGGTTATCCACATAAAACGGTTTGCAACCCACATTCTNGNAGCCACAGGCCATTTTCTATGGGAAGATCTAGGCAGGTNCAACNACCCTAGCTGGCAAAGCATTCCTATANACCACAGNTAATTGAACATACCTACCACAATAGAAAATAACCACGAGGTTCCCNACATCCCACTAGGGCCGACACGGCTTANAAGACTTACNACTCCACTTCACTTACCAAAANACACAAAGAACATAATCCCCCACACTTATGTCTAACAAACCACTACCTATCCCCAATTACAAACCCCGACAAAATTCAAACACCTCCTCTCATATGNAATCACACATCTAAANNNACCAGNCNACCCNCNTTCANACCAANATACTACACTACCACACACACTATGAAGAACTACCCCTTCCAACCATCCATAAACACCCAACAACAGATACAATAATAGTCNAAAAACAAAAACAACACCAAAACAACACACCAAAAAANCAACAACATTACACTACCAACCCACACANA]

[+] EMBL AL695499             [AGCAGATCCCCGAGGTTATGTGCATTCTTGTGCAAGGGAACACTTCCGAGTCTAACTTCTTACGTCGTGAACTTTTCGCATTCCAAAATGAGAGCAATCTTCGTCCTGCTTTCCGTACTGGCCATGGTGCTGCTTGCAAGTGCTGCAAAGNGTCCAGCAGAGTGGCCGAAATCTGGTAGTTTCGCAAATCCGCGGCCGTCCAGGACAGACTGGCACGCTTAGCTTCCGTGATGCAGCACAGCTTGAAGAACGTTGGCCCATCACTCAGGCCTTCACTAAACGCGGACTGTAAACAAATCCCTTCCAGCAAGGACTATCCCTTAACAGTGACGGACTGGACGGACAGGACGAGTCTTCCGGGAACNATAAACTCCGCGTACTTTCTACCCGGGAGAACAAACGGGAACGCGGAATTGAANTGCCAAATCGAGACGACAACACTAACCGCCTTTGNCCCAAGGCCNAGAATANAATAGGGATAGGGTTATCCACATAAAACGGTTTGCAACCCACATTCTNGNAGCCACAGGCCATTTTCTATGGGAAGATCTAGGCAGGTNCAACNACCCTAGCTGGCAAAGCATTCCTATANACCACAGNTAATTGAACATACCTACCACAATAGAAAATAACCACGAGGTTCCCNACATCCCACTAGGGCCGACACGGCTTANAAGACTTACNACTCCACTTCACTTACCAAAANACACAAAGAACATAATCCCCCACACTTATGTCTAACAAACCACTACCTATCCCCAATTACAAACCCCGACAAAATTCAAACACCTCCTCTCATATGNAATCACACATCTAAANNNACCAGNCNACCCNCNTTCANACCAANATACTACACTACCACACACACTATGAAGAACTACCCCTTCCAACCATCCATAAACACCCAACAACAGATACAATAATAGTCNAAAAACAAAAACAACACCAAAACAACACACCAAAAAANCAACAACATTACACTACCAACCCACACANA]


>consensus_6589#0 AGCAGATCCCCGAGGTTATGTGCATTCTTGTGCAAGGGAACACTTCCGAGTCTAACTTCT TACGTCGTGAACTTTTCGCATTCCAAAATGAGAGCAATCTTCGTCCTGCTTTCCGTACTG GCCATGGTGCTGCTTGCAAGTGCTGCAAAGNGTCCAGCAGAGTGGCCGAAATCTGGTAGT TTCGCAAATCCGCGGCCGTCCAGGACAGACTGGCACGCTTAGCTTCCGTGATGCAGCACA GCTTGAAGAACGTTGGCCCATCACTCAGGCCTTCACTAAACGCGGACTGTAAACAAATCC CTTCCAGCAAGGACTATCCCTTAACAGTGACGGACTGGACGGACAGGACGAGTCTTCCGG GAACNATAAACTCCGCGTACTTTCTACCCGGGAGAACAAACGGGAACGCGGAATTGAANT GCCAAATCGAGACGACAACACTAACCGCCTTTGNCCCAAGGCCNAGAATANAATAGGGAT AGGGTTATCCACATAAAACGGTTTGCAACCCACATTCTNGNAGCCACAGGCCATTTTCTA TGGGAAGATCTAGGCAGGTNCAACNACCCTAGCTGGCAAAGCATTCCTATANACCACAGN TAATTGAACATACCTACCACAATAGAAAATAACCACGAGGTTCCCNACATCCCACTAGGG CCGACACGGCTTANAAGACTTACNACTCCACTTCACTTACCAAAANACACAAAGAACATA ATCCCCCACACTTATGTCTAACAAACCACTACCTATCCCCAATTACAAACCCCGACAAAA TTCAAACACCTCCTCTCATATGNAATCACACATCTAAANNNACCAGNCNACCCNCNTTCA NACCAANATACTACACTACCACACACACTATGAAGAACTACCCCTTCCAACCATCCATAA ACACCCAACAACAGATACAATAATAGTCNAAAAACAAAAACAACACCAAAACAACACACC AAAAAANCAACAACATTACACTACCAACCCACACANA



consensusID : consensus_6589#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 642
fasta sequence
                              [GAACTTCTTACGTCGTGAACTTTTCGCATTCCAAAATGAGAGCAATCTTCGTCCTGCTTTCCGTACTGGCCATGGTGCTGCTTGCAAGTGCTGCAAAGGTCCAGCAGAGTGGCCGAAATCTGGTAGTTTCGCAAATCCGCGGCCGTCCAGGACAGACTGCCACGCTTAGCTTCCGTGATGCAGCCACAGCCTTGAAGAACGTTGGCCCCATCACTC-AGGCCTTCACTAAACGCGGACTGTAAACAACATCCCTTCCAGCAAGGACTATCCCTTAACAGGACGGACTGGACGGACAGGACGAGTCTTCCGGGAACATAAACTCCGTACTTTCTCCCGGGAGAACAAACGGGAACGCGGAATGAATGCAATCGAGAGAAAATACGCTTGCCAGGCAGATTTTTGTTTGGTTTCAATAAAAGTTTGCACCATCTGACAAGCATTTTCATGGAAGTTTGTGTTTTTCTGTGCAGTTCTTTTACAAGTCTGATTTTTTTATGAATTCGTGTCGTCAGGCGAGGTTAAGATAAATCATATTAAAAAGATTCAAATGTAAAACTCTCCTCAGCCGTTATGAAGACTTTGGTTATTAAAGGNACATTGAATTCAATCACTTGGATCCTTCAATAAACCAACGTTGTATGT]

[+] EMBL BX623988             [GAACTTCTTACGTCGTGAACTTTTCGCATTCCAAAATGAGAGCAATCTTCGTCCTGCTTTCCGTACTGGCCATGGTGCTGCTTGCAAGTGCTGCAAAGGTCCAGCAGAGTGGCCGAAATCTGGTAGTTTCGCAAATCCGCGGCCGTCCAGGACAGACTGCCACGCTTAGCTTCCGTGATGCAGCCACAGCCTTGAAGAACGTTGGCCCCATCACTC AGGCCTTCACTAAACGCGGACTGTAAACAACATCCCTTCCAGCAAGGACTATCCCTTAACAGGACGGACTGGACGGACAGGACGAGTCTTCCGGGAACATAAACTCCGTACTTTCTCCCGGGAGAACAAACGGGAACGCGGAATGAATGCAATCGAGAGAAAATCCGCTTGGCAGGCAGATTTTTGTTTGGTTTCAATAAAAGTTTGCACCATCTGACAAGCATTTTCATGGAAGTTTGTGTTTTTCTGTGCAGTTTTTTTGCAAGTCTGATTTTTTTATGAATTCGTGTCGTCAGGCGAGGTTAAGATAAATCATATTAAAAAGATTCAAATGTAAAACTCTCCTCAGCCGTTATGAAGACTTTGGTTATTAAAGGNACATTGAATTCAATCACTTGGATCCTTCAATAAACCAACGTTGTAT  ]
[+] EMBL BX623590             [         ACGTCGTGAACTTTTCGCATTCCAAAATGAGAGCAATCTTCGTCCTGCTTTCCGTACTGGCCATGGTGCTGCTTGCAAGTGCTGCAAAGGTCCAGCAGAGTGGCCGAAATCTGGTAGTTTCGCAAATCCGCGGCCGTCCAGGACAGACTGCCACGCTTAGCTTCCGTGATGCAGCCACAGCCTTGAAGAACGTTGGCCCCATCACTC AGGCCTTCACTAAACGCGGACTGTAAACAACATCCCTTCCAGCAAGGACTATCCCTTAACAGGACGGACTGGACGGACAGGACGAGTCTTCCGGGAACATAAACTCCGTACTTTCTCCCGGGAGAACAAACGGGAACGCGGAATGAATGCAATCGAGAGAAAATACGCTTGCCAGGCAGATTTTTGTTTGGTTTCAATAAAAGTTTGCACCATCTGACAAGCATTTTCATGGAAGTTTGTGTTTTTCTGTGCAGTTCTTTTACAAGTATGATTTTTTTATGAATTCGTGTCGTCAGGCGAGGTTAAGATAAATCATATCAAAAAGATTCAAATGTAAAACTCTCCTCAGCCGTTATGAAGTCTTTGGTCATTAAAGGTACATTGAATTCAATCACTTGGATCCTTCAATAAACCAACGTTGTATGT]
[+] EMBL BX620427             [                                                        CTTTCCGTACTGGCCATGGTGCTGCTTGCAAGTGCTGCAAAGGTCCAGCAGAGTGGNCGAAATCTGGTAGTTTCNCAAATCCGCGGNCGGCCAGGACAGACTGCCACGCTTAGCTTCCGTGATGCAGCCACAGCCTTGAANAACGTTGGCCCCATCACTCAANGCCTTCACTAAACGCGGACTGTAAACAACATCCCTTCCAGCAAGGACTATCCCTTAACANGACGGACTGGACGGACAGGACGAGTCTTCCGGGAACATAAACTCCGNACTTTCTCCCGGGAGAACAAACGGGAACGCGGAATGAATGCAATCGAGAGAAAATACGCTTGCCAGGCAGATTTTTGTTTGGTTTCAATAAAAGTTTGCACCATCTGACNAGCATTTTCATGGAAGTTTGTGTNTTTCTGTGCAGTTCTTTNACAAGT                                                                                                                                                               ]


>consensus_6589#1 GAACTTCTTACGTCGTGAACTTTTCGCATTCCAAAATGAGAGCAATCTTCGTCCTGCTTT CCGTACTGGCCATGGTGCTGCTTGCAAGTGCTGCAAAGGTCCAGCAGAGTGGCCGAAATC TGGTAGTTTCGCAAATCCGCGGCCGTCCAGGACAGACTGCCACGCTTAGCTTCCGTGATG CAGCCACAGCCTTGAAGAACGTTGGCCCCATCACTCAGGCCTTCACTAAACGCGGACTGT AAACAACATCCCTTCCAGCAAGGACTATCCCTTAACAGGACGGACTGGACGGACAGGACG AGTCTTCCGGGAACATAAACTCCGTACTTTCTCCCGGGAGAACAAACGGGAACGCGGAAT GAATGCAATCGAGAGAAAATACGCTTGCCAGGCAGATTTTTGTTTGGTTTCAATAAAAGT TTGCACCATCTGACAAGCATTTTCATGGAAGTTTGTGTTTTTCTGTGCAGTTCTTTTACA AGTCTGATTTTTTTATGAATTCGTGTCGTCAGGCGAGGTTAAGATAAATCATATTAAAAA GATTCAAATGTAAAACTCTCCTCAGCCGTTATGAAGACTTTGGTTATTAAAGGNACATTG AATTCAATCACTTGGATCCTTCAATAAACCAACGTTGTATGT



consensusID : consensus_6589#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 503
fasta sequence
                              [GATCCCACGATTAACTGTGCATTCTTGTGCCAAGGAACACTTCCGAGTCGAACTTCTTACGTCGTGAACTTTTCGCATTCCAAAATGAGAGCAATCTTCGTCCTGCTTTCCGTACTGGCCATGGTGCTGCTTGCAAGTGCTGCAAAGGTCCAGCAGAGTGGCCGAAATCTGGTAGTTTCGCAAATCCGCGGCCGTCCAGGACAGACTGCCACGCTTAGCTTCCGTGATGCAGCCACAGCCTTGAAGAACGTTGGCCCATCACTCAGGCCTTCACTAAACGCGGACTGTAAACAACATCCCTTCCAGCAAGGACTATCCCTTAACAGGACGGACTGGACGGACAGGACGAGTCTTCCGGGAACATAAACTCCGTACTTTCTCCCGGGAGAACAAACGGGAACGCGGAATGAATGCAAAACACACAAAAAACACACAACACACAAAAAAACAACACCCAACAACCCCACACCACAACACCAGCGCCATGGTNTGCGGACCGCAAG]

[+] EMBL AL713812             [GATCCCACGATTAACTGTGCATTCTTGTGCCAAGGAACACTTCCGAGTCGAACTTCTTACGTCGTGAACTTTTCGCATTCCAAAATGAGAGCAATCTTCGTCCTGCTTTCCGTACTGGCCATGGTGCTGCTTGCAAGTGCTGCAAAGGTCCAGCAGAGTGGCCGAAATCTGGTAGTTTCGCAAATCCGCGGCCGTCCAGGACAGACTGCCACGCTTAGCTTCCGTGATGCAGCCACAGCCTTGAAGAACGTTGGCCCATCACTCAGGCCTTCACTAAACGCGGACTGTAAACAACATCCCTTCCAGCAAGGACTATCCCTTAACAGGACGGACTGGACGGACAGGACGAGTCTTCCGGGAACATAAACTCCGTACTTTCTCCCGGGAGAACAAACGGGAACGCGGAATGAATGCAAAACACACAAAAAACACACAACACACAAAAAAACAACACCCAACAACCCCACACCACAACACCAGCGCCATGGTNTGCGGACCGCAAG]


>consensus_6589#2 GATCCCACGATTAACTGTGCATTCTTGTGCCAAGGAACACTTCCGAGTCGAACTTCTTAC GTCGTGAACTTTTCGCATTCCAAAATGAGAGCAATCTTCGTCCTGCTTTCCGTACTGGCC ATGGTGCTGCTTGCAAGTGCTGCAAAGGTCCAGCAGAGTGGCCGAAATCTGGTAGTTTCG CAAATCCGCGGCCGTCCAGGACAGACTGCCACGCTTAGCTTCCGTGATGCAGCCACAGCC TTGAAGAACGTTGGCCCATCACTCAGGCCTTCACTAAACGCGGACTGTAAACAACATCCC TTCCAGCAAGGACTATCCCTTAACAGGACGGACTGGACGGACAGGACGAGTCTTCCGGGA ACATAAACTCCGTACTTTCTCCCGGGAGAACAAACGGGAACGCGGAATGAATGCAAAACA CACAAAAAACACACAACACACAAAAAAACAACACCCAACAACCCCACACCACAACACCAG CGCCATGGTNTGCGGACCGCAAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6589#0      AGCAGATCCCCGAGGTTA-TGTGCATTCTTGTGCAAGGGAACACTTCCGAGTCTAACTTC 59
consensus_6589#2      ----GATCCCACGATTAACTGTGCATTCTTGTGCCAAGGAACACTTCCGAGTCGAACTTC 56
consensus_6589#1      -----------------------------------------------------GAACTTC 7
                                                                            ******

consensus_6589#0      TTACGTCGTGAACTTTTCGCATTCCAAAATGAGAGCAATCTTCGTCCTGCTTTCCGTACT 119
consensus_6589#2      TTACGTCGTGAACTTTTCGCATTCCAAAATGAGAGCAATCTTCGTCCTGCTTTCCGTACT 116
consensus_6589#1      TTACGTCGTGAACTTTTCGCATTCCAAAATGAGAGCAATCTTCGTCCTGCTTTCCGTACT 67
                      ************************************************************

consensus_6589#0      GGCCATGGTGCTGCTTGCAAGTGCTGCAAAGNGTCCAGCAGAGTGGCCGAAATCTGGTAG 179
consensus_6589#2      GGCCATGGTGCTGCTTGCAAGTGCTGCAAAGG-TCCAGCAGAGTGGCCGAAATCTGGTAG 175
consensus_6589#1      GGCCATGGTGCTGCTTGCAAGTGCTGCAAAGG-TCCAGCAGAGTGGCCGAAATCTGGTAG 126
                      *******************************  ***************************

consensus_6589#0      TTTCGCAAATCCGCGGCCGTCCAGGACAGACTGGCACGCTTAGCTTCCGTGATGCAGC-A 238
consensus_6589#2      TTTCGCAAATCCGCGGCCGTCCAGGACAGACTGCCACGCTTAGCTTCCGTGATGCAGCCA 235
consensus_6589#1      TTTCGCAAATCCGCGGCCGTCCAGGACAGACTGCCACGCTTAGCTTCCGTGATGCAGCCA 186
                      ********************************* ************************ *

consensus_6589#0      CAGC-TTGAAGAACGTTGGCCC-ATCACTCAGGCCTTCACTAAACGCGGACTGTAAACAA 296
consensus_6589#2      CAGCCTTGAAGAACGTTGGCCC-ATCACTCAGGCCTTCACTAAACGCGGACTGTAAACAA 294
consensus_6589#1      CAGCCTTGAAGAACGTTGGCCCCATCACTCAGGCCTTCACTAAACGCGGACTGTAAACAA 246
                      **** ***************** *************************************

consensus_6589#0      -ATCCCTTCCAGCAAGGACTATCCCTTAACAGTGACGGACTGGACGGACAGGACGAGTCT 355
consensus_6589#2      CATCCCTTCCAGCAAGGACTATCCCTTAACAG-GACGGACTGGACGGACAGGACGAGTCT 353
consensus_6589#1      CATCCCTTCCAGCAAGGACTATCCCTTAACAG-GACGGACTGGACGGACAGGACGAGTCT 305
                       ******************************* ***************************

consensus_6589#0      TCCGGGAACNATAAACTCCGCGTACTTTCTACCCGGGAGAACAAACGGGAACGCGGAATT 415
consensus_6589#2      TCCGGGAACA-TAAACTCC--GTACTTTCT-CCCGGGAGAACAAACGGGAACGCGGAAT- 408
consensus_6589#1      TCCGGGAACA-TAAACTCC--GTACTTTCT-CCCGGGAGAACAAACGGGAACGCGGAAT- 360
                      *********  ********  ********* **************************** 

consensus_6589#0      GAANTGCCAAATCGAGACGACAACACTAACCGCCTTTGNCCCAAGGCCNAGAATANAATA 475
consensus_6589#2      -GAATGCAAAAC----------ACACAAAAAACACACAACACA----CAAAAAAACAACA 453
consensus_6589#1      -GAATGC--AATCG--------AGAGAAAATACGCTTGCCAGG-----CAGATTTTTGTT 404
                        * ***  **           * *  **   *      *         * *        

consensus_6589#0      GGGATAGGGTTATCCACATAAAACGGTTTGCAACCCACATTCTNGNAGCCACAGGCCATT 535
consensus_6589#2      CCCAA-----CAACCCCACACCACAACACCAGCGCCATGGTNTGCGGACCGCAAG----- 503
consensus_6589#1      TGGTT----TCAATAAAAGTTTGCACCATCTGACAAGCATTTTCATGGAAGTTTGTGTTT 460
                                 *     *     *                * *           *     

consensus_6589#0      TTCTATGGGAAGATCTAGGCAGGTNCAACNACCCTAGCTGGCAAAGCATTCCTATANACC 595
consensus_6589#2      ------------------------------------------------------------
consensus_6589#1      TTCTGTGC-AGTTCTTTTACAAGTCTGATTTTTTTAT--------GAATTCGTGT-CGTC 510
                                                                                  

consensus_6589#0      ACAGNTAATTGAACATACCTACCACAATAGAAAATAACCACGAGGTTCCCNACATCCCAC 655
consensus_6589#2      ------------------------------------------------------------
consensus_6589#1      AGGCGAGGTTAAGATAAATCATATTAAAAAGATTCAAATGTAAAACTCTCCTCAGCC-GT 569
                                                                                  

consensus_6589#0      TAGGGCCGACACGGCTTANAAGACTTACNACTCCACTTCACTTACCAAAANACACAAAGA 715
consensus_6589#2      ------------------------------------------------------------
consensus_6589#1      TATGAA-GACTTTGGTTATTAAAGGNACA--TTGAATTCAATCACTTGGATCCTTCAATA 626
                                                                                  

consensus_6589#0      ACATAATCCCCCACACTTATGTCTAACAAACCACTACCTATCCCCAATTACAAACCCCGA 775
consensus_6589#2      ------------------------------------------------------------
consensus_6589#1      AACCAACGTTGTATGT-------------------------------------------- 642
                                                                                  

consensus_6589#0      CAAAATTCAAACACCTCCTCTCATATGNAATCACACATCTAAANNNACCAGNCNACCCNC 835
consensus_6589#2      ------------------------------------------------------------
consensus_6589#1      ------------------------------------------------------------
                                                                                  

consensus_6589#0      NTTCANACCAANATACTACACTACCACACACACTATGAAGAACTACCCCTTCCAACCATC 895
consensus_6589#2      ------------------------------------------------------------
consensus_6589#1      ------------------------------------------------------------
                                                                                  

consensus_6589#0      CATAAACACCCAACAACAGATACAATAATAGTCNAAAAACAAAAACAACACCAAAACAAC 955
consensus_6589#2      ------------------------------------------------------------
consensus_6589#1      ------------------------------------------------------------
                                                                                  

consensus_6589#0      ACACCAAAAAANCAACAACATTACACTACCAACCCACACANA 997
consensus_6589#2      ------------------------------------------
consensus_6589#1      ------------------------------------------
                                                                




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)