These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_660#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 683 fasta sequence [CCTTGTGGGCAGCAGATCGAACCGGAAGAAGACAGCCATCGTACAACGGAAGACGAAAATCATGAACAAAGCAGACAGCAGGGCAGACAGAGCGAGCCCGATCATTGGTTAAACGATGGCTCATTTGTTGACGGCTCTGAGGACAGTAACAGCAGTAACTCGAACAGGCAACACCGCTAAGGGCATTGGTTTGGCAGTACGGATGGCGATCGTAGCTACTGGGCATTCAAGTACAGCGAAACACGGGTAGTGCATCGGGAATGGTACAGCTGCTATTGTAGGAGCAGCAGCAACGACAGCAGCACCAGCACCAGTAACAGCACTTGCGGCAATAACAGCAACGCTACCATAGAACGCACCAACATGCACGGCGAACTGGATCGTGGCAGAATGTTACTACCTGATCACGGGCCAACTAACGCAAGGCAAGCCGAAGATCTTGATCATGCCACTCGCGAACGGAACTGTGGTTCGAGTCGTCAGGAACGGGCGCTTCAGTTTCGGTCGTGTCCTTATCCACATCGGTAGAACGGGCAAAAAGGTGTGCAAATAAGCATCTCTACCAAGACGTAAATAGTAAAAAGTGAGTTAAAAGTACTTACGTCACACTCTGGTTCAGTAGAAGAATCACCTGTCAACGACCTCTTGGTAGACAATGTTGCTTGTGGAGACACCTTCCTCGT] [+] EMBL BX616090 [CCTTGTGGGCAGCAGATCGAACCGGAAGAAGACAGCCATCGTACAACGGAAGACGAAAATCATGAACAAAGCAGACAGCAGGGCAGACAGAGCGAGCCCGATCATTGGTTAAACGATGGCTCATTTGTTGACGGCTCTGAGGACAGTAACAGCAGTAACTCGAACAGGCAACACCGCTAAGGGCATTGGTTTGGCAGTACGGATGGCGATCGTAGCTACTGGGCATTCAAGTACAGCGAAACACGGGTAGTGCATCGGGAATGGTACAGCTGCTATTGTAGGAGCAGCAGCAACGACAGCAGCACCAGCACCAGTAACAGCACTTGCGGCAATAACAGCAACGCTACCATAGAACGCACCAACATGCACGGCGAACTGGATCGTGGCAGAATGTTACTACCTGATCACGGGCCAACTAACGCAAGGCAAGCCGAAGATCTTGATCATGCCACTCGCGAACGGAACTGTGGTTCGAGTCGTCAGGAACGGGCGCTTCAGTTTCGGTCGTGTCCTTATCCACATCGGTAGAACGGGCAAAAAGGTGTGCAAATAAGCATCTCTACCAAGACGTAAATAGTAAAAAGTGAGTTAAAAGTACTTACGTCACACTCTGGTTCAGTAGAAGAATCACCTGTCAACGACCTCTTGGTAGACAATGTTGCTTGTGGAGACACCTTCCTCGT] consensusID : consensus_660#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 643 fasta sequence [AGGTTCTGGTAGATGTATTTAATTACGTCACACTCTGGTTCAGTAGAAGAATCATCTGTCAACGACCTCTCGGTAGACGATGTTGCTTGTGGAGACACCTTCCTCGTCAGCGCGTTTCGGGTTCGGTATCAGCACAGCAATGTTCGCTCGTGATGTCACCCGCGAGAGTGCAACGTATAGCTGGCCATGGGCGAAAACATCTTGCGGCAGATATAGGCCCAAATGGTGAAGCGATTGCCCTTGCGACTTGTTGATGGTCATCGCAAAGCACACTTGCACCGGAAACTGTTTACGGCGGATCTGGAACGGGTGACCCTTATCGTTGCTGTCACAGAAGATCCGTGGAAGCAGGACGTCTTCGTCTCTCCGCGTGCCTGTCAGAATTTTAGCGTGTAAACAGTTTCGCTTTAGGCCTACAATTTGCAAACGCGTACCGTTACACAATCCCATGTCGGAATTAAGATTGCGCAATAAAAGTACTGGTGCAAATCGTTTCAGCCGCAAGCGATGCACTGGGATGCCATGGGCGAAAACATCTTGCGGCAGATATAGGCCCAAATGGTGAAGCGATTGCCCTTGCGACTTGTTGATGGTCATCCGCAAGCACACTTGCACCGGAAACTGTTTACGGCGGATCTGGAAC] [+] EMBL BX614487 [AGGTTCTGGTAGATGTATTTAATTACGTCACACTCTGGTTCAGTAGAAGAATCATCTGTCAACGACCTCTCGGTAGACGATGTTGCTTGTGGAGACACCTTCCTCGTCAGCGCGTTTCGGGTTCGGTATCAGCACAGCAATGTTCGCTCGTGATGTCACCCGCGAGAGTGCAACGTATAGCTGGCCATGGGCGAAAACATCTTGCGGCAGATATAGGCCCAAATGGTGAAGCGATTGCCCTTGCGACTTGTTGATGGTCATCGCAAAGCACACTTGCACCGGAAACTGTTTACGGCGGATCTGGAACGGGTGACCCTTATCGTTGCTGTCACAGAAGATCCGTGGAAGCAGGACGTCTTCGTCTCTCCGCGTGCCTGTCAGAATTTTAGCGTGTAAACAGTTTCGCTTTAGGCCTACAATTTGCAAACGCGTACCGTTACACAATCCCATGTCGGAATTAAGATTGCGCAATAAAAGTACTGGTGCAAATCGTTTCAGCCGCAAGCGATGCACTGGGATGCCATGGGCGAAAACATCTTGCGGCAGATATAGGCCCAAATGGTGAAGCGATTGCCCTTGCGACTTGTTGATGGTCATCCGCAAGCACACTTGCACCGGAAACTGTTTACGGCGGATCTGGAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_660#0 CCTTGTGGGCAGCAGATCGAACCGGAAGAAGACA-GCCATCGTACAACGGAAGACGAAAA 59 consensus_660#1 ---AGGTTCTGGTAGAT-GTATTTAATTACGTCACACTCTGGTTCAGTAGAAG-----AA 51 * * **** * * * * * ** * * ** ** **** ** consensus_660#0 TCATGAACAAAGCAGACAGCAGGGCAGACAGAGCGAGCCCGATCATTGGTTAAACGATGG 119 consensus_660#1 TCATCTGTCAAC--GACCTCTCGGTAGACGATG---------TTGCTTGTGGA--GACAC 98 **** ** *** * ** **** * * * ** * ** consensus_660#0 CTCATTTGTTGACG-GCTCTGAGGACAGTAACAGCA--GTAACTCGAACAGGCAACACCG 176 consensus_660#1 CTTCCTCGTCAGCGCGTTTCGGGTTCGGTATCAGCACAGCAATGTTCGCTCGTGATGTCA 158 ** * ** ** * * * * * *** ***** * ** * * * * consensus_660#0 CTAAGGGCATTGGTTTGGCAGTACGGATGGCGATCGTAGCTACTGGGCATTCAAGTACAG 236 consensus_660#1 CCCGCGAGAGTG---CAAC-GTATAGCTGGCCATGG--GCGAAAACATCTTGCGGCAGAT 212 * * * ** * *** * **** ** * ** * ** * * * consensus_660#0 CGAAACACGGGTAGTGCATCGGGAATGGTACAGCTGCTATTGTAGGAGCAGCAGCAACGA 296 consensus_660#1 ATAGGCCCAAATGGTGAAGCG--ATTGCCCTTGCGACTTGTTGATGGTCATCGCAAAGCA 270 * * * * *** * ** * ** ** ** * * * ** * ** * consensus_660#0 CAGCAGCACCAGCACCAGTA-ACAGCACTTGCGGCA---ATAAC----AGCAACGCTACC 348 consensus_660#1 CACTTGCACCGGAAACTGTTTACGGCGGATCTGGAACGGGTGACCCTTATCGTTGCTGTC 330 ** ***** * * * ** ** ** * ** * * ** * * *** * consensus_660#0 ATAGAACGCACCAACATGCACGGCGAACTGGATCGTGGCAGAATGTTACTACCTGATCAC 408 consensus_660#1 ACAGAAGATCCGTGGAAGCAGGACGTCTTCGTCTCTCCGCGTGCCTGTCAGAATTTTAGC 390 * **** * * *** * ** * * * * * * * * * consensus_660#0 GGGCCAACTAACGCAAGGCAAGCCGAAGATCTTGATCATGCCACTCGCGAACGGAACTGT 468 consensus_660#1 GTGTAAACAGTTTCGCTTTAGGCCTACAAT-TTGCAAACGCGTACCGTTA-CACAATCCC 448 * * *** * * *** * ** *** * ** ** * * ** consensus_660#0 GGTTCGAGTCGTCAGGAACGGGCGCTTCA-GTTTCGGTCGTGTCCTTATCCACATCGGTA 527 consensus_660#1 ATGTCGGA--ATTAAGATTGCGCAATAAAAGTACTGGTGCAAATCGTTTCAGCCGCAAGC 506 *** * * ** * ** * * ** *** * * ** * * consensus_660#0 GAACGGGCAAAAAGGTGTGCAAATAAGCATCTCTACCAAGACGTAAATAGTAAAAAGTGA 587 consensus_660#1 GATGCACTGGGATGCCATGGGCGAAAACATCTTGCGGCAGATATAGGCC-CAAATGGTGA 565 ** * * ** ** ***** *** ** *** **** consensus_660#0 GTTAAAAGTACTTACGTCACACTCTGGTTCAGTAGAAGAATCACCTGT-CAACGACCTCT 646 consensus_660#1 AGCGATTGCCCTTGCGACTTGTTGATGGTCATCCGCAAGCACACTTGCACCGGAAACTGT 625 * * *** ** * * * *** * * *** ** * * ** * consensus_660#0 TGGTAGACAATGTTGCTTGTGGAGACACCTTCCTCGT 683 consensus_660#1 TTACGGCGGATCTGGAAC------------------- 643 * * ** * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||