These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6591#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1298 fasta sequence [CCGCTCATAACGGCTCGACCGTTTCATAACTAACCGACAAACCTTCCGGGGGTTTCCCACATTGTATCTGGCTTATTCTTTGTTTGATACCATATCAGATTTAAACTAGAGGGATGGAAGTCGTTTTTGATGACTGAACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTACTCCTTGAGAGGGAGTACAATTGACATGGTTAAAAGTTGGCGTTATCATTCCCGGAGTATGACACGCAACATCCTCATGTTTGCCATTTTTTGCGGTCCATGTTTTGCTTCCCGTTGTTATTGTGCTTAGGATTGTTTTGTAGTTAAAAGATGATTTAAAG--AAAAAAAAAGCCGTGCTATACATACAACTTGTAATGCCGTACCCTATCATTATGCGCTTCCATATCGCAGCCTTGCGCGAACATGCTCTTTTTCTCAATAATAATTACTGGTGTTTTACGTTCCTAGCACGTGTTTACCCGATAGATGGCGAATGGAAATT----AAACAAAGCCACGTTAGGCGCTACCCATCCGAACTGCTAAGTGCATTCACTATCTGGTTTATCTGGAATAAAACTAAAACTAGACACACGTTGAGGGGGTAGGAAAAAACACTAACTAAAGATGCTTTTGATCCCTGAGAGTGCTGACGAATGACTGACTGTTTGCTTTTTACCGAGATAGTTTAGGAAAGGAAGAAAATAAGATACGAAATGTAGAAACCCTTTTTCACACTAGAATGTATCGACTGCTTAGTGGAAGGAGTTTTTTTTTACTAGACCGTAGTTGATATCGGTGAAAATTAACCGAAATAGACAAAGTGATTGCAGGAAAAGGCATGTTTTAATACGAACCGCCCTGATACGATGCGTCAAGTCTTTCCCATTTTTATGTAGCGTAACAAATGCCGCATTTTTTAAACATTGCACATTTCCCATCTTTATGCCCTTTCTGCCTTTATGGGAGCAAAATGAGAAGCGCTGTGCGTGTAAAGCAGTGCAATTTCCATGATCGCCACTAAACTACAAATTAGGAAACAAAAAGTACGAAATTCGTAGCGTCCAGCGTGAGTAGCGAGCCGGTTGAGGTACTGCTATAGCCGTATTGAGCAAGATGATAACAATTCATATTAAAATTGATTGACAGTTACAGGCAAACAGGCAAAAATTGAATAAAATGTAGCATAGACTATGAAACACGCGGTCAATAGAATAGTGGCTAGAAAGGACGGTTTGCATGTTGGAATTCG-AAAAAAAAACGGAAAAGCAATTCTACACACAACCTTTATCACTTGGTGATGA] [+] EMBL BM618406 [CCGCTCATAACGGCTCGACCGTTTCATAACTAACCGACAAACCTTCCGGGGGTTTCCCACATTGTATCTGGCTTATTCTTTGTTTGATACCATATCAGATTTAAACTAGAGGGATGGAAGTCGTTTTTGATGACTGAACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTACTCCTTGAGAGGGAGTACAATTGACATGGTTAAAAGTTGGCGTTATCATTCCCGGAGTATGACACGCAACATCCTCATGTTTGCCATTTTTTGCGGTCCATGTTTTGCTTCCCGTTGTTATTGTGCTTAGGATTGTTTTGTAGTTAAAAGATGATTTAAAG AAAAAAAAAGCCGTGCTATACATACAACTTGTAATGCCGTACCCTATCATTATGCGCTTCCATATCGCAGCCTTGCGCGAACATGCTCTTTTTCTCAATAATAATTACTGGTGTTTTACGTTCCTAGCACGTGTTTACCCGATAGATGGCGAATGGAAATT AAACAAAGCCACGTTAGGCGCTACCCATCCGAACTGCTAAGTGTATTCACTATCTGGTTTATCTGGAATAAAACTAAAACTAGACACACGTTGAGGGGGTAGGAAAAAACACTAACTAAAGATGCTTTTGATCCCTGAGAGTGCTGACGAATGACTGACTGTTTGCTTTTTACCGAGATAGTTTAGGAAAGGAAGA ] [+] EMBL BX621461 [ TGTTATTGTGCTTAGGATTGTTTTGTAGTTAAAAGATGATTTAAAGAAAAAAAAAAAGCCGTGCTATACATACAACTTGTAATGCCGTACCCTATCATTATGCGCTTCCATATCGCAGCCTTGCGCGAACAAGCTCTTTTTCTCAATAATAATTACTGGTGTTTTACGTTCCTAGCACGTGTTTACCCGATAGATGGCGAATGGAAATTAAAAAAAAAAAGCCACGTTAGGCGCTACCCATCCGAACTGCTAGGTGCATTCACTATC GTTTATCTGGAATAAAACTAAAACTAGACACACGTTGAGGGGGTAGGAAAAAACACTAACTAAAGATGCTTTTGATCCCTGAGAGTGCTGACGAATGACTGACTGTTTGCTTTTTACCGAGATAGTTTAGGAAAGGAAGAAAATAAGATACGAAATGTAGAAACCCTTTTTCACACTAGAATGTATGGACTGCTTAGTGGAAGGAG TTTTTTTACTAGACCGTATTTGATATCGGTGAAAATTAACCGAATTAGACAAAGTGCTTGCANGAAAANGCATGTTTTAATACGAACCGCCCT ] [+] EMBL BX617491 [ TGCTAAGTGCATTCACTATCTGGTTTATCTGGAATAAAACTAAAACTAGACACACGTTGAGGGGGTAGGAAAAAACACTAACTAAAGATGCTTTTGATCCCTGAGAGTGCTGACGAATGACTGACTGTTTGCTTTTTACCGAGATAGTTTAGGAAAGGAAGAAAATAAGATACGAAATGTAGAAACCCTTTTTCACACTAGAATGTATCGACTGCTTAGTGGAAGGAGTTTTTTTTTACTAGACCGTAGTTGATATCGGTGAAAATTAACCGAAATAGACAAAGTGATTGCAGGAAAAGGCATGTTTTAATACGAACCGCCCTGATACGATGCGTCAAGTCTTTCCCATTTTTATGTAGCGTAACAAATGCCGCATTTTTTAAACATTGCACATTTCCCATCTTTATGCCCTTTCTGCCTTTATGGGAGCAAAATGAGAAGCGCTGTGCGTGTAAAGCAGTGCAATTTCCATGATCGCCACTAAACTACAAATTAGGAAACAAAAAGTACGAAATTCGTAGCGTCCAGCGTGAGTAGCGAGCCGGTTGAGGTACTGCTATAGCCGTATTGAGCAAGATGATAACAATTCATATTAAAATTGATTGACAGTTACAGGCAAACAGGCAAAAATTGAATAAAATGTAGCATAGACTATGAAACACGCGGTCAATAGAATAGTGGCTAGAAAGGACGGTTTGCATGTTGGAATTCG AAAAAAAAACGGAAAAGCAATTCTACACACAACCTTTATCACTTG ] [+] EMBL BX611473 [ ATGTATCGACTGCTTAGTGGAAGGAGTTTTTTTTTACTAGACCGTAGTTGATATCGGTGAAAATTAACCGAAATAGACAAAGTGATTGCAGGAAAAGGCATGTTTTAATACGAACCGCCCTGATACGATGCGTCAAGTCTTTCCCATTTTTATGTAGCGTAACAAATGCCGCATTTTTTAAACATTGCACATTTCCCATCTTTATGCCCTTTCTGCCTTTATGGGAGCAAAATGAGAAGCGCTGTGCGTGTAAAGCAGTGCAATTTCCATGATCGCCACTAAACTACAAATTAGGAAACAAAAAGTACGAAATTCGTAGCGTCCAGCGTGAGTAGCGAGCCGGTTGAGGTACTGCTATAGCCGTATTGAGCAAGATGATAACAATTCATATTAAAATTGATTGACAGTTACAGGCAAACAGGCAAAAATTGAATAAAATGTAGCATAGACTATGAAACACGCGGTCAATAGAATAGTGGCTAGAAAGGACGGTTTGCATGTTGG ATTCGAAAAAAAAAACGGAAAAGCAATTCTACACAC ACCTTTATCACTTGGTGATGA] consensusID : consensus_6591#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGGCGAATGGAAATTAAACAAAGCCACGTTAGGCGCTACCCATCCGAACTGCTAAGTGTATTCACTATCTGGTTTATCTGGAATAAAACTAAAACTAGACACACGTTGAGGGGGTAGGAAAAAACACTAACTAAAGATGCTTTTGATCCCTGAGAGTGCTGACGAATGACTGACTGTTTGCTTTTTACCGAGATAGTTTAGGAAAGGAAGAAAATAAGATACGAAATGTAGAAACCCCTTTTTTCACACTAGAATGTATCGACTGTTTAGTGGAAGCAGTTTTTTTACTAGACCGTAGTTGATATCGGTGAAAATTAACCGAAATAGACAAAGTGCTTGCAGGAAAAGGCATGTTTTAATACGAACCGCCCTGATACGATGCGTCAAGTCTTTCCCATTTTTATGTAGCGTAACAAATGCCGCATTTTTTAAACATTGCACATTTCCCATCTTTATGCCCTTTCTGCCTTTATGGGAGCAAAATGAGAAGCGCTGTGCGTGTAAAGCAGTGGAATTTCCATGATCGCCACTAAACTACAAATTAGGAAACAAAAAGTACGAAATTCGTAGCGTCCAGCGTGAGTAGCGAGCCGGT] [+] EMBL BM644043 [CCGCCCACGCGTCCGCCCACGCGTCCGGGCGAATGGAAATTAAACAAAGCCACGTTAGGCGCTACCCATCCGAACTGCTAAGTGTATTCACTATCTGGTTTATCTGGAATAAAACTAAAACTAGACACACGTTGAGGGGGTAGGAAAAAACACTAACTAAAGATGCTTTTGATCCCTGAGAGTGCTGACGAATGACTGACTGTTTGCTTTTTACCGAGATAGTTTAGGAAAGGAAGAAAATAAGATACGAAATGTAGAAACCCCTTTTTTCACACTAGAATGTATCGACTGTTTAGTGGAAGCAGTTTTTTTACTAGACCGTAGTTGATATCGGTGAAAATTAACCGAAATAGACAAAGTGCTTGCAGGAAAAGGCATGTTTTAATACGAACCGCCCTGATACGATGCGTCAAGTCTTTCCCATTTTTATGTAGCGTAACAAATGCCGCATTTTTTAAACATTGCACATTTCCCATCTTTATGCCCTTTCTGCCTTTATGGGAGCAAAATGAGAAGCGCTGTGCGTGTAAAGCAGTGGAATTTCCATGATCGCCACTAAACTACAAATTAGGAAACAAAAAGTACGAAATTCGTAGCGTCCAGCGTGAGTAGCGAGCCGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6591#0 CCGCTCATAACGGCTCGACCGTTTCATAACTAACCGACAAACCTTCCGGGGGTTTCCCAC 60 consensus_6591#1 ------------------------------------------------------------ consensus_6591#0 ATTGTATCTGGCTTATTCTTTGTTTGATACCATATCAGATTTAAACTAGAGGGATGGAAG 120 consensus_6591#1 ------------------------------------------------------------ consensus_6591#0 TCGTTTTTGATGACTGAACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTACT 180 consensus_6591#1 ------------------------------------------------------------ consensus_6591#0 CCTTGAGAGGGAGTACAATTGACATGGTTAAAAGTTGGCGTTATCATTCCCGGAGTATGA 240 consensus_6591#1 ------------------------------------------------------------ consensus_6591#0 CACGCAACATCCTCATGTTTGCCATTTTTTGCGGTCCATGTTTTGCTTCCCGTTGTTATT 300 consensus_6591#1 ------------------------------------------------------------ consensus_6591#0 GTGCTTAGGATTGTTTTGTAGTTAAAAGATGATTTAAAGAAAAAAAAAGCCGTGCTATAC 360 consensus_6591#1 ------------------------------------------------------------ consensus_6591#0 ATACAACTTGTAATGCCGTACCCTATCATTATGCGCTTCCATATCGCAGCCTTGCGCGAA 420 consensus_6591#1 ------------------------------------------------------------ consensus_6591#0 CATGCTCTTTTTCTCAATAATAATTACTGGTGTTTTACGTTCCTAGCACGTGTTTACCCG 480 consensus_6591#1 -----------------------------------------CCGCCCACGCGTCCGCCCA 19 ** **** ** *** consensus_6591#0 ATAGAT--GGCGAATGGAAATTAAACAAAGCCACGTTAGGCGCTACCCATCCGAACTGCT 538 consensus_6591#1 CGCGTCCGGGCGAATGGAAATTAAACAAAGCCACGTTAGGCGCTACCCATCCGAACTGCT 79 * **************************************************** consensus_6591#0 AAGTGCATTCACTATCTGGTTTATCTGGAATAAAACTAAAACTAGACACACGTTGAGGGG 598 consensus_6591#1 AAGTGTATTCACTATCTGGTTTATCTGGAATAAAACTAAAACTAGACACACGTTGAGGGG 139 ***** ****************************************************** consensus_6591#0 GTAGGAAAAAACACTAACTAAAGATGCTTTTGATCCCTGAGAGTGCTGACGAATGACTGA 658 consensus_6591#1 GTAGGAAAAAACACTAACTAAAGATGCTTTTGATCCCTGAGAGTGCTGACGAATGACTGA 199 ************************************************************ consensus_6591#0 CTGTTTGCTTTTTACCGAGATAGTTTAGGAAAGGAAGAAAATAAGATACGAAATGTAGAA 718 consensus_6591#1 CTGTTTGCTTTTTACCGAGATAGTTTAGGAAAGGAAGAAAATAAGATACGAAATGTAGAA 259 ************************************************************ consensus_6591#0 ACCC--TTTTTCACACTAGAATGTATCGACTGCTTAGTGGAAGGAGTTTTTTTTTACTAG 776 consensus_6591#1 ACCCCTTTTTTCACACTAGAATGTATCGACTGTTTAGTGGAAGCAGTTTTTT--TACTAG 317 **** ************************** ********** ******** ****** consensus_6591#0 ACCGTAGTTGATATCGGTGAAAATTAACCGAAATAGACAAAGTGATTGCAGGAAAAGGCA 836 consensus_6591#1 ACCGTAGTTGATATCGGTGAAAATTAACCGAAATAGACAAAGTGCTTGCAGGAAAAGGCA 377 ******************************************** *************** consensus_6591#0 TGTTTTAATACGAACCGCCCTGATACGATGCGTCAAGTCTTTCCCATTTTTATGTAGCGT 896 consensus_6591#1 TGTTTTAATACGAACCGCCCTGATACGATGCGTCAAGTCTTTCCCATTTTTATGTAGCGT 437 ************************************************************ consensus_6591#0 AACAAATGCCGCATTTTTTAAACATTGCACATTTCCCATCTTTATGCCCTTTCTGCCTTT 956 consensus_6591#1 AACAAATGCCGCATTTTTTAAACATTGCACATTTCCCATCTTTATGCCCTTTCTGCCTTT 497 ************************************************************ consensus_6591#0 ATGGGAGCAAAATGAGAAGCGCTGTGCGTGTAAAGCAGTGCAATTTCCATGATCGCCACT 1016 consensus_6591#1 ATGGGAGCAAAATGAGAAGCGCTGTGCGTGTAAAGCAGTGGAATTTCCATGATCGCCACT 557 **************************************** ******************* consensus_6591#0 AAACTACAAATTAGGAAACAAAAAGTACGAAATTCGTAGCGTCCAGCGTGAGTAGCGAGC 1076 consensus_6591#1 AAACTACAAATTAGGAAACAAAAAGTACGAAATTCGTAGCGTCCAGCGTGAGTAGCGAGC 617 ************************************************************ consensus_6591#0 CGGTTGAGGTACTGCTATAGCCGTATTGAGCAAGATGATAACAATTCATATTAAAATTGA 1136 consensus_6591#1 CGGT-------------------------------------------------------- 621 **** consensus_6591#0 TTGACAGTTACAGGCAAACAGGCAAAAATTGAATAAAATGTAGCATAGACTATGAAACAC 1196 consensus_6591#1 ------------------------------------------------------------ consensus_6591#0 GCGGTCAATAGAATAGTGGCTAGAAAGGACGGTTTGCATGTTGGAATTCGAAAAAAAAAC 1256 consensus_6591#1 ------------------------------------------------------------ consensus_6591#0 GGAAAAGCAATTCTACACACAACCTTTATCACTTGGTGATGA 1298 consensus_6591#1 ------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||