These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6608#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1362 fasta sequence [CCGGGTGAATGTGTCTTTTTCATTCGGCTAGTTTACTTCTGGCAGAGACACAGAATGGACACAAAGCGATTGAATCTGTCCGACAGTGAGCTGCGACAAATTGTGAACGATCACTTCACAACATGTGACTCAGCCGACCAAGCGTACCGTATC-GTACAAACTGCCCTGGAACCGTTCAGTCCCTGCCCGGAGGGGTTTCTAGCGGATCACTATGCGCTGAAAGTTACGATAGAAAGAAATGGCCAAACGGAGCTGCTTAGCTTCTTCGTCAAGTGTCTACCCACTGAGAATCCGGTGCTAAGAAGCTACCTCGAGGAGATTGGTAGCTTCCGCAAGGAAAGCAGTGTCTTGCAGCGGATAGTGGGATCGATTCAGCGCCACTGCCCATGGCGTACCGTTGCCCCACGGGTGCACTTGGCCGTAGAGGAACAACTGCTCGTCATGAACAATCTTAAGTCCGACGGGTATTCGGTCGTTAAACGCGAAGGTGGTTTGTTGGAGGTGGTATT-CGTGCATCAAGCGC-TAGAAACACTATCCAACCTGCATGCCTGTTCGTTCGTACTGGAACAGAAGCAGGGTAAGCGTTTGCCCGAGCTGTTTCCAGCCGTGCTCAATGAAAATGCTTGGGTGCAGACGTCTACCAGCACAAGAGTGAAGGATGTGGCCAATGTTATCAAGCTGTACACCGAGCTGGTGAAGATATGCGATCACTGGCACGGTCCACGAAAACAAACCATTCTCGAGCGGCTAGCACCGCTGATAAGAAAGATTTACACGTACGTTGAACCGTCGCACGAATTCCGCAACTGTCTCAATCATGGTGATCTTTGGTGTAACAACATCATGTTCAAGTGCGATGGCCAAGGACAGCCGATCGGTTGCGCGCTGGTAGACTATCAACTGTCACGTTATGTGCCACCGGCGTACGACATCAACCTGTTGCTGTACCTAACGACCAGTCGTCAATTGCGAGACGAGAATCTATCTGTGCTGTTAGACCATTATTACAAGTGTTTCGTGGACACGCTGGAACGAAATCAGGTGAATGCGAGCGAGATTTATCCTCGCGAAACGTTTCTTCGGTGCTGCGAGCATTACAGACTCGCAGGGCTCATCCACTCGACGATTATCAGCGGTGAGGTGACTCTGCCGAGCAAGTTTTTGGAGGAAATATTCGGTGACCTGCAGAGTACGGCTAGCTTTATGCCGGACACGAAGGTGTGGATTTGTGTAAAGGCTTTCCAGGCAGACGAACGCTACCGGAAGCATCTGATAGAGTTGCTAGATGAACTGTTTGCTTATGTGTAGAATGTAGCTGCGAAGAAAGTGTGTGACGTTTTCATTTATGCAAAAGTATTAAAT] [+] EMBL BM650116 [CCGGGTGAATGTGTCTTTTTCATTCGGCTAGTTTACTTCTGGCAGAGACACAGAATGGACACAAAGCGATTGAATCTGTCCGACAGTGAGCTGCGACAAATTGTGAACGATCACTTCACAACATGTGACTCAGCCGACCAAGCGTACCGTATC GTACAAACTGCCCTGGAACCGTTCAGTCCCTGCCCGGAGGGGTTTCTAGCGGATCACTATGCGCTGAAAGTTACGATAGAAAGAAATGGCCAAACGGAGCTGCTTAGCTTCTTCGTCAAGTGTCTACCCACTGAGAATCCGGTGCTAAGAAGCTACCTCGAGGAGATTGGTAGCTTCCGCAAGGAAAGCAGTGTCTTGCAGCGGATAGTGGGATCGATTCAGCGCCACTGCCCATGGCGTACCGTTGCCCCACGGGTGCACTTGGCCGTAGAGGAACAACTGCTCGTCATGAACAATCTTAAGTCCGATGGGTATTCGGTCGTTAAACGCGAAGGTGGTTTGTTGGAGGTGGTATT CGTGCAGCAAGCGC TAGAAACACTAGCCAACCTGCATGCCTGTTCGTTCGTACTGGAACAGAAGCAGGGTAAGCGTTTGCCCGAGCTGTTTCCAGCCGTGCTCAATGAAAATGCTTGGGTGCAGACGTCTACCAGCACAAGAGTGAAGGATGTGGCCAATGGTATCAAGCTGTACACCGAGCTG ] [+] EMBL AL695613 [ cccgaggttAATGGACACAAAGCGATTGAATCTGTCCGACAGTGAGCTGCGACAAATTGTGAACGATCACTTCACAACATGTGACTCAGCCGA CAAGCGTACCGTATCTGTACAAACTGGCCTGGAACCGTTCAGTCCCTGCCCGGAGGGGTTTCTAGCGGATCACTATGCGCTGAAAGTTACGATAGAAAGAAATGG CAAACGGAGCTGCTTAGCTTCTTCGTCAAGTGTCTACCCACTGAGAATCCGGTGCTAAGAAGCTA CTCGAGGAGATTGGTAGCTTCCGCAAGGAAAGCAGTGTCTTGCAGCGGATAGTGGGATCGATTCAGCGCCACTG CCATGGCGTA CGTTGCCCCACGGGTGCACTTGG CGTAGAGGAACAACTGGTCGTCATGAACAATCTTAAGTCCGACGGGTATTCGGTCGTTAAACGCGAAGGTGGTTTG TGGAGGTGGTATTCCGTGCATCAAGCGCGTAGAAACACTATTCAACt ] [+] EMBL BX620517 [ CAAATTGTGAACGATCACTTCACAACATGTGACTCAGCCGACCAAGCGTACCGTATC GTACAAACTGCCCTGGAACCGTTCAGTCCCTGCCCGGAGGGGTTTCTAGCGGATCACTATGCGCTGAAAGTTACGATAGAAAGAAATGGCCAAACGGAGCTGCTTAGCTTCTTCGTCAAGTGTCTACCCACTGAGAATCCGGTGCTAAGAAGCTACCTCGAGGAGATTGGTAGCTTCCGCAAGGAAAGCAGTGTCTTGCAGCGGATAGTGGGATCGATTCAGCGCCACTGCCCATGGCGTACCGTTGCCCCACGGGTGCACTTGGCCGTAGAGGAACAACTGCTCGTCATGAACAATCTTAAGTCCGACGGGTATTCGGTCGTTAAACGCGAAGGTGGTTTGTTGGAGGTGGTATT CGTGCATCAAGCGC TAGAAACACTATCCAACCTGCATGCCTGTTCGTTCGTACTGGAACAGAAGCAGGGTAAGCGTTTGCCCGAGCTGTTTCCAACCGTGCTCAATGAAAATGCTTGGGTGCAGACGTCTACCAGCACAAGAGTGAAGGATGTGGCCAATGTTATCAAGCTGTACACCGAGCTGGTGAAGATATGCGATCACTGGCACGGTCCACGAAAACAAACCATTCTCGAGCGGCTAGCACCGCTGATAAGAAAGATTTACACGTACGTTGAACCGTCGCACGAATTCCGCAACTGTCTCAATCATGGTGATCTTTGGTGTAACAACATCATGTTCAAGTGCGATGGCCAAGGACAGCCGAT ] [+] EMBL BX624110 [ GCTTGGGTGCAGACGTCTACCAGCACAAGAGTGAAGGATGTGGCCAATGTTATCAAGCTGTACACCGAGCTGGTGAAGATATGCGATCACTGGCACGGTCCACGAAAACAAACCATTCTCGAGCGGCTAGCACCGCTGATAAGAAAGATTTACACGTACGTTGAACCGTCGCACGAATTCCGCAACTGTCTCAATCATGGTGATCTTTGGTGTAACAACATCATGTTCAAGTGCGATGGCCAAGGACAGCCGATCGGTTGCGCGCTGGTAGACTATCAACTGTCACGTTATGTGCCACCGGCGTACGACATCAACCTGTTGCTGTACCTAACGACCAGTCGTCAATTGCGAGACGAGAATCTATCTGTGCTGTTAGACCATTATTACAAGTGTTTCGTGGACACGCTGGAACGAAATCAGGTGAATGCGAGCGAGATTTATCCTCGCGAAACGTTTCTTCGGTGCTGCGAGCATTACAGACTCGCAGGGCTCATCCACTCGACGATTATCAGCGGTGAGGTGACTCTGCCGAGCAAGTTTTTGGAGGAAATATTCGGTGACCTGCAGAGTACGGCTAGCTTTATGCCGGACACGAAGGTGTGGATTTGTGTAAAGGCTTTCCAGGCAGACGAACGCTACCGGAAGCATCTGATAGAGTTGCTAGATGAACTGTTTGCTTATGTGTAGAATGTAGCTGCGAAGAAAGTGTGTGACGTTTTCATTTATGCAAAAGTATTAAAT] consensusID : consensus_6608#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 526 fasta sequence [CCGCCCACGCGTCCGGAAGCATCTCATAGAGTTGCTAGATGAACTGTTTGCTTATGTGTAGAATGTAGCTGTGAAACAAGAGTGAAGGATGTGGCCAATGTTATCAAGCTGTACACCGAGCTGGTGAAGATATGCGATCACTGGCACGGTCCACGAAAACAAACCATTCTCGAGCGGCTAGCACCGCTGATAAGAAAGATTTACACGTACGTTGAACCGTCGCACGAATTCCGCAACTGTCTCAATCACGGTGATCTTTGGTGTAACAACATCATGTTCAAGTGCGATGGCCAAGGACAGCCGATCGGTTGCGCGCTGGTAGACTATCAACTGTCACGTTATGTGCCACCGGCGTACGACATCAACCTGTTGCTGTACCTAACGACTAGTCGTCAATTGCGAGACGAGAATCTAACTGCACTGTTAGACCATTATTACAAGTGTTTCGTGGACACGCTGGAACGAAATCAGGTGAATGCGAGCGAGATTTATCCTCGCGAAACGTTTCTTCGGTGCTGCGAGCATT] [+] EMBL BM628049 [CCGCCCACGCGTCCGGAAGCATCTCATAGAGTTGCTAGATGAACTGTTTGCTTATGTGTAGAATGTAGCTGTGAAACAAGAGTGAAGGATGTGGCCAATGTTATCAAGCTGTACACCGAGCTGGTGAAGATATGCGATCACTGGCACGGTCCACGAAAACAAACCATTCTCGAGCGGCTAGCACCGCTGATAAGAAAGATTTACACGTACGTTGAACCGTCGCACGAATTCCGCAACTGTCTCAATCACGGTGATCTTTGGTGTAACAACATCATGTTCAAGTGCGATGGCCAAGGACAGCCGATCGGTTGCGCGCTGGTAGACTATCAACTGTCACGTTATGTGCCACCGGCGTACGACATCAACCTGTTGCTGTACCTAACGACTAGTCGTCAATTGCGAGACGAGAATCTAACTGCACTGTTAGACCATTATTACAAGTGTTTCGTGGACACGCTGGAACGAAATCAGGTGAATGCGAGCGAGATTTATCCTCGCGAAACGTTTCTTCGGTGCTGCGAGCATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6608#0 CCGGGTGAATGTGTCTTTTTCATTCGGCTAGTTTACTTCTGGCAGAGACACAGAATGGAC 60 consensus_6608#1 ------------------------------------------------------------ consensus_6608#0 ACAAAGCGATTGAATCTGTCCGACAGTGAGCTGCGACAAATTGTGAACGATCACTTCACA 120 consensus_6608#1 ------------------------------------------------------------ consensus_6608#0 ACATGTGACTCAGCCGACCAAGCGTACCGTATCGTACAAACTGCCCTGGAACCGTTCAGT 180 consensus_6608#1 ------------------------------------------------------------ consensus_6608#0 CCCTGCCCGGAGGGGTTTCTAGCGGATCACTATGCGCTGAAAGTTACGATAGAAAGAAAT 240 consensus_6608#1 ------------------------------------------------------------ consensus_6608#0 GGCCAAACGGAGCTGCTTAGCTTCTTCGTCAAGTGTCTACCCACTGAGAATCCGGTGCTA 300 consensus_6608#1 ------------------------------------------------------------ consensus_6608#0 AGAAGCTACCTCGAGGAGATTGGTAGCTTCCGCAAGGAAAGCAGTGTCTTGCAGCGGATA 360 consensus_6608#1 ------------------------------------------------------------ consensus_6608#0 GTGGGATCGATTCAGCGCCACTGCCCATGGCGTACCGTTGCCCCACGGGTGCACTTGGCC 420 consensus_6608#1 ------------------------------------------------------------ consensus_6608#0 GTAGAGGAACAACTGCTCGTCATGAACAATCTTAAGTCCGACGGGTATTCGGTCGTTAAA 480 consensus_6608#1 ------------------------------------------------------------ consensus_6608#0 CGCGAAGGTGGTTTGTTGGAGGTGGTATTCGTGCATCAAGCGCTAGAAACACTATCCAAC 540 consensus_6608#1 ------------------------------------------------------------ consensus_6608#0 CTGCATGCCTGTTCGTTCGTACTGGAACAGAAGCAGGGTAAGCGTTTGCCCGAGCTGTTT 600 consensus_6608#1 ---------------------------------CCGCCCACGCGTCCGG--AAGCATCTC 25 * * * **** * *** * consensus_6608#0 CCAGCCGTGCTCAATGAAAA---TGCTTGGGTGCAGACGTCTACCAGC---ACAAGAGTG 654 consensus_6608#1 ATAGAGTTGCTAGATGAACTGTTTGCTTATGTGTAGA-ATGTAGCTGTGAAACAAGAGTG 84 ** **** ***** ***** *** *** * ** * * ********* consensus_6608#0 AAGGATGTGGCCAATGTTATCAAGCTGTACACCGAGCTGGTGAAGATATGCGATCACTGG 714 consensus_6608#1 AAGGATGTGGCCAATGTTATCAAGCTGTACACCGAGCTGGTGAAGATATGCGATCACTGG 144 ************************************************************ consensus_6608#0 CACGGTCCACGAAAACAAACCATTCTCGAGCGGCTAGCACCGCTGATAAGAAAGATTTAC 774 consensus_6608#1 CACGGTCCACGAAAACAAACCATTCTCGAGCGGCTAGCACCGCTGATAAGAAAGATTTAC 204 ************************************************************ consensus_6608#0 ACGTACGTTGAACCGTCGCACGAATTCCGCAACTGTCTCAATCATGGTGATCTTTGGTGT 834 consensus_6608#1 ACGTACGTTGAACCGTCGCACGAATTCCGCAACTGTCTCAATCACGGTGATCTTTGGTGT 264 ******************************************** *************** consensus_6608#0 AACAACATCATGTTCAAGTGCGATGGCCAAGGACAGCCGATCGGTTGCGCGCTGGTAGAC 894 consensus_6608#1 AACAACATCATGTTCAAGTGCGATGGCCAAGGACAGCCGATCGGTTGCGCGCTGGTAGAC 324 ************************************************************ consensus_6608#0 TATCAACTGTCACGTTATGTGCCACCGGCGTACGACATCAACCTGTTGCTGTACCTAACG 954 consensus_6608#1 TATCAACTGTCACGTTATGTGCCACCGGCGTACGACATCAACCTGTTGCTGTACCTAACG 384 ************************************************************ consensus_6608#0 ACCAGTCGTCAATTGCGAGACGAGAATCTATCTGTGCTGTTAGACCATTATTACAAGTGT 1014 consensus_6608#1 ACTAGTCGTCAATTGCGAGACGAGAATCTAACTGCACTGTTAGACCATTATTACAAGTGT 444 ** *************************** *** ************************ consensus_6608#0 TTCGTGGACACGCTGGAACGAAATCAGGTGAATGCGAGCGAGATTTATCCTCGCGAAACG 1074 consensus_6608#1 TTCGTGGACACGCTGGAACGAAATCAGGTGAATGCGAGCGAGATTTATCCTCGCGAAACG 504 ************************************************************ consensus_6608#0 TTTCTTCGGTGCTGCGAGCATTACAGACTCGCAGGGCTCATCCACTCGACGATTATCAGC 1134 consensus_6608#1 TTTCTTCGGTGCTGCGAGCATT-------------------------------------- 526 ********************** consensus_6608#0 GGTGAGGTGACTCTGCCGAGCAAGTTTTTGGAGGAAATATTCGGTGACCTGCAGAGTACG 1194 consensus_6608#1 ------------------------------------------------------------ consensus_6608#0 GCTAGCTTTATGCCGGACACGAAGGTGTGGATTTGTGTAAAGGCTTTCCAGGCAGACGAA 1254 consensus_6608#1 ------------------------------------------------------------ consensus_6608#0 CGCTACCGGAAGCATCTGATAGAGTTGCTAGATGAACTGTTTGCTTATGTGTAGAATGTA 1314 consensus_6608#1 ------------------------------------------------------------ consensus_6608#0 GCTGCGAAGAAAGTGTGTGACGTTTTCATTTATGCAAAAGTATTAAAT 1362 consensus_6608#1 ------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||