cluster # 6609

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Anopheles gambiae
cluster # 6609 cluster # 6609 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6609#0 length = 1065 sequences # 4

consensus_6609#1 length = 604 sequences # 1

consensusID : consensus_6609#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1065
fasta sequence

                              [CCGGCCGCCCGATGGCGGTGATGGTGGGCTCGGCATGGCGTCACTGTTACCGGCCCTACCGAGCGGTAGTGCGACGGTCCCGGGCGCTCCCAATGGTTCACCGTTGGCCGGTGGTAGCAGCGGCAGTAGTAACGGTGCTGCACCATCCGCTTCCTCGTCGGCTGCAGCGTCCTGTTCGCAGCAGGCCCGCCTTAACGCCATGCCGTGTGATGTGACGATCGACGAGATGGCGAGCTACTTCGAGACGCTCGTTTACATCCCGAAAAAGATGTCGACGATGGCGGAGATGATGTACATTTAGGGTGTGTTAGGGGGCGAGAAGAGGAGGCGATTACCACGTGAGCACGCGCACCGATCGCGTGATCTGGTTCCGCGCTTCGGGTGGTAGTGGTTCCGGTTCGTAAAACGGTGTCGTGTCCTGTACATTTATTTCACTATTCCTTTGTTGGGTGTTGTAAGCATTATCGTAACCGTGTCGTTCTATGGCGCCCGCCTGTTGTGTCCGATGTAAGCCTGCGCAGGAACCGTTCCTGCGGGCGAACTGCGTATCTAGGCCATGTGAAATTTTATTATTTTTTTACACTAAATCTATCTGTAGGCAATTTTGTTCTGTTGCTTCCTGCAAGCACGCTCCTCAAATGCAAAGCAGTGTGGGTGAGTTTAAATTAGCCAACAATACACAGCATACTCTTCAGAACTTTGTATGG-AAATATCAGTTAGTTTAATGTGGAATGTCTATAATTCTGGCCAACGCACCTGCGTACGCTGGTTTTACTAGCATGTTCGAACGGGATAAAGAGTAGCGAAAAATGAAAATGATCTGTATAACTGTCCCTATGGAAATGGGTTTGATTTGAAGAGGCCACACTGAACAAATCGATAGAACAATTCCTTCTGCCAGTGTCTATGCTATAGATGGGGAGTCGTGCTAGATAGATAGATGTTGCCTGCACAGATACGCGACCTCGAATGTGTGTGAGTGTGTTTTGTTTTCTCTACAAACAGTTCAGCCTATTTCGAAGGGTGACGATACGATCAATATTCCCCGGGTTTTTCCATTTAAAT]

[+] EMBL BM644852             [CCGGCCGCCCGATGGCGGTGATGGTGGGCTCGGCATGGCGTCACTGTTACCGGCCCTACCGAGCGGTAGTGCGACGGTCCCGGGCGCTCCCAATGGTTCACCGTTGGCCGGTGGTAGCAGCGGCAGTAGTAACGGTGCTGCACCATCCGCTTCCTCGTCGGCTGCAGCGTCCTGTTCGCAGCAGGCCCGCCTTAACGCCATGCCGTGTGATGTGACGATCGACGAGATGGCGAGCTACTTCGAGACGCTCGTTTACATCCCGAAAAAGATGTCGACGATGGCGGAGATGATGTACATTTAGGGTGTGTTAGGGGGCGAGAAGAGGAGGCGATTACCACGTGAGCACGCGCACCGATCGCGTGATCTGGTTCCGCGCTTCGGGTGGTAGTGGTTCCGGTTCGTAAAACGGTGTCGTGTCCTGTACATTTATTTCACTATTCCTTTGTTGGGTGTTGTAAGCATTATCGTAACCGTGTCGTTCTATGGCGCCCGCCTGTTGTGTCCGATGTAAGCCTGCGCAGGAACCGTTCCTGCGGGCGAACTGCGTATCTAGGCCATGTGAAATTTTATTATTTTTTTACACTAAATCTATCTGTAGGCAATTTTGTTCTGTTGCTTCCTGCAAGCACGCTCCTCAAATGCAAAGCAGTGTGGGTGAGTTTAAATTAGCCAACAATACACAGCATACTCTTCAGAACTTTG                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BX613382             [                                                  CGGCCCTACCGAGCGGTAGTGCGACGGTCCCGGGCGCTCCCAATGGTTCACCGTTGGCCGGTGGTAGCAGCGGCAGTAGTAACGGTGCTGCACCATCCGCTTCCTCGTCGGCTGCAGCGTCCTGTTCGCAGCAGGCCCGCCTTAACGCCATGCCGTGTGATGTGACGATCGACGAGATGGCGAGCTACTTCGAGACGCTCGTTTACATCCCGAAAAAGATGTCGACGATGGCGGAGATGATGTACATTTAGGGTGTGTTAGGGGGCGAGAAGAGGAGGCGATTACCACGTGAGCACGCGCACCGATCGCGTGATCTGGTTCCGCGCTTCGGGTGGTAGTGGTTCCGGTTCGTAAAACGGTGTCGTGTCCTGTACATTTATTTCACTATTCCTTTGTTGGGTGTTGTAAGCATTATCGTAACCGTGTCGTTCTATGGCGCCCGCCTGTTGTGTCCGATGTAAGCCTGCGCAGGAACCGTTCCTGCGGGCGAACTGCGTATCTAGGCCATGTGAAATTTTATTATTTTTTTACACTAAATCTATCTGTAGGCAATTTTGTTCTGTTGCTTCCTGCAAGCACGCTCCTCAAATGCAAAGCAGT                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BM580679             [                                                                                                                                                                                                                                                                                                                                                                                                  ccgGGTTCCGGTTCGTAAAACGGTGTCGTGTCCTGTACATTTATTTCACTATTCCTTTGTTGGGTGTTGTAAGCATTATCGTAACCGTGTCGTTCTATGGCGCCCGCCTGTTGTGTCCGATGTAAGCCTGCGCAGGAACCGTTCCTGCGGGCGAACTGCGTATCTAGGCCATGTGAAATTTTATTATTTTTTTACACTAAATCTATCTGTAGGCAATTTTGTTCTGTTGCTTCCTGCAAGCACGCTCCTCAAATGCAAAGCAGTGTGGGTGAGTTTAAATTAGCCAACAATACACAGCATACTCTTCAGAACTTTGTATGG AAATATCAGTTAGTTTAATGTGGAATGTCTATAATTCTGGCCAACGCACCTGCGTACGCTGGTTTTACTAGCATGTTCGAACGGGATAAAGAGTAGCGAAAAATGAAAATGATCTGTATAACTGTCCCTATGGAAATGGGTTTGATTTGAAGAGGCCACACTGAACAAATCGATAGAACAATTCCTTCTGCCAGTGTCTATGCTATAGATGGGGAGTCGTGCTAGATAGATAGATGTTGCCTGCACAGATACGCGACCTCGAATGTGTGTGAGTGTGTTTTGTTTTCTCTACAAACAGTTCAGCCTATTTCGAAGGGTGACGATACGATCAATATTCCCCGGGTTTTTCCATTTAAAT]
[+] EMBL BX603153             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GTGTCGTTCTATGGCGCCCGCCTGTTGTGTCCGATGTAAGCCTGCGCAGGAACCGTTCCTGCGGGCGAACTGCGTATCTAGGCCATGTGAAATTTTATTATTTTTTTACACTAAATCTATCTGTAGGCAATTTTGTTCTGTTGCTTCCTGCAAGCACGCTCCTCAAATGCAAAGCAGTGTGGGTGAGTTTAAATTAGCCAACAATACACAGCATACTCTTCAGAACTTTGTATGGAAAATATCAGTTAGTTTTATGTGGAATGTCTATAATTC                                                                                                                                                                                                                                                                                                                                 ]




>consensus_6609#0
CCGGCCGCCCGATGGCGGTGATGGTGGGCTCGGCATGGCGTCACTGTTACCGGCCCTACC
GAGCGGTAGTGCGACGGTCCCGGGCGCTCCCAATGGTTCACCGTTGGCCGGTGGTAGCAG
CGGCAGTAGTAACGGTGCTGCACCATCCGCTTCCTCGTCGGCTGCAGCGTCCTGTTCGCA
GCAGGCCCGCCTTAACGCCATGCCGTGTGATGTGACGATCGACGAGATGGCGAGCTACTT
CGAGACGCTCGTTTACATCCCGAAAAAGATGTCGACGATGGCGGAGATGATGTACATTTA
GGGTGTGTTAGGGGGCGAGAAGAGGAGGCGATTACCACGTGAGCACGCGCACCGATCGCG
TGATCTGGTTCCGCGCTTCGGGTGGTAGTGGTTCCGGTTCGTAAAACGGTGTCGTGTCCT
GTACATTTATTTCACTATTCCTTTGTTGGGTGTTGTAAGCATTATCGTAACCGTGTCGTT
CTATGGCGCCCGCCTGTTGTGTCCGATGTAAGCCTGCGCAGGAACCGTTCCTGCGGGCGA
ACTGCGTATCTAGGCCATGTGAAATTTTATTATTTTTTTACACTAAATCTATCTGTAGGC
AATTTTGTTCTGTTGCTTCCTGCAAGCACGCTCCTCAAATGCAAAGCAGTGTGGGTGAGT
TTAAATTAGCCAACAATACACAGCATACTCTTCAGAACTTTGTATGGAAATATCAGTTAG
TTTAATGTGGAATGTCTATAATTCTGGCCAACGCACCTGCGTACGCTGGTTTTACTAGCA
TGTTCGAACGGGATAAAGAGTAGCGAAAAATGAAAATGATCTGTATAACTGTCCCTATGG
AAATGGGTTTGATTTGAAGAGGCCACACTGAACAAATCGATAGAACAATTCCTTCTGCCA
GTGTCTATGCTATAGATGGGGAGTCGTGCTAGATAGATAGATGTTGCCTGCACAGATACG
CGACCTCGAATGTGTGTGAGTGTGTTTTGTTTTCTCTACAAACAGTTCAGCCTATTTCGA
AGGGTGACGATACGATCAATATTCCCCGGGTTTTTCCATTTAAAT

consensusID : consensus_6609#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 604
fasta sequence

                              [ACATGCCTGCTTTTTTGTTTTATTTTTTTTTTTTTTTTTTTCCTTTTTTTCTTTTTTTTTACACTAAATCTATCTTGTAGGCAATTTTGTTCTGTTGCTTCCTGCAAGCACGCTCCTCAAATGCAAAGCAGTGTGGGTAGAGTTTAAATTAGCCAACAATACACAGCATACTCTTCAGAACATTGTATGGAAATATCAGTTAGTTTAATGTGGAATGTCTATAATTCTGGCCTACGCACATGCGTACGCTGGTTTTACAAGCAAGTTCGAATAAATGGGATAACGAGTAGCGAAAAATGAAAATGATCTGTAGAACTGTCCCTATGGAAATGGGTTTGATTTGAAGAGGCCACACTGAACAAATCGATAGAACAATTCCTTCTGCCAGTGTCTATGCTATAGATGGGGAGTCGTGCTAGATAGATAGATGTTGCCTGCACAGGTACGCGACCTCGAATGTGTGTGTGAGTGTGTTTCGTTTGTCTCTACAAACAGTTCAGCCTATTTCGAAGGGTGACGATACGATCAATATTCCCGGGTTTTTCCATTTAAATGTAATCCTGAACTCTGTAATCCTNATTTAAGTNTCNCATGGTCAACACTT]

[+] EMBL BX466868             [ACATGCCTGCTTTTTTGTTTTATTTTTTTTTTTTTTTTTTTCCTTTTTTTCTTTTTTTTTACACTAAATCTATCTTGTAGGCAATTTTGTTCTGTTGCTTCCTGCAAGCACGCTCCTCAAATGCAAAGCAGTGTGGGTAGAGTTTAAATTAGCCAACAATACACAGCATACTCTTCAGAACATTGTATGGAAATATCAGTTAGTTTAATGTGGAATGTCTATAATTCTGGCCTACGCACATGCGTACGCTGGTTTTACAAGCAAGTTCGAATAAATGGGATAACGAGTAGCGAAAAATGAAAATGATCTGTAGAACTGTCCCTATGGAAATGGGTTTGATTTGAAGAGGCCACACTGAACAAATCGATAGAACAATTCCTTCTGCCAGTGTCTATGCTATAGATGGGGAGTCGTGCTAGATAGATAGATGTTGCCTGCACAGGTACGCGACCTCGAATGTGTGTGTGAGTGTGTTTCGTTTGTCTCTACAAACAGTTCAGCCTATTTCGAAGGGTGACGATACGATCAATATTCCCGGGTTTTTCCATTTAAATGTAATCCTGAACTCTGTAATCCTNATTTAAGTNTCNCATGGTCAACACTT]




>consensus_6609#1
ACATGCCTGCTTTTTTGTTTTATTTTTTTTTTTTTTTTTTTCCTTTTTTTCTTTTTTTTT
ACACTAAATCTATCTTGTAGGCAATTTTGTTCTGTTGCTTCCTGCAAGCACGCTCCTCAA
ATGCAAAGCAGTGTGGGTAGAGTTTAAATTAGCCAACAATACACAGCATACTCTTCAGAA
CATTGTATGGAAATATCAGTTAGTTTAATGTGGAATGTCTATAATTCTGGCCTACGCACA
TGCGTACGCTGGTTTTACAAGCAAGTTCGAATAAATGGGATAACGAGTAGCGAAAAATGA
AAATGATCTGTAGAACTGTCCCTATGGAAATGGGTTTGATTTGAAGAGGCCACACTGAAC
AAATCGATAGAACAATTCCTTCTGCCAGTGTCTATGCTATAGATGGGGAGTCGTGCTAGA
TAGATAGATGTTGCCTGCACAGGTACGCGACCTCGAATGTGTGTGTGAGTGTGTTTCGTT
TGTCTCTACAAACAGTTCAGCCTATTTCGAAGGGTGACGATACGATCAATATTCCCGGGT
TTTTCCATTTAAATGTAATCCTGAACTCTGTAATCCTNATTTAAGTNTCNCATGGTCAAC
ACTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6609#0      CCGGCCGCCCGATGGCGGTGATGGTGGGCTCGGCATGGCGTCACTGTTACCGGCCCTACC 60
consensus_6609#1      ------------------------------------------------------------
                                                                                  

consensus_6609#0      GAGCGGTAGTGCGACGGTCCCGGGCGCTCCCAATGGTTCACCGTTGGCCGGTGGTAGCAG 120
consensus_6609#1      ------------------------------------------------------------
                                                                                  

consensus_6609#0      CGGCAGTAGTAACGGTGCTGCACCATCCGCTTCCTCGTCGGCTGCAGCGTCCTGTTCGCA 180
consensus_6609#1      ------------------------------------------------------------
                                                                                  

consensus_6609#0      GCAGGCCCGCCTTAACGCCATGCCGTGTGATGTGACGATCGACGAGATGGCGAGCTACTT 240
consensus_6609#1      ------------------------------------------------------------
                                                                                  

consensus_6609#0      CGAGACGCTCGTTTACATCCCGAAAAAGATGTCGACGATGGCGGAGATGATGTACATTTA 300
consensus_6609#1      ------------------------------------------------------------
                                                                                  

consensus_6609#0      GGGTGTGTTAGGGGGCGAGAAGAGGAGGCGATTACCACGTGAGCACGCGCACCGATCGCG 360
consensus_6609#1      ------------------------------------------------------------
                                                                                  

consensus_6609#0      TGATCTGGTTCCGCGCTTCGGGTGGTAGTGGTTCCGGTTCGTAAAACGGTGTCGTGTCCT 420
consensus_6609#1      ------------------------------------------------------------
                                                                                  

consensus_6609#0      GTACATTTATTTCACTATTCCTTTGTTGGGTGTTGTAAGCATTATCGTAACCGTGTCGTT 480
consensus_6609#1      ------------------------------------------------------------
                                                                                  

consensus_6609#0      CTATGGCGCCCGCCTGTTGTGTCCGATGTAAGCCTGCGCAGGAACCGTTCCTGCGGGCGA 540
consensus_6609#1      ---------------------------------------ACATGCCTGCTTTTTTGTTTT 21
                                                             *    **     *   *    

consensus_6609#0      ACTGCGTATCTAGGCCATGTGAAATTTTATTATTTTTTTACACTAAATCTATCT-GTAGG 599
consensus_6609#1      ATTTTTTTTTTTTTTTTTTTCCTTTTTTTCTTTTTTTTTACACTAAATCTATCTTGTAGG 81
                      * *   * * *      * *    ****  * ********************** *****

consensus_6609#0      CAATTTTGTTCTGTTGCTTCCTGCAAGCACGCTCCTCAAATGCAAAGCAGTGTGGGT-GA 658
consensus_6609#1      CAATTTTGTTCTGTTGCTTCCTGCAAGCACGCTCCTCAAATGCAAAGCAGTGTGGGTAGA 141
                      ********************************************************* **

consensus_6609#0      GTTTAAATTAGCCAACAATACACAGCATACTCTTCAGAACTTTGTATGGAAATATCAGTT 718
consensus_6609#1      GTTTAAATTAGCCAACAATACACAGCATACTCTTCAGAACATTGTATGGAAATATCAGTT 201
                      **************************************** *******************

consensus_6609#0      AGTTTAATGTGGAATGTCTATAATTCTGGCCAACGCACCTGCGTACGCTGGTTTTACTAG 778
consensus_6609#1      AGTTTAATGTGGAATGTCTATAATTCTGGCCTACGCACATGCGTACGCTGGTTTTACAAG 261
                      ******************************* ****** ****************** **

consensus_6609#0      CATGTTCGAAC----GGGATAAAGAGTAGCGAAAAATGAAAATGATCTGTATAACTGTCC 834
consensus_6609#1      CAAGTTCGAATAAATGGGATAACGAGTAGCGAAAAATGAAAATGATCTGTAGAACTGTCC 321
                      ** *******     ******* **************************** ********

consensus_6609#0      CTATGGAAATGGGTTTGATTTGAAGAGGCCACACTGAACAAATCGATAGAACAATTCCTT 894
consensus_6609#1      CTATGGAAATGGGTTTGATTTGAAGAGGCCACACTGAACAAATCGATAGAACAATTCCTT 381
                      ************************************************************

consensus_6609#0      CTGCCAGTGTCTATGCTATAGATGGGGAGTCGTGCTAGATAGATAGATGTTGCCTGCACA 954
consensus_6609#1      CTGCCAGTGTCTATGCTATAGATGGGGAGTCGTGCTAGATAGATAGATGTTGCCTGCACA 441
                      ************************************************************

consensus_6609#0      GATACGCGACCTCGAATGTGTGTG--AGTGTGTTTTGTTT-TCTCTACAAACAGTTCAGC 1011
consensus_6609#1      GGTACGCGACCTCGAATGTGTGTGTGAGTGTGTTTCGTTTGTCTCTACAAACAGTTCAGC 501
                      * **********************  ********* **** *******************

consensus_6609#0      CTATTTCGAAGGGTGACGATACGATCAATATTCCCCGGGTTTTTCCATTTAAAT------ 1065
consensus_6609#1      CTATTTCGAAGGGTGACGATACGATCAATATTCCC-GGGTTTTTCCATTTAAATGTAATC 560
                      *********************************** ******************      

consensus_6609#0      --------------------------------------------
consensus_6609#1      CTGAACTCTGTAATCCTNATTTAAGTNTCNCATGGTCAACACTT 604