These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6595#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 696 fasta sequence [CCGCCCACGCGTCCGTGTTTACATCCTTGGAAAACGTATTTGTTCGCCGT-GAAAAAGGATGGTGCGCCACAATAATCAGCTGCCGGACAATTTGCCGCAGCTGCAGAACCTGATCAAGCGCGATCCGGAATCGTACCGCGATGAGTTCCTGCAGCAGTACCACCATTTCCACAGCGTGCTGGACATCTTCCGGCTCGAGCCGGACAAGGAAAACAAGAGCCTGTGCGAGTCGATCATGTTTCTGGCGCAGATCGCCCAGTGCTACCTGGACGACCTGAAGGCGTTCCCGCAAACGCTGGTCGACCTGCTGAAGACGCACTCGACCACGCTCGATCCGGAGATGCGCAACACGTTCTGCCGGGCGCTGATACTGCTGCGGAACAAGAACCTAATCTCGCCGCTCGATCTGCTGGAGCTGTTCTTCCAGCTGCTGCGCTGCCCGGACAAGGCGCTGCGCACGTTCCTGGAGAACCACATCATCAACGACATCAAAAACATGAACGCCAAGCAGAAGGACATGAAGCTGAACTCGACGCTGCAGAACTTCATGTACACGATGCTGCGGGACACGAACCCGAAGGCGGCCAAGATGTCGGTGGACATCATGATCGAGCTGTAC-CGGAAGCAGGTGTGGAACGATGCGAAAACGGTGAACGTGATCGCGAACGTGGGCTGCTTTTCCAAGTTTACCAAGGT] [+] EMBL BM597423 [CCGCCCACGCGTCCGTGTTTACATCCTTGGAAAACGTATTTGTTCGCCGTGGAAAAAGGATGGTGCGCCACAATAATCAGCTGCCGGACAATTTGCCGCAGCTGCAGAACCTGATCAAGCGCGATCCGGAATCGTACCGCGATGAGTTCCTGCAGCAGTACCACCATTTCCACAGCGTGCTGGACATCTTCCGGCTCGAGCCGGACAAGGAAAACAAGAGCCTGTGCGAGTCGATCATGTTTCTGGCGCAGATCGCCCAGTGCTACCTGGACGACCTGAAGGCGTTCCCGCAAACGCTGGTCGACCTGCTGAAGACGCACTCGACCACGCTCGATCCGGAGATGCGCAACACGTTCTGCCGGGCGCTGATACTGCTGCGGAACAAGAACCTAATCTCGCCGCTCGATCTGCTGGAGCTGTTCTTCCAGCTGCTGCGCTGCCCGGACAAGGCGCTGCGCACGTTCCTGGAGAACCACATCATCAACGACATCAAAAACATGAACGCCAAGCAGAAGGACATGAAGCTGAACTCGACGCTGCAGAACTTCATGTACACGATGCTGCGGGACACGAACCCGAAGGCGGCCAAGATGTCGGTGGACATCATGATCGAGCTGTAC CGGAAGCAGGTGTGGAACGAT ] [+] EMBL BM599659 [ ccgCGTATTTGTTCGCGGT GAAAAAGGATGGTGCGCCACAATAATCAGCTGCCGGACAATTTGCCGCAGCTGCAGAACCTGATCAAGCGCGATCCGGAATCGTACCGCGATGAGTTCCTGCAGCAGTACCACCATTTCCACAGCGTGCTGGACATCTTCCGGCTCGAGCCGGACAAGGAAAACAAGAGCCTGTGCGAGTCGATCATGTTTCTGGCGCAGATCGCCCAGTGCTACCTGGACGACCTGAAGGCGTTCCCGCAAACGCTGGTCGACCTGCTGAAGACGCACTCGACCACGCTCGATCCGGAGATGCGCAACACGTTCTGCCGGGCGCTGATACTGCTGCGGAACAAGAACCTAATCTCGCCGCTCGATCTGCTGGAGCTGTTCTTCCAGCTGCTGCGCTGCCCGGACAAGGCGCTGCGCACGTTCCTGGAGAACCACATCATCAACGACATCAAAAACATGAACGCCAAGCAGAAGGACATGAAGCTGAACTCGACGCTGCAGAACTTCATGTACACGATGCTGCGGGACACGAACCCGAAGGCGGCCAAGATGTCGGTGGACATCATGATCGAGCTGTACAGGGAAGCAGGTGTGGAACGATGCGAAAACGGTGAACGTGATCGCGAACGTGGGCTGCTTTTCCAAGTTTACCAAGGT] [+] EMBL BM617168 [ c cgAAAAGGATGGTGCGCCACAATAATCAGCTGCCGGACAATTTGCCGCAGCTGCAGAACCTGATCAAGCGCGATCCGGAATCGTACCGCGATGAGTTCCTGCAGCAGTACCACCATTTCCACAGCGTGCTGGACATCTTCCGGCTCGAGCCGGACAAGGAAAACAAGAGCCTGTGCGAGTCGATCATGTTTCTGGCGCAGATCGCCCAGTGCTACCTGGACGACCTGAAGGCGTTCCCGCAAACGCTGGTCGACCTGCTGAAGACGCACTCGACCACGCTCGATCCGGAGATGCGCAACACGTTCTGCCGGGCGCTGATACTGCTGCGGAACAAGAACCTAATCTCGCCGCTCGATCTGCTGGAGCTGTTCTTCCAGCTGCTGCGCTGCCCGGACAAGGCGCTGCGCACGTTCCTGGAGAACCACATCATCAACGACATCAAAAACATGAACGCCAAGCAGAAGGACATGAAGCTGAACTCGACGCTGCAGAACTTCATGTACACGATGCTGCGGGACACGAACCCGAAGGCGGCCAAGATGTCGGTGGACATCATGATCGAGCTGTAC CGGAAGCAGGTGTGGAACGATGCGAAAACGGTGAACGTGATCGCGAACGTGGGCTGCTTTTCCAAGTTTACC ] consensusID : consensus_6595#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 612 fasta sequence [CCGCCCACGCGTCCGGTGGTCAGGCCCGTAGCGTAGCTGGCTGTGTTTGTTTACATCCTTGGAAAACGTATTTGTTCGCCGTGGAAAAAGGATGGTGCGCCACAATAATCAGCTGCCGGACAATTTGCCGCAGCTGCAGAACCTGATCAAGCGCGATCCGGAATCGTACCGCGATGAGTTCCTGCAGCAGTACCACCATTTCCACAGCGTGCTGGACATCTTCCGGCTCGAGCCGGACAAGGAAAACAAGAGCCTGTGCGAGTCGATCATGTTTCTGGCGCAGATCGCCCAGTGCTACCTGGACGATCTGAAGGCGTTCCCGCAAACGCTGGTCGATCTGCTGAAGACGCACTCGACCACGCTCGATCCGGAGATGCGCAACACGTTCTGCCGGGCGCTGATACTGCTGCGGAACAAGAACCTAATCTCGCCGCTCGATCTGGCTGGAGCTGTTCTTCCAGCTGCTGCGCTGCCCGGACAAGGCGCTGCGCACGTTCCTGGAGAACCACATCATCAACGACATCAAAAACATGAACGCCAAGCAGAAGGACATGAAGCTGAACTCGACGCTGCAGAACTTCATGTACACGATGCTGCGGGACACGAACCCGA] [+] EMBL BM637988 [CCGCCCACGCGTCCGGTGGTCAGGCCCGTAGCGTAGCTGGCTGTGTTTGTTTACATCCTTGGAAAACGTATTTGTTCGCCGTGGAAAAAGGATGGTGCGCCACAATAATCAGCTGCCGGACAATTTGCCGCAGCTGCAGAACCTGATCAAGCGCGATCCGGAATCGTACCGCGATGAGTTCCTGCAGCAGTACCACCATTTCCACAGCGTGCTGGACATCTTCCGGCTCGAGCCGGACAAGGAAAACAAGAGCCTGTGCGAGTCGATCATGTTTCTGGCGCAGATCGCCCAGTGCTACCTGGACGATCTGAAGGCGTTCCCGCAAACGCTGGTCGATCTGCTGAAGACGCACTCGACCACGCTCGATCCGGAGATGCGCAACACGTTCTGCCGGGCGCTGATACTGCTGCGGAACAAGAACCTAATCTCGCCGCTCGATCTGGCTGGAGCTGTTCTTCCAGCTGCTGCGCTGCCCGGACAAGGCGCTGCGCACGTTCCTGGAGAACCACATCATCAACGACATCAAAAACATGAACGCCAAGCAGAAGGACATGAAGCTGAACTCGACGCTGCAGA ] [+] EMBL BM623334 [ GCCCGTAGCGTAGCTGGCTGTGTTTGTTTACATCCTTGGAAAACGTATTTGTTCGCCGTGGAAAAAGGATGGTGCGCCACAATAATCAGCTGCCGGACAATTTGCCGCAGCTGCAGAACCTGATCAAGCGCGATCCGGAATCGTACCGCGATGAGTTCCTGCAGCAGTACCACCATTTCCACAGCGTGCTGGACATCTTCCGGCTCGAGCCGGACAAGGAAAACAAGAGCCTGTGCGAGTCGATCATGTTTCTGGCGCAGATCGCCCAGTGCTACCTGGACGATCTGAAGGCGTTCCCGCAAACGCTGGTCGATCTGCTGAAGACGCACTCGACCACGCTCGATCCGGAGATGCGCAACACGTTCTGCCGGGCGCTGATACTGCTGCGGAACAAGAACCTAATCTCGCCGCTCGATCT GCTGGAGCTGTTCTTCCAGCTGCTGCGCTGCCCGGACAAGGCGCTGCGCACGTTCCTGGAGAACCACATCATCAACGACATCAAAAACATGAACGCCAAGCAGAAGGACATGAAGCTGAACTCGACGCTGCAGAACTTCATGTACACGATGCTGCGGGACACGAACCCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6595#0 --------------------------------CCGCCCACGCGTCCGTGTTTACATCCTT 28 consensus_6595#1 CCGCCCACGCGTCCGGTGGTCAGGCCCGTAGCGTAGCTGGCTGTGTTTGTTTACATCCTT 60 * ** ************* consensus_6595#0 GGAAAACGTATTTGTTCGCCGTG-AAAAAGGATGGTGCGCCACAATAATCAGCTGCCGGA 87 consensus_6595#1 GGAAAACGTATTTGTTCGCCGTGGAAAAAGGATGGTGCGCCACAATAATCAGCTGCCGGA 120 *********************** ************************************ consensus_6595#0 CAATTTGCCGCAGCTGCAGAACCTGATCAAGCGCGATCCGGAATCGTACCGCGATGAGTT 147 consensus_6595#1 CAATTTGCCGCAGCTGCAGAACCTGATCAAGCGCGATCCGGAATCGTACCGCGATGAGTT 180 ************************************************************ consensus_6595#0 CCTGCAGCAGTACCACCATTTCCACAGCGTGCTGGACATCTTCCGGCTCGAGCCGGACAA 207 consensus_6595#1 CCTGCAGCAGTACCACCATTTCCACAGCGTGCTGGACATCTTCCGGCTCGAGCCGGACAA 240 ************************************************************ consensus_6595#0 GGAAAACAAGAGCCTGTGCGAGTCGATCATGTTTCTGGCGCAGATCGCCCAGTGCTACCT 267 consensus_6595#1 GGAAAACAAGAGCCTGTGCGAGTCGATCATGTTTCTGGCGCAGATCGCCCAGTGCTACCT 300 ************************************************************ consensus_6595#0 GGACGACCTGAAGGCGTTCCCGCAAACGCTGGTCGACCTGCTGAAGACGCACTCGACCAC 327 consensus_6595#1 GGACGATCTGAAGGCGTTCCCGCAAACGCTGGTCGATCTGCTGAAGACGCACTCGACCAC 360 ****** ***************************** *********************** consensus_6595#0 GCTCGATCCGGAGATGCGCAACACGTTCTGCCGGGCGCTGATACTGCTGCGGAACAAGAA 387 consensus_6595#1 GCTCGATCCGGAGATGCGCAACACGTTCTGCCGGGCGCTGATACTGCTGCGGAACAAGAA 420 ************************************************************ consensus_6595#0 CCTAATCTCGCCGCTCGATCTG-CTGGAGCTGTTCTTCCAGCTGCTGCGCTGCCCGGACA 446 consensus_6595#1 CCTAATCTCGCCGCTCGATCTGGCTGGAGCTGTTCTTCCAGCTGCTGCGCTGCCCGGACA 480 ********************** ************************************* consensus_6595#0 AGGCGCTGCGCACGTTCCTGGAGAACCACATCATCAACGACATCAAAAACATGAACGCCA 506 consensus_6595#1 AGGCGCTGCGCACGTTCCTGGAGAACCACATCATCAACGACATCAAAAACATGAACGCCA 540 ************************************************************ consensus_6595#0 AGCAGAAGGACATGAAGCTGAACTCGACGCTGCAGAACTTCATGTACACGATGCTGCGGG 566 consensus_6595#1 AGCAGAAGGACATGAAGCTGAACTCGACGCTGCAGAACTTCATGTACACGATGCTGCGGG 600 ************************************************************ consensus_6595#0 ACACGAACCCGAAGGCGGCCAAGATGTCGGTGGACATCATGATCGAGCTGTACCGGAAGC 626 consensus_6595#1 ACACGAACCCGA------------------------------------------------ 612 ************ consensus_6595#0 AGGTGTGGAACGATGCGAAAACGGTGAACGTGATCGCGAACGTGGGCTGCTTTTCCAAGT 686 consensus_6595#1 ------------------------------------------------------------ consensus_6595#0 TTACCAAGGT 696 consensus_6595#1 ---------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||