These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6596#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 934 fasta sequence [TTTAAGCGCGGTGCGGACCATCTGGAGGAGATAGTGGAAATTTTGAACGCAACCTACTACCAAACCATTTGCAGAGAGGCTTGGTACGAGCTGGGACTGACCTACTCCAACATGCTGAACGTGAAGCTCTCCCAGCTCGACGAAATGCAGGCAAAGGATCGCCCAACGCCGCACGCGCTCAACAAAATCAACCATCTGAGCGAGAAGAGCATTCGGAACTTTAAAAAGTTCATCGAATCGTACAAAATCGAGCTGGACACGCTGGAGCTGCCGGAAACGATTGACGCGGACGAGATGCAACCGATACTGTACGCGTTCTTTCACATCGGGCGCCTGTACTACCGCATCATCACGCCGGACAAGCGGCTGAAGCTGCAGAACACCGAAAACAGCCTGTTCTACTACAGCCGGTTCGTGGAGTGCTGCCAGGACGAGCGGATGCGGCCACTGTTTGCGCAGGAGCTGGGCGTGTGCAAGGAGATGATCAGCCTGCTGCCGCTGAAGGTGGAAAAGCTTAAGAACGAAATGGCAGAAGGCTAGATATATGTAGAGAGAGAGAGGAAAAGACATTCACATTTTACTAACTAACCGATTAATCCTAGTCGCTAGTGCTTCAGGCCTGCATAGGTTTGTGATTGTGGGCTGCACGAGCTCGTTCGAAAAGAAGCCCTCATACGTACTCATTCAATGAATCCTTTCTTGTGACTCCCCCAGTAAAGAGGTGGTGCACGATGCGTGATATACGCTTAAATTGTAGACTTGTTTAGGAACAAGGGATAGAACGAGAACCATGCCCATATAGAAACCAGCTCGCAATCCAAATTGCTTTGACACTGGGAACCATTTAAGCTGCAATCACATTCAAAAAAAGCTGTACCAATCCGCTCCGTTCTGTTCGCGTAAATATACACATTGACGCAATGCAAACATTCGC] [+] EMBL BX614146 [TTTAAGCGCGGTGCGGACCATCTGGAGGAGATAGTGGAAATTTTGAACGCAACCTACTACCAAACCATTTGCAGAGAGGCTTGGTACGAGCTGGGACTGACCTACTCCAACATGCTGAACGTGAAGCTCTCCCAGCTCGACGAAATGCAGGCAAAGGATCGCCCAACGCCGCACGCGCTCAACAAAATCAACCATCTGAGCGAGAAGAGCATTCGGAACTTTAAAAAGTTCATCGAATCGTACAAAATCGAGCTGGACATGCTGG GCTGCCGGAAACGATTGACGCGGACGAGATGCAACCGATACTGTACGCGTTCTTTCACATCGGGCGCCTGTACTACCGCATCATCACGCCGGACAAGCGGCTGAAGCTGCAGAACACCGAAAACAGCCTGTTCTACTACAGCCGGTTCGTGGAGTGCTGCCAGGACGAGCGGATGCGGCCACTGTTTGCGCAGGAGCTGGGCGTGTGCAAGGAGATGATCAGCCTGCTGCCGCTGAAGGTGGAAAAGCTTAAGAACGAAATGGCAGAAGGCTAGATATATGTAGAGAGAGAGAGGAAAAGACATTCACATTTTACTAACTAACC ] [+] EMBL BX610001 [ ggGCGGACCAGCTGGAGGAGAAAGTGGAAATTTTGAACGCAACCTACTACCAAACCATTTGCAGAGAGGCTGGGAACGAGCTGGGACTGACCTACTCCAACATGCGGAACGTGAAGCTCCCCCAGCTCGACGAAAGGCAGGCAAAGGATCGCCCAACGCCGCACGCGCTCAACAAAATCAACCATCTGAGCGAGAAGAGCATTCGGAACTTAAAAAAGTCCATCGAATCGTACAAAATCGAGCTGGACACGCTGGAGCCGCCGGAAACGATTGACGCGGACGAGATGCAACCGATACGGGACGCGggctgt ] [+] EMBL BX608464 [ GACTGACCTTCTCCAACATGCTGAACGTGAAGCTCTCCCAGCTCGACGAAATGCAGGCAAAGGATCGCCCAACGCCGCACGCGCTCAACAAAATCAACCATCTGAGCGAGAAGAGCATTCGGAACTTTAAAAAGTTCATCGAATCGTACAAAATCGAGCTGGACACGCTGGAGCTGCCGGAAACGATTGACGCGGACGAGATGCAACCGATACTGTACGCGTTCTTTCACATCGGGCGCCTGTACTACCGCATCATCACGCCGGACAAGCGGCTGAAGCTGCAGAACACCGAAAACAGCCTGTTCTACTACAGCCGGTTCGTGGAGTGCTGCCAGGACGAGCGGATGCGGCCACTGTTTGCGCAGGAGCTGGGCGTGTGCAAGGAGATGATCAGCCTGCTGCCGCTGAAGGTGGAAAAGCTTAAGAACGAAATGGCAGAAGGCTAGATATATGTAGAGAGAGAGAGGAAAAGACATTCACATTTTACTAACTAACCGATTAATCCTAGTCGCTAGTGCTTCAGGCCTGCATAGGTTTGTGATTGTGGGCTGCACGAGCTCGTTCGAAAAGAAGCCCTCATACGTACTCATTCAATGAATCCTTTCTTGTGACTCCCCCAGTAAAGAGGTGGTGCACGATGCGTGATATACGCTTAAATTGTAGACTTGTTTAGGAACAAGGGATAGAACGAGAACCATGCCCATATAGAAACCAGCTCGCAATCCAAATTGCTTTGACACTGGGAACCATTTAAGCTGCAATCACATTCAAAAAAAGCTGTACCAATCCGCTCCGTTCTGTTCGCGTAAATATACACATTGACGCAATGCAAA ] [+] EMBL BX615963 [ CAAGCGGCTGAAGCTGCAGAACACCGAAAACAGCCTGTTCTACTACAGCCGGTTCGTGGAGTGCTGCCAGGACGAGCGGATGCGGCCACTGTTTGCGCAGGAGCTGGGCGTGTGCAAGTAGATGATCAGCCTGCTGCCGCTGAAGGTGGAAAAGCTTAAGAACGAAATGGCGGAAGGCTGGATGTATGTGGAGAGAGAGAGGAAAAGACATTCACATTTTACTAACTAACCGATTAATCCTAGTCGCTAGTGCTTCGGGCCTGCATAGGTTTGTGATTGTGGGCTGCACGAGCTCGTTCGAAAGGAGGCCCTCATACGTACTCATTCAATGAATCCTTTCTTGTGACTCCCCCAGTAAAGAGGTGGTGCACGATGCGTGATATACGCTTGAATTGTAGACTTGTTTAGGAACAAGGGATAGAACGAGAACCATGCCCATATGGAAACCAGCTCGCAATCCAAATTGCTTTGACACTGGGAACCATTTGGGCTGCAATCACATTCAAGAAAAGCTGTACCAATCCGCTCCGTTCTGTTCGCGTAAATATACACATTGACGCAATGCAAACATTCGC] consensusID : consensus_6596#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 796 fasta sequence [CAAGAATNCCCGAGGTTACACGAAGGAAACGGAAGCGTCACAGTACGCGAAGATTCTGGAGGATATTGCGTCGCTGTACAAGCATTTGGCGTTCTTCGAGGAGGATGATGGGATCAGTGCAAGCTGTTTAAGCGCGGTGCGGACCAGCTGGAGGAGATAGTGGAAATTTTTGAACTGCAACCTACTACAAACCATATTTGCACGCAGAGCGCTNTGGTACGAGCTGGGACTTGACCTACATCCAAAAATGACTGAACTGTGAAAGCGTACTACCCCAGACGTCGAAGCGGGAAACAATAGGCAANGGCCACAACNNACGTGGACTATCTGTCGCCCCACAACACGGCCCCGCAACCAGGCCGACTCCAAATCAAAAAACACATTCCACAACCCAAACTNGACCNCCCGNCACCGCACCAGCACGCGCCATATACCCGCGCANCAACCCTCACTTCCACACNGNACACGTNTCTCCACTACAGACGAACAAAGANTCCTGCNNTATTCANCACACAACAAACATTCACAGANAANGAACCCACATTGTAGGCAGACCGAACACCNNGAGCCCACTGNNGCTGTGACACAGCCCCCCTTTTGACCNCCCCNGNNCGCCATGANATAATCCAGGCAAATGCATATGNNAAACTCGANCACCGATGGTAANACCCGGCCNACATNNCAAACATTGTGNCTGATCACCACCCGCCCGGGGCACANCCTACCACCCCGNCTNGGCGTTAACCCGTCACCGNGCTAACCACATATATNGANANACACAACCATTNCANGGGCG] [+] EMBL AL930918 [CAAGAATNCCCGAGGTTACACGAAGGAAACGGAAGCGTCACAGTACGCGAAGATTCTGGAGGATATTGCGTCGCTGTACAAGCATTTGGCGTTCTTCGAGGAGGATGATGGGATCAGTGCAAGCTGTTTAAGCGCGGTGCGGACCAGCTGGAGGAGATAGTGGAAATTTTTGAACTGCAACCTACTACAAACCATATTTGCACGCAGAGCGCTNTGGTACGAGCTGGGACTTGACCTACATCCAAAAATGACTGAACTGTGAAAGCGTACTACCCCAGACGTCGAAGCGGGAAACAATAGGCAANGGCCACAACNNACGTGGACTATCTGTCGCCCCACAACACGGCCCCGCAACCAGGCCGACTCCAAATCAAAAAACACATTCCACAACCCAAACTNGACCNCCCGNCACCGCACCAGCACGCGCCATATACCCGCGCANCAACCCTCACTTCCACACNGNACACGTNTCTCCACTACAGACGAACAAAGANTCCTGCNNTATTCANCACACAACAAACATTCACAGANAANGAACCCACATTGTAGGCAGACCGAACACCNNGAGCCCACTGNNGCTGTGACACAGCCCCCCTTTTGACCNCCCCNGNNCGCCATGANATAATCCAGGCAAATGCATATGNNAAACTCGANCACCGATGGTAANACCCGGCCNACATNNCAAACATTGTGNCTGATCACCACCCGCCCGGGGCACANCCTACCACCCCGNCTNGGCGTTAACCCGTCACCGNGCTAACCACATATATNGANANACACAACCATTNCANGGGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6596#0 TTTAAGCGCGGTGCGGACCATCTGGAGGAGATAGTGGAAATTTTGAACGCAACCTACTAC 60 consensus_6596#1 --CAAGAATNCCCGAGGTTACACGAAGGAAACGGAAGCGTCACAGTACGCGAAG-ATTCT 57 *** * * * **** * * * * **** * * * consensus_6596#0 CAAACCATTTGCAGAGAGGCTTG-GTACGAGCTGGGACTGACCTACTCCAACATGCTGAA 119 consensus_6596#1 GGAGGATATTGCGTCGCTGTACAAGCATTTGGCGTTCTTCGAGGAGGATGATGGGATCAG 117 * **** * * * * * * * * * * * * consensus_6596#0 CGTGAAGCTCTCCCAGCTCGACGAAATGCAGGCAAAGGATCGCCCAACGCCGCACGCGCT 179 consensus_6596#1 TGC-AAGCTGTTTAAGCGCGGTGCGGACCAGCTGGAGGAGATAGTGGAAATTTTTGAACT 176 * ***** * *** ** * *** **** * ** consensus_6596#0 -CAACAAA--ATCAACCATCTGAGCGAGAAGAGCATTC-GGAACTTTAAAAAGTTCATCG 235 consensus_6596#1 GCAACCTACTACAAACCATATTTGCACGCAGAGCGCTNTGGTACGAGCTGGGACTTGACC 236 **** * * ****** * ** * ***** * ** ** * * consensus_6596#0 AATCGTACAAAATCGAGCTGGACACGCTGGAGCTGCCGGAAACGATTGACGCGGACGAGA 295 consensus_6596#1 TA-CATCCAAAAATGA-CTGAAC-TGTGAAAGCGTACTACCCCAGACGTCG-AAGCGGGA 292 * * * ***** ** *** ** * *** * * * ** ** ** consensus_6596#0 TGCAACCGATACTGTACGCGTTCTTTCACATCGGGCGCCTGTACTACCGCATCATCACGC 355 consensus_6596#1 AACAATAGGCAANGGCCACAAC---NNACGTGGACTATCTGTCGCCCCACAACACGGCCC 349 *** * * * * * ** * * **** ** ** ** * * consensus_6596#0 CGGACAAGCGGCTGAAGCTGCAGAACACCGAAAACAGCCTGTTCTACTACAGCCGGTTCG 415 consensus_6596#1 CG--CAACCAGGCCGA-CTCCAAATCA--AAAAACACATTCCACAACCCAAACTNGACCN 404 ** *** * * * ** ** * ** ****** * * ** * * * * consensus_6596#0 TGGAGTGCTGCCAGGACGAGCGGATGCGGCCACTGTTTGCGCAGGAGCTGGGCGTGTGCA 475 consensus_6596#1 CCCGNCACCGC----ACCAGC--ACGCGCCATATACCCGCGCANCAACC-----CTCACT 453 * ** ** *** * *** * * ***** * * * consensus_6596#0 AGGAGATGATCAGCCTGCTGCCGCTGAAGGTGGAAAAGCTTAAGAACGAAATGGCAGAAG 535 consensus_6596#1 TCCACACNGNACACGTNTCTCCACTACAGACGAACAAAGANTCCTGCNNTATT-CANCAC 512 * * * * ** ** ** * * ** * ** ** * consensus_6596#0 GCTAGATATATGTAGAGAGAGAGAGGAAAAGACATTCACATTTTACTAACTAACCGATTA 595 consensus_6596#1 ACAACAAACATTCACAGANAANGA---------ACCCACATTGTA--GGCAGACCGAACA 561 * * * * ** * *** * ** * ****** ** * ***** * consensus_6596#0 ATCCTAGTC-GCTAGTGCTTCAGGCCTGCATAGGTTTGTGATTGTGGGCTGCACGAGCTC 654 consensus_6596#1 CCNNGAGCCCACTGNNGCTGTGA-----CACAGCCCC---CCTTTTGACCNCCCCNGNNC 613 ** * ** *** ** ** * * * * * * * * consensus_6596#0 GTTCGAAAAGAAGCCCTCATACGTACTCATTCAATGAATCCTTTCTTGTGACTCCCCCAG 714 consensus_6596#1 GCCATGANATAATC---CAGGCAAATGCATATGNNAAACTC--------GANCACCGATG 662 * * * ** * ** * * *** ** * ** ** * consensus_6596#0 TAAAGAGGTGGTGCACGATGCGTGATATACGCTTAAATTGTAGACTTGTTTAGGAACAAG 774 consensus_6596#1 GTAANACCCGGCCNACATNNCAAACATTGTGNCTGA--TCACCACCCGCCC-GGGGCACA 719 ** * ** ** * * * * * * ** * ** ** consensus_6596#0 GGATAGAACGAGAACCATGCCCATATAGAAACCAGCTCGCAATCCAAATTGCTTTGACAC 834 consensus_6596#1 NCCTACCACCCCGNCTNGGC--GTTAACCCGTCACCGNGCTAACCACAT-ATATNGANAN 776 ** ** * ** * * ** * ** * *** ** * ** * consensus_6596#0 TGGGAACCATTTAAGCTGCAATCACATTCAAAAAAAGCTGTACCAATCCGCTCCGTTCTG 894 consensus_6596#1 ACACAACCATTNCANGGGCG---------------------------------------- 796 ******* * ** consensus_6596#0 TTCGCGTAAATATACACATTGACGCAATGCAAACATTCGC 934 consensus_6596#1 ---------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||