These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6589#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 997 fasta sequence [AGCAGATCCCCGAGGTTATGTGCATTCTTGTGCAAGGGAACACTTCCGAGTCTAACTTCTTACGTCGTGAACTTTTCGCATTCCAAAATGAGAGCAATCTTCGTCCTGCTTTCCGTACTGGCCATGGTGCTGCTTGCAAGTGCTGCAAAGNGTCCAGCAGAGTGGCCGAAATCTGGTAGTTTCGCAAATCCGCGGCCGTCCAGGACAGACTGGCACGCTTAGCTTCCGTGATGCAGCACAGCTTGAAGAACGTTGGCCCATCACTCAGGCCTTCACTAAACGCGGACTGTAAACAAATCCCTTCCAGCAAGGACTATCCCTTAACAGTGACGGACTGGACGGACAGGACGAGTCTTCCGGGAACNATAAACTCCGCGTACTTTCTACCCGGGAGAACAAACGGGAACGCGGAATTGAANTGCCAAATCGAGACGACAACACTAACCGCCTTTGNCCCAAGGCCNAGAATANAATAGGGATAGGGTTATCCACATAAAACGGTTTGCAACCCACATTCTNGNAGCCACAGGCCATTTTCTATGGGAAGATCTAGGCAGGTNCAACNACCCTAGCTGGCAAAGCATTCCTATANACCACAGNTAATTGAACATACCTACCACAATAGAAAATAACCACGAGGTTCCCNACATCCCACTAGGGCCGACACGGCTTANAAGACTTACNACTCCACTTCACTTACCAAAANACACAAAGAACATAATCCCCCACACTTATGTCTAACAAACCACTACCTATCCCCAATTACAAACCCCGACAAAATTCAAACACCTCCTCTCATATGNAATCACACATCTAAANNNACCAGNCNACCCNCNTTCANACCAANATACTACACTACCACACACACTATGAAGAACTACCCCTTCCAACCATCCATAAACACCCAACAACAGATACAATAATAGTCNAAAAACAAAAACAACACCAAAACAACACACCAAAAAANCAACAACATTACACTACCAACCCACACANA] [+] EMBL AL695499 [AGCAGATCCCCGAGGTTATGTGCATTCTTGTGCAAGGGAACACTTCCGAGTCTAACTTCTTACGTCGTGAACTTTTCGCATTCCAAAATGAGAGCAATCTTCGTCCTGCTTTCCGTACTGGCCATGGTGCTGCTTGCAAGTGCTGCAAAGNGTCCAGCAGAGTGGCCGAAATCTGGTAGTTTCGCAAATCCGCGGCCGTCCAGGACAGACTGGCACGCTTAGCTTCCGTGATGCAGCACAGCTTGAAGAACGTTGGCCCATCACTCAGGCCTTCACTAAACGCGGACTGTAAACAAATCCCTTCCAGCAAGGACTATCCCTTAACAGTGACGGACTGGACGGACAGGACGAGTCTTCCGGGAACNATAAACTCCGCGTACTTTCTACCCGGGAGAACAAACGGGAACGCGGAATTGAANTGCCAAATCGAGACGACAACACTAACCGCCTTTGNCCCAAGGCCNAGAATANAATAGGGATAGGGTTATCCACATAAAACGGTTTGCAACCCACATTCTNGNAGCCACAGGCCATTTTCTATGGGAAGATCTAGGCAGGTNCAACNACCCTAGCTGGCAAAGCATTCCTATANACCACAGNTAATTGAACATACCTACCACAATAGAAAATAACCACGAGGTTCCCNACATCCCACTAGGGCCGACACGGCTTANAAGACTTACNACTCCACTTCACTTACCAAAANACACAAAGAACATAATCCCCCACACTTATGTCTAACAAACCACTACCTATCCCCAATTACAAACCCCGACAAAATTCAAACACCTCCTCTCATATGNAATCACACATCTAAANNNACCAGNCNACCCNCNTTCANACCAANATACTACACTACCACACACACTATGAAGAACTACCCCTTCCAACCATCCATAAACACCCAACAACAGATACAATAATAGTCNAAAAACAAAAACAACACCAAAACAACACACCAAAAAANCAACAACATTACACTACCAACCCACACANA] consensusID : consensus_6589#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 642 fasta sequence [GAACTTCTTACGTCGTGAACTTTTCGCATTCCAAAATGAGAGCAATCTTCGTCCTGCTTTCCGTACTGGCCATGGTGCTGCTTGCAAGTGCTGCAAAGGTCCAGCAGAGTGGCCGAAATCTGGTAGTTTCGCAAATCCGCGGCCGTCCAGGACAGACTGCCACGCTTAGCTTCCGTGATGCAGCCACAGCCTTGAAGAACGTTGGCCCCATCACTC-AGGCCTTCACTAAACGCGGACTGTAAACAACATCCCTTCCAGCAAGGACTATCCCTTAACAGGACGGACTGGACGGACAGGACGAGTCTTCCGGGAACATAAACTCCGTACTTTCTCCCGGGAGAACAAACGGGAACGCGGAATGAATGCAATCGAGAGAAAATACGCTTGCCAGGCAGATTTTTGTTTGGTTTCAATAAAAGTTTGCACCATCTGACAAGCATTTTCATGGAAGTTTGTGTTTTTCTGTGCAGTTCTTTTACAAGTCTGATTTTTTTATGAATTCGTGTCGTCAGGCGAGGTTAAGATAAATCATATTAAAAAGATTCAAATGTAAAACTCTCCTCAGCCGTTATGAAGACTTTGGTTATTAAAGGNACATTGAATTCAATCACTTGGATCCTTCAATAAACCAACGTTGTATGT] [+] EMBL BX623988 [GAACTTCTTACGTCGTGAACTTTTCGCATTCCAAAATGAGAGCAATCTTCGTCCTGCTTTCCGTACTGGCCATGGTGCTGCTTGCAAGTGCTGCAAAGGTCCAGCAGAGTGGCCGAAATCTGGTAGTTTCGCAAATCCGCGGCCGTCCAGGACAGACTGCCACGCTTAGCTTCCGTGATGCAGCCACAGCCTTGAAGAACGTTGGCCCCATCACTC AGGCCTTCACTAAACGCGGACTGTAAACAACATCCCTTCCAGCAAGGACTATCCCTTAACAGGACGGACTGGACGGACAGGACGAGTCTTCCGGGAACATAAACTCCGTACTTTCTCCCGGGAGAACAAACGGGAACGCGGAATGAATGCAATCGAGAGAAAATCCGCTTGGCAGGCAGATTTTTGTTTGGTTTCAATAAAAGTTTGCACCATCTGACAAGCATTTTCATGGAAGTTTGTGTTTTTCTGTGCAGTTTTTTTGCAAGTCTGATTTTTTTATGAATTCGTGTCGTCAGGCGAGGTTAAGATAAATCATATTAAAAAGATTCAAATGTAAAACTCTCCTCAGCCGTTATGAAGACTTTGGTTATTAAAGGNACATTGAATTCAATCACTTGGATCCTTCAATAAACCAACGTTGTAT ] [+] EMBL BX623590 [ ACGTCGTGAACTTTTCGCATTCCAAAATGAGAGCAATCTTCGTCCTGCTTTCCGTACTGGCCATGGTGCTGCTTGCAAGTGCTGCAAAGGTCCAGCAGAGTGGCCGAAATCTGGTAGTTTCGCAAATCCGCGGCCGTCCAGGACAGACTGCCACGCTTAGCTTCCGTGATGCAGCCACAGCCTTGAAGAACGTTGGCCCCATCACTC AGGCCTTCACTAAACGCGGACTGTAAACAACATCCCTTCCAGCAAGGACTATCCCTTAACAGGACGGACTGGACGGACAGGACGAGTCTTCCGGGAACATAAACTCCGTACTTTCTCCCGGGAGAACAAACGGGAACGCGGAATGAATGCAATCGAGAGAAAATACGCTTGCCAGGCAGATTTTTGTTTGGTTTCAATAAAAGTTTGCACCATCTGACAAGCATTTTCATGGAAGTTTGTGTTTTTCTGTGCAGTTCTTTTACAAGTATGATTTTTTTATGAATTCGTGTCGTCAGGCGAGGTTAAGATAAATCATATCAAAAAGATTCAAATGTAAAACTCTCCTCAGCCGTTATGAAGTCTTTGGTCATTAAAGGTACATTGAATTCAATCACTTGGATCCTTCAATAAACCAACGTTGTATGT] [+] EMBL BX620427 [ CTTTCCGTACTGGCCATGGTGCTGCTTGCAAGTGCTGCAAAGGTCCAGCAGAGTGGNCGAAATCTGGTAGTTTCNCAAATCCGCGGNCGGCCAGGACAGACTGCCACGCTTAGCTTCCGTGATGCAGCCACAGCCTTGAANAACGTTGGCCCCATCACTCAANGCCTTCACTAAACGCGGACTGTAAACAACATCCCTTCCAGCAAGGACTATCCCTTAACANGACGGACTGGACGGACAGGACGAGTCTTCCGGGAACATAAACTCCGNACTTTCTCCCGGGAGAACAAACGGGAACGCGGAATGAATGCAATCGAGAGAAAATACGCTTGCCAGGCAGATTTTTGTTTGGTTTCAATAAAAGTTTGCACCATCTGACNAGCATTTTCATGGAAGTTTGTGTNTTTCTGTGCAGTTCTTTNACAAGT ] consensusID : consensus_6589#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 503 fasta sequence [GATCCCACGATTAACTGTGCATTCTTGTGCCAAGGAACACTTCCGAGTCGAACTTCTTACGTCGTGAACTTTTCGCATTCCAAAATGAGAGCAATCTTCGTCCTGCTTTCCGTACTGGCCATGGTGCTGCTTGCAAGTGCTGCAAAGGTCCAGCAGAGTGGCCGAAATCTGGTAGTTTCGCAAATCCGCGGCCGTCCAGGACAGACTGCCACGCTTAGCTTCCGTGATGCAGCCACAGCCTTGAAGAACGTTGGCCCATCACTCAGGCCTTCACTAAACGCGGACTGTAAACAACATCCCTTCCAGCAAGGACTATCCCTTAACAGGACGGACTGGACGGACAGGACGAGTCTTCCGGGAACATAAACTCCGTACTTTCTCCCGGGAGAACAAACGGGAACGCGGAATGAATGCAAAACACACAAAAAACACACAACACACAAAAAAACAACACCCAACAACCCCACACCACAACACCAGCGCCATGGTNTGCGGACCGCAAG] [+] EMBL AL713812 [GATCCCACGATTAACTGTGCATTCTTGTGCCAAGGAACACTTCCGAGTCGAACTTCTTACGTCGTGAACTTTTCGCATTCCAAAATGAGAGCAATCTTCGTCCTGCTTTCCGTACTGGCCATGGTGCTGCTTGCAAGTGCTGCAAAGGTCCAGCAGAGTGGCCGAAATCTGGTAGTTTCGCAAATCCGCGGCCGTCCAGGACAGACTGCCACGCTTAGCTTCCGTGATGCAGCCACAGCCTTGAAGAACGTTGGCCCATCACTCAGGCCTTCACTAAACGCGGACTGTAAACAACATCCCTTCCAGCAAGGACTATCCCTTAACAGGACGGACTGGACGGACAGGACGAGTCTTCCGGGAACATAAACTCCGTACTTTCTCCCGGGAGAACAAACGGGAACGCGGAATGAATGCAAAACACACAAAAAACACACAACACACAAAAAAACAACACCCAACAACCCCACACCACAACACCAGCGCCATGGTNTGCGGACCGCAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6589#0 AGCAGATCCCCGAGGTTA-TGTGCATTCTTGTGCAAGGGAACACTTCCGAGTCTAACTTC 59 consensus_6589#2 ----GATCCCACGATTAACTGTGCATTCTTGTGCCAAGGAACACTTCCGAGTCGAACTTC 56 consensus_6589#1 -----------------------------------------------------GAACTTC 7 ****** consensus_6589#0 TTACGTCGTGAACTTTTCGCATTCCAAAATGAGAGCAATCTTCGTCCTGCTTTCCGTACT 119 consensus_6589#2 TTACGTCGTGAACTTTTCGCATTCCAAAATGAGAGCAATCTTCGTCCTGCTTTCCGTACT 116 consensus_6589#1 TTACGTCGTGAACTTTTCGCATTCCAAAATGAGAGCAATCTTCGTCCTGCTTTCCGTACT 67 ************************************************************ consensus_6589#0 GGCCATGGTGCTGCTTGCAAGTGCTGCAAAGNGTCCAGCAGAGTGGCCGAAATCTGGTAG 179 consensus_6589#2 GGCCATGGTGCTGCTTGCAAGTGCTGCAAAGG-TCCAGCAGAGTGGCCGAAATCTGGTAG 175 consensus_6589#1 GGCCATGGTGCTGCTTGCAAGTGCTGCAAAGG-TCCAGCAGAGTGGCCGAAATCTGGTAG 126 ******************************* *************************** consensus_6589#0 TTTCGCAAATCCGCGGCCGTCCAGGACAGACTGGCACGCTTAGCTTCCGTGATGCAGC-A 238 consensus_6589#2 TTTCGCAAATCCGCGGCCGTCCAGGACAGACTGCCACGCTTAGCTTCCGTGATGCAGCCA 235 consensus_6589#1 TTTCGCAAATCCGCGGCCGTCCAGGACAGACTGCCACGCTTAGCTTCCGTGATGCAGCCA 186 ********************************* ************************ * consensus_6589#0 CAGC-TTGAAGAACGTTGGCCC-ATCACTCAGGCCTTCACTAAACGCGGACTGTAAACAA 296 consensus_6589#2 CAGCCTTGAAGAACGTTGGCCC-ATCACTCAGGCCTTCACTAAACGCGGACTGTAAACAA 294 consensus_6589#1 CAGCCTTGAAGAACGTTGGCCCCATCACTCAGGCCTTCACTAAACGCGGACTGTAAACAA 246 **** ***************** ************************************* consensus_6589#0 -ATCCCTTCCAGCAAGGACTATCCCTTAACAGTGACGGACTGGACGGACAGGACGAGTCT 355 consensus_6589#2 CATCCCTTCCAGCAAGGACTATCCCTTAACAG-GACGGACTGGACGGACAGGACGAGTCT 353 consensus_6589#1 CATCCCTTCCAGCAAGGACTATCCCTTAACAG-GACGGACTGGACGGACAGGACGAGTCT 305 ******************************* *************************** consensus_6589#0 TCCGGGAACNATAAACTCCGCGTACTTTCTACCCGGGAGAACAAACGGGAACGCGGAATT 415 consensus_6589#2 TCCGGGAACA-TAAACTCC--GTACTTTCT-CCCGGGAGAACAAACGGGAACGCGGAAT- 408 consensus_6589#1 TCCGGGAACA-TAAACTCC--GTACTTTCT-CCCGGGAGAACAAACGGGAACGCGGAAT- 360 ********* ******** ********* **************************** consensus_6589#0 GAANTGCCAAATCGAGACGACAACACTAACCGCCTTTGNCCCAAGGCCNAGAATANAATA 475 consensus_6589#2 -GAATGCAAAAC----------ACACAAAAAACACACAACACA----CAAAAAAACAACA 453 consensus_6589#1 -GAATGC--AATCG--------AGAGAAAATACGCTTGCCAGG-----CAGATTTTTGTT 404 * *** ** * * ** * * * * consensus_6589#0 GGGATAGGGTTATCCACATAAAACGGTTTGCAACCCACATTCTNGNAGCCACAGGCCATT 535 consensus_6589#2 CCCAA-----CAACCCCACACCACAACACCAGCGCCATGGTNTGCGGACCGCAAG----- 503 consensus_6589#1 TGGTT----TCAATAAAAGTTTGCACCATCTGACAAGCATTTTCATGGAAGTTTGTGTTT 460 * * * * * * consensus_6589#0 TTCTATGGGAAGATCTAGGCAGGTNCAACNACCCTAGCTGGCAAAGCATTCCTATANACC 595 consensus_6589#2 ------------------------------------------------------------ consensus_6589#1 TTCTGTGC-AGTTCTTTTACAAGTCTGATTTTTTTAT--------GAATTCGTGT-CGTC 510 consensus_6589#0 ACAGNTAATTGAACATACCTACCACAATAGAAAATAACCACGAGGTTCCCNACATCCCAC 655 consensus_6589#2 ------------------------------------------------------------ consensus_6589#1 AGGCGAGGTTAAGATAAATCATATTAAAAAGATTCAAATGTAAAACTCTCCTCAGCC-GT 569 consensus_6589#0 TAGGGCCGACACGGCTTANAAGACTTACNACTCCACTTCACTTACCAAAANACACAAAGA 715 consensus_6589#2 ------------------------------------------------------------ consensus_6589#1 TATGAA-GACTTTGGTTATTAAAGGNACA--TTGAATTCAATCACTTGGATCCTTCAATA 626 consensus_6589#0 ACATAATCCCCCACACTTATGTCTAACAAACCACTACCTATCCCCAATTACAAACCCCGA 775 consensus_6589#2 ------------------------------------------------------------ consensus_6589#1 AACCAACGTTGTATGT-------------------------------------------- 642 consensus_6589#0 CAAAATTCAAACACCTCCTCTCATATGNAATCACACATCTAAANNNACCAGNCNACCCNC 835 consensus_6589#2 ------------------------------------------------------------ consensus_6589#1 ------------------------------------------------------------ consensus_6589#0 NTTCANACCAANATACTACACTACCACACACACTATGAAGAACTACCCCTTCCAACCATC 895 consensus_6589#2 ------------------------------------------------------------ consensus_6589#1 ------------------------------------------------------------ consensus_6589#0 CATAAACACCCAACAACAGATACAATAATAGTCNAAAAACAAAAACAACACCAAAACAAC 955 consensus_6589#2 ------------------------------------------------------------ consensus_6589#1 ------------------------------------------------------------ consensus_6589#0 ACACCAAAAAANCAACAACATTACACTACCAACCCACACANA 997 consensus_6589#2 ------------------------------------------ consensus_6589#1 ------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||